Mercurial > repos > jdv > albacore
diff albacore_1D.xml @ 2:b658298e65d8 draft
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
author | jdv |
---|---|
date | Fri, 08 Sep 2017 10:14:40 -0400 |
parents | 0a4f83207e53 |
children | 4d72adba794f |
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--- a/albacore_1D.xml Wed Sep 06 12:12:52 2017 -0400 +++ b/albacore_1D.xml Fri Sep 08 10:14:40 2017 -0400 @@ -28,7 +28,7 @@ <inputs> - <param name="input" type="data" format="fast5_archive" label="Input reads" /> + <param name="input" type="data" format="fast5.tar" label="Input reads" /> <param name="out_format" type="select" label="Output format"> <option value="fastq" selected="true">fastq</option> <option value="fast5">fast5</option> @@ -44,7 +44,7 @@ <data name="output" format="fastq" label="${tool.name} on ${on_string} (reads)"> <filter>demux is False</filter> <change_format> - <when input="out_format" value="fast5" format="fast5_archive" /> + <when input="out_format" value="fast5" format="fast5.tar.gz" /> </change_format> </data> <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string} (reads)"> @@ -53,7 +53,7 @@ </collection> <collection type="list" name="output_collection_fast5" label="${tool.name} on ${on_string} (reads)"> <filter>demux is True and out_format == 'fast5'</filter> - <discover_datasets pattern="(?P<name>.*)" directory="final" format="fast5_archive" /> + <discover_datasets pattern="(?P<name>.*)" directory="final" format="fast5.tar.gz" /> </collection> <data name="table" format="tabular" from_work_dir="out_dir/sequencing_summary.txt" label="${tool.name} on ${on_string} (table)" /> @@ -63,7 +63,7 @@ <tests> <test> - <param name="input" value="test_data.fast5.tar.gz" ftype="fast5_archive" /> + <param name="input" value="test_data.fast5.tar.gz" ftype="fast5.tar.gz" /> <output name="output" file="test_data.fastq" compare="diff" /> </test> </tests>