Mercurial > repos > jdv > nanopore_qc

annotate yaml_to_html.pl @ 4:4b7d1bcf210c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit dfa6f9934da27ffddc4da6c16d97d4057662ef65
author jdv
date Mon, 12 Mar 2018 15:04:45 -0400
parents 192df6f6a41e
children 0cf41189f086
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
1 #!/usr/bin/env perl
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
2
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
3 use strict;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
4 use warnings;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
5 use 5.012;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
6
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
7 use YAML::XS qw/LoadFile/;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
8 use autodie;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
9
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
10 my ($fn_in, $fn_out) = @ARGV;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
11
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
12 die "Can't find or read input file: $!\n"
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
13 if (! -r $fn_in);
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
14
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
15 # set output filehandle based on arguments
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
16 my $fh = \*STDOUT;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
17 if (defined $fn_out) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
18 open $fh, '>', $fn_out;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
19 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
20
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
21 my $yaml = LoadFile($ARGV[0]);
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
22
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
23 convert($yaml);
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
24
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
25 sub convert {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
26
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
27 my ($yaml) = @_;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
28
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
29 print {$fh} header();
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
30
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
31 say {$fh} " <h3>Summary statistics</h3>";
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
32
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
33 for my $grp (sort keys %$yaml) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
34
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
35 my $ref = $yaml->{$grp};
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
36
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
37 next if (! ref $ref);
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
38 next if (! defined $ref->{'total.gigabases'});
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
39
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
40 print {$fh} <<"CONTENT"
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
41 <table>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
42 <caption>$grp</caption>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
43 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
44 <td>Total Yield (Gb)</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
45 <td>$ref->{'total.gigabases'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
46 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
47 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
48 <td>Total Reads</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
49 <td>$ref->{'total.reads'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
50 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
51 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
52 <td>Mean Length</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
53 <td>$ref->{'mean.length'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
54 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
55 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
56 <td>Median Length</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
57 <td>$ref->{'median.length'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
58 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
59 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
60 <td>Max Length</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
61 <td>$ref->{'max.length'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
62 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
63 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
64 <td>Mean Q</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
65 <td>$ref->{'mean.q'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
66 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
67 <tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
68 <td>Median Q</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
69 <td>$ref->{'median.q'}</td>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
70 </tr>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
71 </table>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
72 CONTENT
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
73
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
74 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
75
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
76 my %figs = (
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
77 'length_histogram' => "Read length distribution",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
78 'q_histogram' => "Mean quality score distribution",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
79 'reads_per_hour' => "Yield over time",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
80 'cumulative_yield' => "Cumulative yield over time",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
81 'yield_summary' => "Yield by read length cutoff",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
82 'flowcell_overview' => "Median read quality per channel",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
83 'length_by_hour' => "Read length over time",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
84 'q_by_hour' => "Read quality over time",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
85 'length_vs_q' => "Read length vs. quality",
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
86 );
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
87
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
88 my @order = qw/
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
89 length_histogram
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
90 q_histogram
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
91 reads_per_hour
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
92 cumulative_yield
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
93 yield_summary
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
94 flowcell_overview
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
95 length_by_hour
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
96 q_by_hour
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
97 length_vs_q
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
98 /;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
99
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
100
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
101 say {$fh} " <h3>QC plots</h3>";
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
102 say {$fh} " <p>(Click on plot for hi-resolution version)</p>";
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
103
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
104 for my $base (@order) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
105
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
106 my $caption = $figs{$base} // die "No caption found for $base";
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
107
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
108 print {$fh} <<"CONTENT"
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
109 <a href="$base.png">
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
110 <figure>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
111 <img src="$base.screen.png" alt="$base" />
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
112 <figcaption>$caption</figcaption>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
113 </figure>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
114 </a>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
115 CONTENT
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
116
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
117 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
118
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
119 print {$fh} footer();
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
120
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
121 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
122
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
123
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
124
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
125 sub header {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
126
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
127 return <<'HEADER';
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
128 <?xml version="1.0" encoding="utf-8"?>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
129 <!DOCTYPE html>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
130 <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
131 <head>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
132 <title></title>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
133 <meta http-equiv="content-type" content="application/xhtml+xml; charset=utf-8" />
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
134 <style>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
135 h2 {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
136 padding: 0.3em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
137 background-color: #000000;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
138 color: #ffffff;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
139 margin: 1em 0 2em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
140 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
141 h3 {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
142 padding: 0em 0.2em 0em 0.2em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
143 color: #555555;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
144 border: solid 1px black;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
145 border-width: 0px 0px 1px 0px;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
146 margin: 2em 0 0.4em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
147 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
148 tr {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
149 margin: 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
150 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
151 tr:nth-child(even) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
152 background-color: #bbbbbb;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
153 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
154 tr:nth-child(odd) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
155 background-color: #eeeeee;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
156 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
157 caption {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
158 text-align: left;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
159 font-weight: bold;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
160 background-color: #550000;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
161 color: #ffffff;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
162 padding: 0.1em 0.2em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
163 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
164 table {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
165 margin: 1em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
166 padding: 0.3em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
167 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
168 td {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
169 margin: 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
170 padding: 0 0.4em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
171 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
172 tr td:nth-child(1) {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
173 color: #550000;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
174 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
175 figure {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
176 display: table;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
177 margin: 2em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
178 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
179 figcaption {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
180 display: table-caption;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
181 caption-side: top;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
182 font-size: 1.1em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
183 text-decoration: none;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
184 text-align: center;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
185 font-weight: bold;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
186 background-color: #550000;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
187 color: #ffffff;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
188 padding: 0.1em 0.2em;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
189 margin: 2em 0 0.7em 0;
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
190 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
191
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
192 </style>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
193 </head>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
194 <body>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
195
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
196 <h2>NanoporeQC Report</h2>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
197 HEADER
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
198
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
199 }
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
200
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
201 sub footer {
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
202
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
203 return <<'FOOTER';
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
204
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
205 </body>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
206 </html>
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
207 FOOTER
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
208
192df6f6a41e planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopore_qc commit 59d1272f707bdd73a3f7d085f96789e649d54240-dirty
jdv
parents:
diff changeset
209 }