diff albacore_1D.xml @ 2:b658298e65d8 draft

planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 669955c21a5e770a6777269de6b1d2c375a704e3
author jdv
date Fri, 08 Sep 2017 10:14:40 -0400
parents 0a4f83207e53
children 4d72adba794f
line wrap: on
line diff
--- a/albacore_1D.xml	Wed Sep 06 12:12:52 2017 -0400
+++ b/albacore_1D.xml	Fri Sep 08 10:14:40 2017 -0400
@@ -28,7 +28,7 @@
 
     <inputs>
 
-        <param name="input" type="data" format="fast5_archive" label="Input reads" />
+        <param name="input" type="data" format="fast5.tar" label="Input reads" />
         <param name="out_format" type="select" label="Output format">
             <option value="fastq" selected="true">fastq</option>
             <option value="fast5">fast5</option>
@@ -44,7 +44,7 @@
         <data name="output" format="fastq" label="${tool.name} on ${on_string} (reads)">
             <filter>demux is False</filter>
             <change_format>
-                <when input="out_format" value="fast5" format="fast5_archive" />
+                <when input="out_format" value="fast5" format="fast5.tar.gz" />
             </change_format>
         </data>
         <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string} (reads)">
@@ -53,7 +53,7 @@
         </collection>
         <collection type="list" name="output_collection_fast5" label="${tool.name} on ${on_string} (reads)">
             <filter>demux is True and out_format == 'fast5'</filter>
-            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="final" format="fast5_archive" />
+            <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="final" format="fast5.tar.gz" />
         </collection>
         <data name="table" format="tabular" from_work_dir="out_dir/sequencing_summary.txt" label="${tool.name} on ${on_string} (table)" />
 
@@ -63,7 +63,7 @@
 
     <tests>
         <test>
-            <param name="input" value="test_data.fast5.tar.gz" ftype="fast5_archive" />
+            <param name="input" value="test_data.fast5.tar.gz" ftype="fast5.tar.gz" />
             <output name="output" file="test_data.fastq" compare="diff" />
         </test>
     </tests>