Mercurial > repos > jdv > b2b_summarize_assembly

annotate test-data/summarize.strip.txt @ 1:5def63878840 draft default tip

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"planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit 9bf8a0462bd44f170c0371b6cae67dd0c3b3da9f-dirty"
author jdv
date Tue, 28 Sep 2021 06:16:07 +0000
parents 114353d77370
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
1 ----------------------------------------
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
2 Summary
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
3 ----------------------------------------
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
4 number of scaffolds: 10
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
5 total length: 27689
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
6 average length: 2769
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
7 G/C content: 50%
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
8 ambiguous content: 12%
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
9 longest scaffold: 5980
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
10 N50: 4945
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
11 N90: 1997
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
12 N95: 1197
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
13 shortest scaffold: 209
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
14 NOTE: Ns were stripped for above calculations
114353d77370 planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/b2b_utils commit b5d52d0664b01d252cf61b98be373d09f1ecc2df
jdv
parents:
diff changeset
15 ----------------------------------------