Mercurial > repos > jdv > albacore

diff albacore_1D.xml @ 5:4d72adba794f draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit aa6136c5fa32b987f64bd2b0dc1f72018038b0bb
author jdv
date Fri, 20 Oct 2017 23:10:23 -0400
parents b658298e65d8
children 3dfde840119e
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--- a/albacore_1D.xml	Fri Oct 13 16:13:22 2017 -0400
+++ b/albacore_1D.xml	Fri Oct 20 23:10:23 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="albacore_1D" name="Albacore 1D" version="1.2.6">
+<tool id="albacore_1D" name="Albacore 1D" version="2.0.2">
 
     <description>ONT production basecaller</description>
 
@@ -34,6 +34,7 @@
             <option value="fast5">fast5</option>
         </param>
         <param name="demux" type="boolean" checked="false" label="Demultiplex" />
+        <param name="output_table" type="boolean" checked="false" label="Include table in output" />
 
     </inputs>
 
@@ -55,7 +56,10 @@
             <filter>demux is True and out_format == 'fast5'</filter>
             <discover_datasets pattern="(?P&lt;name&gt;.*)" directory="final" format="fast5.tar.gz" />
         </collection>
-        <data name="table" format="tabular" from_work_dir="out_dir/sequencing_summary.txt" label="${tool.name} on ${on_string} (table)" />
+
+        <data name="table" format="tabular" from_work_dir="out_dir/sequencing_summary.txt" label="${tool.name} on ${on_string} (table)">
+            <filter>output_table is True</filter>
+        </data>
 
     </outputs>
 
@@ -64,7 +68,7 @@
     <tests>
         <test>
             <param name="input" value="test_data.fast5.tar.gz" ftype="fast5.tar.gz" />
-            <output name="output" file="test_data.fastq" compare="diff" />
+            <output name="output" file="test_data.fastq" compare="sim_size" delta="0"/>
         </test>
     </tests>