Mercurial > repos > jdv > nanopolish

diff nanopolish_variants.xml @ 5:ee4a11ebe451 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopolish commit 1da5a3f152e115430b04ab532541a220a8e0adba
author jdv
date Fri, 01 Dec 2017 22:13:14 -0500
parents bdd6c1ab07c5
children 36cc4ae4160e
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--- a/nanopolish_variants.xml	Fri Dec 01 21:22:01 2017 -0500
+++ b/nanopolish_variants.xml	Fri Dec 01 22:13:14 2017 -0500
@@ -69,7 +69,14 @@
     <!-- ***************************************************************** -->
 
     <tests>
-        <!-- TODO -->
+        <test>
+            <param name="input_reads" value="variants.reads.fa" ftype="fasta" />
+            <param name="input_fast5" value="variants.in.fast5.tar.bz2" ftype="fast5.tar.bz2" />
+            <param name="input_bam"   value="variants.bam" ftype="bam" />
+            <param name="input_ref"   value="variants.ref.fa" ftype="fasta" />
+            <param name="fix_homopolymers" value="True"/>
+            <output name="out_consensus" file="variants.out.fa" compare="diff" />
+        </test>
     </tests>
 
     <!-- ***************************************************************** -->