Mercurial > repos > jdv > b2b_sync_reads

comparison sync_reads.xml @ 1:b7f66945bf72 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 9bf8a0462bd44f170c0371b6cae67dd0c3b3da9f-dirty"
author jdv
date Tue, 28 Sep 2021 06:14:59 +0000
parents 6466424fc8ac
children
comparison
equal deleted inserted replaced
0:6466424fc8ac 1:b7f66945bf72
4 4
5 <!-- ***************************************************************** --> 5 <!-- ***************************************************************** -->
6 6
7 <requirements> 7 <requirements>
8 <!-- <requirement type="package" version="0.003">b2b-utils</requirement> --> 8 <!-- <requirement type="package" version="0.003">b2b-utils</requirement> -->
9 <requirement type="package" version="0.006007">perl-biox-seq</requirement> 9 <requirement type="package" version="0.008002">perl-biox-seq</requirement>
10 </requirements> 10 </requirements>
11 11
12 <!-- ***************************************************************** --> 12 <!-- ***************************************************************** -->
13 13
14 <version_command>sync_reads --version | perl -wnE'print "$1\n" for /sync_reads v(.+)/g'</version_command> 14 <version_command>perl $__tool_directory__/sync_reads --version | perl -wnE'print "$1\n" for /sync_reads v(.+)/g'</version_command>
15 15
16 <!-- ***************************************************************** --> 16 <!-- ***************************************************************** -->
17 17
18 <command detect_errors="aggressive"> 18 <command detect_errors="aggressive">
19 <![CDATA[ 19 <![CDATA[
20 20
21 sync_reads 21 perl $__tool_directory__/sync_reads
22 --fwd $input1 22 --fwd $input1
23 --rev $input2 23 --rev $input2
24 --fwd_out $fwd_out 24 --fwd_out $fwd_out
25 --rev_out $rev_out 25 --rev_out $rev_out
26 #if str($write_singles) == 'y': 26 #if str($write_singles) == 'y':