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comparison nanopolish_variants.xml @ 3:a1d433401bc2 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/nanopolish commit e9238df905c413aaab086ea146cb1b97e3ffa0fd
author jdv
date Sat, 14 Oct 2017 00:05:43 -0400
parents a5db82bec597
children bdd6c1ab07c5
comparison
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2:e4b6d4a53f2e 3:a1d433401bc2
28 --bam input.bam 28 --bam input.bam
29 --genome $input_ref 29 --genome $input_ref
30 --consensus $out_consensus 30 --consensus $out_consensus
31 --outfile $out_variants 31 --outfile $out_variants
32 --threads \${GALAXY_SLOTS:-1} 32 --threads \${GALAXY_SLOTS:-1}
33 --max-round $max_rounds 33 --max-rounds $max_rounds
34 --max-haplotypes $max_haplotypes 34 --max-haplotypes $max_haplotypes
35 --min-candidate-depth $min_candidate_depth 35 --min-candidate-depth $min_candidate_depth
36 --min-candidate-frequency $min_candidate_frequency 36 --min-candidate-frequency $min_candidate_frequency
37 --fast5 $input_fast5 37 --fast5 $input_fast5
38 $fix_homopolymers 38 $fix_homopolymers
85 85
86 The Galaxy wrapper has modified nanopolish to take a gzip tarball of FAST5 reads 86 The Galaxy wrapper has modified nanopolish to take a gzip tarball of FAST5 reads
87 as input, such as can be produced by `poretools combine`, and always outputs a 87 as input, such as can be produced by `poretools combine`, and always outputs a
88 single FASTQ file. 88 single FASTQ file.
89 89
90 This is the `extract` module. 90 This is the `variants` module.
91 91
92 ]]> 92 ]]>
93 </help> 93 </help>
94 94
95 <!-- ***************************************************************** --> 95 <!-- ***************************************************************** -->