Mercurial > repos > jdv > nanopore_qc

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    <h2>NanoporeQC Report</h2>
    <h3>Summary statistics</h3>
    <table>
        <caption>All reads</caption>
        <tr>
            <td>Total Yield (Gb)</td>
            <td>0.0092773</td>
        </tr>
        <tr>
            <td>Total Reads</td>
            <td>9990</td>
        </tr>
        <tr>
            <td>Mean Length</td>
            <td>928.7</td>
        </tr>
        <tr>
            <td>Median Length</td>
            <td>941.0</td>
        </tr>
        <tr>
            <td>Max Length</td>
            <td>25740.0</td>
        </tr>
        <tr>
            <td>Mean Q</td>
            <td>11.7</td>
        </tr>
        <tr>
            <td>Median Q</td>
            <td>12.7</td>
        </tr>
    </table>
    <table>
        <caption>Q>=6</caption>
        <tr>
            <td>Total Yield (Gb)</td>
            <td>0.0090947</td>
        </tr>
        <tr>
            <td>Total Reads</td>
            <td>9254</td>
        </tr>
        <tr>
            <td>Mean Length</td>
            <td>982.8</td>
        </tr>
        <tr>
            <td>Median Length</td>
            <td>945.0</td>
        </tr>
        <tr>
            <td>Max Length</td>
            <td>6545.0</td>
        </tr>
        <tr>
            <td>Mean Q</td>
            <td>12.3</td>
        </tr>
        <tr>
            <td>Median Q</td>
            <td>12.9</td>
        </tr>
    </table>
    <h3>QC plots</h3>
    <p>(Click on plot for hi-resolution version)</p>
    <a href="length_histogram.png">
        <figure>
            <img src="length_histogram.screen.png" alt="length_histogram" />
            <figcaption>Read length distribution</figcaption>
        </figure>
    </a>
    <a href="q_histogram.png">
        <figure>
            <img src="q_histogram.screen.png" alt="q_histogram" />
            <figcaption>Mean quality score distribution</figcaption>
        </figure>
    </a>
    <a href="reads_per_hour.png">
        <figure>
            <img src="reads_per_hour.screen.png" alt="reads_per_hour" />
            <figcaption>Yield over time</figcaption>
        </figure>
    </a>
    <a href="cumulative_yield.png">
        <figure>
            <img src="cumulative_yield.screen.png" alt="cumulative_yield" />
            <figcaption>Cumulative yield over time</figcaption>
        </figure>
    </a>
    <a href="yield_summary.png">
        <figure>
            <img src="yield_summary.screen.png" alt="yield_summary" />
            <figcaption>Yield by read length cutoff</figcaption>
        </figure>
    </a>
    <a href="flowcell_overview.png">
        <figure>
            <img src="flowcell_overview.screen.png" alt="flowcell_overview" />
            <figcaption>Median read quality per channel</figcaption>
        </figure>
    </a>
    <a href="length_by_hour.png">
        <figure>
            <img src="length_by_hour.screen.png" alt="length_by_hour" />
            <figcaption>Read length over time</figcaption>
        </figure>
    </a>
    <a href="q_by_hour.png">
        <figure>
            <img src="q_by_hour.screen.png" alt="q_by_hour" />
            <figcaption>Read quality over time</figcaption>
        </figure>
    </a>
    <a href="length_vs_q.png">
        <figure>
            <img src="length_vs_q.screen.png" alt="length_vs_q" />
            <figcaption>Read length vs. quality</figcaption>
        </figure>
    </a>

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author	jdv
date	Mon, 12 Mar 2018 19:55:54 -0400
parents	8462098b719a
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