Mercurial > repos > jdv > nanopore_qc

annotate yaml_to_html.pl @ 10:e5a2720176d1 draft default tip

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"planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 70f0b9a3a9835fd60acbb6d08efd0d5c15c97458"
author jdv
date Fri, 23 Aug 2019 18:16:53 -0400
parents 0cf41189f086
children
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192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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1 #!/usr/bin/env perl
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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3 use strict;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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4 use warnings;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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5 use 5.012;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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7 use YAML::XS qw/LoadFile/;
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8 use MIME::Base64;
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9 use autodie;
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11 my ($fn_yaml, $dir_in, $fn_out) = @ARGV;
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192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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13 die "Can't find or read input file: $!\n"
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14 if (! -r $fn_yaml);
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192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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16 # set output filehandle based on arguments
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17 my $fh = \*STDOUT;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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18 if (defined $fn_out) {
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19 open $fh, '>', $fn_out;
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20 }
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22 my $yaml = LoadFile($fn_yaml);
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24 convert($yaml, $dir_in);
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26 sub convert {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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28 my ($yaml) = @_;
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30 print {$fh} header();
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32 say {$fh} " <h3>Summary statistics</h3>";
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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34 for my $grp (sort keys %$yaml) {
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36 my $ref = $yaml->{$grp};
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38 next if (! ref $ref);
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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39 next if (! defined $ref->{'total.gigabases'});
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41 print {$fh} <<"CONTENT"
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42 <table>
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43 <caption>$grp</caption>
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44 <tr>
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45 <td>Total Yield (Gb)</td>
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46 <td>$ref->{'total.gigabases'}</td>
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47 </tr>
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48 <tr>
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49 <td>Total Reads</td>
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50 <td>$ref->{'total.reads'}</td>
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51 </tr>
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52 <tr>
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53 <td>Mean Length</td>
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54 <td>$ref->{'mean.length'}</td>
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55 </tr>
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56 <tr>
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57 <td>Median Length</td>
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58 <td>$ref->{'median.length'}</td>
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59 </tr>
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60 <tr>
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61 <td>Max Length</td>
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62 <td>$ref->{'max.length'}</td>
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63 </tr>
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64 <tr>
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65 <td>Mean Q</td>
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66 <td>$ref->{'mean.q'}</td>
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67 </tr>
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68 <tr>
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69 <td>Median Q</td>
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70 <td>$ref->{'median.q'}</td>
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71 </tr>
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72 </table>
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73 CONTENT
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74
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75 }
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76
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77 my %figs = (
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78 'length_histogram' => "Read length distribution",
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79 'q_histogram' => "Mean quality score distribution",
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80 'reads_per_hour' => "Yield over time",
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81 'cumulative_yield' => "Cumulative yield over time",
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82 'yield_summary' => "Yield by read length cutoff",
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83 'flowcell_overview' => "Median read quality per channel",
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84 'length_by_hour' => "Read length over time",
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85 'q_by_hour' => "Read quality over time",
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86 'length_vs_q' => "Read length vs. quality",
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87 );
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88
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89 my @order = qw/
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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90 length_histogram
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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91 q_histogram
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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92 reads_per_hour
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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93 cumulative_yield
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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94 yield_summary
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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95 flowcell_overview
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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96 length_by_hour
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97 q_by_hour
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98 length_vs_q
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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99 /;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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100
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101
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102 say {$fh} " <h3>QC plots</h3>";
6
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103 say {$fh} " <p>(Click on plot for high-resolution version, or in Chrome \"Open link in new tab\")</p>";
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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104
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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diff changeset
105 for my $base (@order) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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106
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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107 my $caption = $figs{$base} // die "No caption found for $base";
6
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108
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109 # Base64-encode images
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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110 my $fn_img_full = "$dir_in/$base.png";
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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111 my $fn_img_screen = "$dir_in/$base.screen.png";
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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112 die "Failed to find or read $fn_img_full"
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113 if (! -r $fn_img_full);
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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114 die "Failed to find or read $fn_img_screen"
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115 if (! -r $fn_img_screen);
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116 my $img_full = encode($fn_img_full);
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117 my $img_screen = encode($fn_img_screen);
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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118
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119 print {$fh} <<"CONTENT"
6
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120 <a href="data:image/png;base64,$img_full">
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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121 <figure>
6
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122 <img src="data:image/png;base64,$img_screen" alt="$base" />
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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123 <figcaption>$caption</figcaption>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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124 </figure>
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125 </a>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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126 CONTENT
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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127
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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128 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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129
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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130 print {$fh} footer();
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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131
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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132 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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133
6
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diff changeset
134 sub encode {
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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135
6
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diff changeset
136 my ($fn) = @_;
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diff changeset
137 open my $in, '<:raw', $fn;
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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diff changeset
138 local($/) = undef;
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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139 return encode_base64(<$in>);
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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diff changeset
140
0cf41189f086 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 0d8d1ec70b450f96a29a98e4dec9688b18170d32
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diff changeset
141 }
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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142
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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diff changeset
143 sub header {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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144
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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145 return <<'HEADER';
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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146 <?xml version="1.0" encoding="utf-8"?>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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147 <!DOCTYPE html>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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148 <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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diff changeset
149 <head>
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150 <title></title>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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151 <meta http-equiv="content-type" content="application/xhtml+xml; charset=utf-8" />
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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diff changeset
152 <style>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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153 h2 {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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diff changeset
154 padding: 0.3em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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155 background-color: #000000;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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156 color: #ffffff;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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157 margin: 1em 0 2em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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158 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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diff changeset
159 h3 {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
160 padding: 0em 0.2em 0em 0.2em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
161 color: #555555;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
162 border: solid 1px black;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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diff changeset
163 border-width: 0px 0px 1px 0px;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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diff changeset
164 margin: 2em 0 0.4em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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165 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
166 tr {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
167 margin: 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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diff changeset
168 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
169 tr:nth-child(even) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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170 background-color: #bbbbbb;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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171 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
172 tr:nth-child(odd) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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173 background-color: #eeeeee;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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174 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
175 caption {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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parents:
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176 text-align: left;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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177 font-weight: bold;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
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178 background-color: #550000;
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179 color: #ffffff;
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180 padding: 0.1em 0.2em;
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181 }
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182 table {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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183 margin: 1em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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184 padding: 0.3em;
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185 }
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186 td {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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187 margin: 0;
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188 padding: 0 0.4em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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189 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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190 tr td:nth-child(1) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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191 color: #550000;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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192 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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193 figure {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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194 display: table;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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195 margin: 2em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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196 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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197 figcaption {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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198 display: table-caption;
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199 caption-side: top;
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200 font-size: 1.1em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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201 text-decoration: none;
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202 text-align: center;
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203 font-weight: bold;
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204 background-color: #550000;
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205 color: #ffffff;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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206 padding: 0.1em 0.2em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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207 margin: 2em 0 0.7em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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208 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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209
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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210 </style>
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211 </head>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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212 <body>
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213
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214 <h2>NanoporeQC Report</h2>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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215 HEADER
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216
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217 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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218
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219 sub footer {
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220
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221 return <<'FOOTER';
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222
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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223 </body>
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224 </html>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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225 FOOTER
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226
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
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227 }