Mercurial > repos > jdv > nanopore_qc

comparison test-data/output.html.small.q10 @ 1:8462098b719a draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 8acee97e507b49ee9770574c711081ebc3779916
author jdv
date Mon, 04 Dec 2017 13:19:21 -0500
parents
children f2081dc93880
comparison
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0:192df6f6a41e 1:8462098b719a
1 <?xml version="1.0" encoding="utf-8"?>
2 <!DOCTYPE html>
3 <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
4 <head>
5 <title></title>
6 <meta http-equiv="content-type" content="application/xhtml+xml; charset=utf-8" />
7 <style>
8 h2 {
9 padding: 0.3em;
10 background-color: #000000;
11 color: #ffffff;
12 margin: 1em 0 2em 0;
13 }
14 h3 {
15 padding: 0em 0.2em 0em 0.2em;
16 color: #555555;
17 border: solid 1px black;
18 border-width: 0px 0px 1px 0px;
19 margin: 2em 0 0.4em 0;
20 }
21 tr {
22 margin: 0;
23 }
24 tr:nth-child(even) {
25 background-color: #bbbbbb;
26 }
27 tr:nth-child(odd) {
28 background-color: #eeeeee;
29 }
30 caption {
31 text-align: left;
32 font-weight: bold;
33 background-color: #550000;
34 color: #ffffff;
35 padding: 0.1em 0.2em;
36 }
37 table {
38 margin: 1em;
39 padding: 0.3em;
40 }
41 td {
42 margin: 0;
43 padding: 0 0.4em;
44 }
45 tr td:nth-child(1) {
46 color: #550000;
47 }
48 figure {
49 display: table;
50 margin: 2em 0;
51 }
52 figcaption {
53 display: table-caption;
54 caption-side: top;
55 font-size: 1.1em;
56 text-decoration: none;
57 text-align: center;
58 font-weight: bold;
59 background-color: #550000;
60 color: #ffffff;
61 padding: 0.1em 0.2em;
62 margin: 2em 0 0.7em 0;
63 }
64
65 </style>
66 </head>
67 <body>
68
69 <h2>NanoporeQC Report</h2>
70 <h3>Summary statistics</h3>
71 <table>
72 <caption>All reads</caption>
73 <tr>
74 <td>Total Yield (Gb)</td>
75 <td>0.0092773</td>
76 </tr>
77 <tr>
78 <td>Total Reads</td>
79 <td>9999</td>
80 </tr>
81 <tr>
82 <td>Mean Length</td>
83 <td>927.8</td>
84 </tr>
85 <tr>
86 <td>Median Length</td>
87 <td>941.0</td>
88 </tr>
89 <tr>
90 <td>Max Length</td>
91 <td>25740.0</td>
92 </tr>
93 <tr>
94 <td>Mean Q</td>
95 <td>11.7</td>
96 </tr>
97 <tr>
98 <td>Median Q</td>
99 <td>12.7</td>
100 </tr>
101 </table>
102 <table>
103 <caption>Q>=10</caption>
104 <tr>
105 <td>Total Yield (Gb)</td>
106 <td>0.0079507</td>
107 </tr>
108 <tr>
109 <td>Total Reads</td>
110 <td>7952</td>
111 </tr>
112 <tr>
113 <td>Mean Length</td>
114 <td>999.8</td>
115 </tr>
116 <tr>
117 <td>Median Length</td>
118 <td>949.0</td>
119 </tr>
120 <tr>
121 <td>Max Length</td>
122 <td>6545.0</td>
123 </tr>
124 <tr>
125 <td>Mean Q</td>
126 <td>12.9</td>
127 </tr>
128 <tr>
129 <td>Median Q</td>
130 <td>13.1</td>
131 </tr>
132 </table>
133 <h3>QC plots</h3>
134 <p>(Click on plot for hi-resolution version)</p>
135 <a href="length_histogram.png">
136 <figure>
137 <img src="length_histogram.screen.png" alt="length_histogram" />
138 <figcaption>Read length distribution</figcaption>
139 </figure>
140 </a>
141 <a href="q_histogram.png">
142 <figure>
143 <img src="q_histogram.screen.png" alt="q_histogram" />
144 <figcaption>Mean quality score distribution</figcaption>
145 </figure>
146 </a>
147 <a href="reads_per_hour.png">
148 <figure>
149 <img src="reads_per_hour.screen.png" alt="reads_per_hour" />
150 <figcaption>Yield over time</figcaption>
151 </figure>
152 </a>
153 <a href="cumulative_yield.png">
154 <figure>
155 <img src="cumulative_yield.screen.png" alt="cumulative_yield" />
156 <figcaption>Cumulative yield over time</figcaption>
157 </figure>
158 </a>
159 <a href="yield_summary.png">
160 <figure>
161 <img src="yield_summary.screen.png" alt="yield_summary" />
162 <figcaption>Yield by read length cutoff</figcaption>
163 </figure>
164 </a>
165 <a href="flowcell_overview.png">
166 <figure>
167 <img src="flowcell_overview.screen.png" alt="flowcell_overview" />
168 <figcaption>Median read quality per channel</figcaption>
169 </figure>
170 </a>
171 <a href="length_by_hour.png">
172 <figure>
173 <img src="length_by_hour.screen.png" alt="length_by_hour" />
174 <figcaption>Read length over time</figcaption>
175 </figure>
176 </a>
177 <a href="q_by_hour.png">
178 <figure>
179 <img src="q_by_hour.screen.png" alt="q_by_hour" />
180 <figcaption>Read quality over time</figcaption>
181 </figure>
182 </a>
183 <a href="length_vs_q.png">
184 <figure>
185 <img src="length_vs_q.screen.png" alt="length_vs_q" />
186 <figcaption>Read length vs. quality</figcaption>
187 </figure>
188 </a>
189
190 </body>
191 </html>