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comparison porechop.xml @ 7:18d17a5bfe11 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit da020fbee6e2bd91bc4a8d0850dc601db34ac82b
author jdv
date Sun, 15 Oct 2017 17:32:40 -0400
parents 15e64c5938e6
children 852b3fe95c20
comparison
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6:15e64c5938e6 7:18d17a5bfe11
32 #if str($demux_section.demux_options.demux) == "yes": 32 #if str($demux_section.demux_options.demux) == "yes":
33 --barcode_dir out 33 --barcode_dir out
34 #else: 34 #else:
35 --output "out/$filename" 35 --output "out/$filename"
36 #end if 36 #end if
37
38 ##if $input.is_of_type('fastq')
39 --format fastq
40 ##else:
41 ##--format fasta
42 ##end if
43 37
44 --threads \${GALAXY_SLOTS:-1} 38 --threads \${GALAXY_SLOTS:-1}
45 39
46 ##--Demultiplex Options-------------------------- 40 ##--Demultiplex Options--------------------------
47 41
144 138
145 <outputs> 139 <outputs>
146 140
147 <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}"> 141 <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}">
148 <filter>out_format == 'fastq'</filter> 142 <filter>out_format == 'fastq'</filter>
149 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fastqsanger" /> 143 <discover_datasets pattern="__designation_and_ext__" directory="out" format="fastqsanger" />
150 </collection> 144 </collection>
151 <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}"> 145 <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}">
152 <filter>out_format == 'fasta'</filter> 146 <filter>out_format == 'fasta'</filter>
153 <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="out" format="fasta" /> 147 <discover_datasets pattern="__designation_and_ext__" directory="out" format="fasta" />
154 </collection> 148 </collection>
155 149
156 <data format="table" name="result_table" label="${tool.name} on ${on_string} (summary)" /> 150 <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)" />
157 </outputs> 151 </outputs>
158 152
159 <!-- ***************************************************************** --> 153 <!-- ***************************************************************** -->
160 154
161 <tests> 155 <tests>