--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/out_dir/configuration.cfg	Mon Jun 18 12:20:28 2018 -0400
@@ -0,0 +1,43 @@
+[pipeline]
+basecall_type = linear
+min_qscore_1d = 7.0
+desc_file = /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned/layout_raw_basecall_1d.jsn
+log_intermodule_messages = False
+
+[data_trimmer]
+ev_window = 20
+ev_threshold = 5
+min_events = 3
+delta = 2
+chunk_size_out = 0      # Use a nonzero value to chunk output
+
+[basecaller]
+model = template_r9.5_450bps_5mer_raw.jsn
+implementation = auto
+min_events = 100
+max_events = 10000
+overlap = 50
+min_quality = -10.0
+min_prob = 1e-5
+simple_decoding = 1
+homopolymer_correct = 0
+model_path = /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned
+
+[call_handler]
+record_base = read
+qscore_adjuster_intercept = 1.5
+qscore_adjuster_slope = 1.5
+
+[barcode_detector]
+
+[fastq]
+identifier = {read_id}
+header = {identifier} runid={run_id} read={read_number} ch={channel_id} start_time={start_time_utc}
+header_with_barcoding = {identifier} runid={run_id} read={read_number} ch={channel_id} start_time={start_time_utc} barcode={barcode_id}
+batch_file_name = fastq_runid_{run_id}_{batch_counter}.{extension}
+single_file_name = {read_id}.{extension}
+all_file_name = fastq_runid_{run_id}.fastq
+
+[fast5]
+basecall_columns = mean,start,stdv,length,model_state,move,p_model_state,weights
+