--- a/out_dir/configuration.cfg	Mon Jun 18 12:20:28 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-[pipeline]
-basecall_type = linear
-min_qscore_1d = 7.0
-desc_file = /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned/layout_raw_basecall_1d.jsn
-log_intermodule_messages = False
-
-[data_trimmer]
-ev_window = 20
-ev_threshold = 5
-min_events = 3
-delta = 2
-chunk_size_out = 0      # Use a nonzero value to chunk output
-
-[basecaller]
-model = template_r9.5_450bps_5mer_raw.jsn
-implementation = auto
-min_events = 100
-max_events = 10000
-overlap = 50
-min_quality = -10.0
-min_prob = 1e-5
-simple_decoding = 1
-homopolymer_correct = 0
-model_path = /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned
-
-[call_handler]
-record_base = read
-qscore_adjuster_intercept = 1.5
-qscore_adjuster_slope = 1.5
-
-[barcode_detector]
-
-[fastq]
-identifier = {read_id}
-header = {identifier} runid={run_id} read={read_number} ch={channel_id} start_time={start_time_utc}
-header_with_barcoding = {identifier} runid={run_id} read={read_number} ch={channel_id} start_time={start_time_utc} barcode={barcode_id}
-batch_file_name = fastq_runid_{run_id}_{batch_counter}.{extension}
-single_file_name = {read_id}.{extension}
-all_file_name = fastq_runid_{run_id}.fastq
-
-[fast5]
-basecall_columns = mean,start,stdv,length,model_state,move,p_model_state,weights
-