Mercurial > repos > jdv > porechop

comparison porechop.xml @ 6:15e64c5938e6 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 083a08f96c17f3116dce1dc1573192860f41ed70-dirty
author jdv
date Sun, 15 Oct 2017 12:30:20 -0400
parents 40232a4e5a04
children 18d17a5bfe11
comparison
equal deleted inserted replaced
5:64fcb9c72e47 6:15e64c5938e6
1 <tool id="porechop" name="Porechop" version="0.2.1"> 1 <tool id="porechop" name="Porechop" version="0.2.2">
2 2
3 <description>Demux and adapter removal</description> 3 <description>Demux and adapter removal</description>
4 4
5 <!-- ***************************************************************** --> 5 <!-- ***************************************************************** -->
6 6
160 160
161 <tests> 161 <tests>
162 <test> 162 <test>
163 <param name="input" value="test_barcodes.fastq" ftype="fastq" /> 163 <param name="input" value="test_barcodes.fastq" ftype="fastq" />
164 <param name="demux" value="yes" /> 164 <param name="demux" value="yes" />
165 <output_collection name="output_collection_fastq" type="list"> 165 <output_collection name="output_collection_fastq" type="list" count="4">
166 <element name="BC01.fastq" file="bar1/BC01.fastq" compare="diff" decompress="true"/> 166 <element name="BC01.fastq" file="bar1/BC01.fastq" compare="diff" decompress="true"/>
167 <element name="BC02.fastq" file="bar1/BC02.fastq" compare="diff" decompress="true"/> 167 <element name="BC02.fastq" file="bar1/BC02.fastq" compare="diff" decompress="true"/>
168 <element name="BC03.fastq" file="bar1/BC03.fastq" compare="diff" decompress="true"/> 168 <element name="BC03.fastq" file="bar1/BC03.fastq" compare="diff" decompress="true"/>
169 <element name="none.fastq" file="bar1/none.fastq" compare="diff" decompress="true"/> 169 <element name="none.fastq" file="bar1/none.fastq" compare="diff" decompress="true"/>
170 </output_collection> 170 </output_collection>
171 </test> 171 </test>
172 <test> 172 <test>
173 <param name="input" value="test_barcodes.fastq" ftype="fastq" /> 173 <param name="input" value="test_barcodes.fastq" ftype="fastq" />
174 <param name="demux" value="yes" /> 174 <param name="demux" value="yes" />
175 <param name="require_two_barcodes" value="True" /> 175 <param name="require_two_barcodes" value="True" />
176 <output_collection name="output_collection_fastq" type="list"> 176 <output_collection name="output_collection_fastq" type="list" count="4">
177 <element name="BC01.fastq" file="bar2/BC01.fastq" compare="diff" decompress="true"/> 177 <element name="BC01.fastq" file="bar2/BC01.fastq" compare="diff" decompress="true"/>
178 <element name="BC02.fastq" file="bar2/BC02.fastq" compare="diff" decompress="true"/> 178 <element name="BC02.fastq" file="bar2/BC02.fastq" compare="diff" decompress="true"/>
179 <element name="BC03.fastq" file="bar2/BC03.fastq" compare="diff" decompress="true"/> 179 <element name="BC03.fastq" file="bar2/BC03.fastq" compare="diff" decompress="true"/>
180 <element name="none.fastq" file="bar2/none.fastq" compare="diff" decompress="true"/> 180 <element name="none.fastq" file="bar2/none.fastq" compare="diff" decompress="true"/>
181 </output_collection> 181 </output_collection>
182 </test> 182 </test>
183 <test> 183 <test>
184 <param name="input" value="test_barcodes.fastq" ftype="fastq" /> 184 <param name="input" value="test_barcodes.fastq" ftype="fastq" />
185 <param name="demux" value="yes" /> 185 <param name="demux" value="yes" />
186 <param name="trim" value="yes" /> 186 <param name="trim" value="yes" />
187 <output_collection name="output_collection_fastq" type="list"> 187 <param name="discard_unassigned" value="yes" />
188 <output_collection name="output_collection_fastq" type="list" count="3">
188 <element name="BC01.fastq" file="bar1_trim/BC01.fastq" compare="diff" decompress="true"/> 189 <element name="BC01.fastq" file="bar1_trim/BC01.fastq" compare="diff" decompress="true"/>
189 <element name="BC02.fastq" file="bar1_trim/BC02.fastq" compare="diff" decompress="true"/> 190 <element name="BC02.fastq" file="bar1_trim/BC02.fastq" compare="diff" decompress="true"/>
190 <element name="BC03.fastq" file="bar1_trim/BC03.fastq" compare="diff" decompress="true"/> 191 <element name="BC03.fastq" file="bar1_trim/BC03.fastq" compare="diff" decompress="true"/>
191 <element name="none.fastq" file="bar1_trim/none.fastq" compare="diff" decompress="true"/>
192 </output_collection> 192 </output_collection>
193 </test> 193 </test>
194 </tests> 194 </tests>
195 195
196 <!-- ***************************************************************** --> 196 <!-- ***************************************************************** -->