Mercurial > repos > jdv > nanopolish

comparison nanopolish_variants.xml @ 10:c00a942cfc0b draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopolish commit 1eeffb2cd0b8115ca185f7fcb2df2920dff33e3b
author jdv
date Mon, 12 Feb 2018 23:59:21 -0500
parents f1141f6a2d65
children
comparison
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9:f1141f6a2d65 10:c00a942cfc0b
134 <assert_command> 134 <assert_command>
135 <not_has_text text="--fix-homopolymers" /> 135 <not_has_text text="--fix-homopolymers" />
136 <has_text text="--calculate-all-support" /> 136 <has_text text="--calculate-all-support" />
137 </assert_command> 137 </assert_command>
138 </test> 138 </test>
139 <!-- test empty input (should return empty output, not throw error) -->
140 <!-- currently empty inputs don't work, so this test is disabled
141 <test>
142 <param name="input_reads" value="called.fa" ftype="fasta" />
143 <param name="input_fast5" value="test.fast5.tar.gz" ftype="fast5.tar.gz" />
144 <param name="input_bam" value="called.bam" ftype="bam" />
145 <param name="input_ref" value="ref_empty.fa" ftype="fasta" />
146 <param name="input_index" value="index.tar" ftype="tar" />
147 <output name="out_consensus" file="consensus.empty.fa" compare="diff" />
148 <output name="out_variants" file="consensus.empty.vcf" compare="diff" />
149 </test>
150 -->
139 </tests> 151 </tests>
140 152
141 <!-- ***************************************************************** --> 153 <!-- ***************************************************************** -->
142 154
143 <help> 155 <help>