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comparison out_dir/pipeline.log @ 8:3dfde840119e draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/albacore commit 8bb4eaadc31e6b986bee59392559a825c782447c-dirty
author jdv
date Mon, 18 Jun 2018 12:20:28 -0400
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7:ce1fa05ffb6c 8:3dfde840119e
1 2018-06-18 10:19:54,951 ONT Albacore Sequencing Pipeline Software (version 2.0.2)
2 2018-06-18 10:19:54,951 Debug level is 0
3 2018-06-18 10:19:54,959 Selected config file /home/jeremy/.local/lib/python3.5/site-packages/albacore/data_versioned/r95_450bps_linear.cfg to match flowcell FLO-MIN107 and kit SQK-LSK108
4 2018-06-18 10:19:54,959 Using config file: layout_raw_basecall_1d.jsn
5 2018-06-18 10:19:55,006 No option 'pipeline > min_qscore_1dsq' in the config, so using the default of 0.0
6 2018-06-18 10:19:55,008 No option 'pipeline > min_qscore_1dsq' in the config, so using the default of 0.0
7 2018-06-18 10:19:57,745 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12103_ch_399_strand.fast5".
8 2018-06-18 10:19:57,918 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12085_ch_399_strand.fast5".
9 2018-06-18 10:19:57,984 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12103_ch_399_strand.fast5".
10 2018-06-18 10:19:58,068 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12081_ch_399_strand.fast5".
11 2018-06-18 10:19:58,125 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12085_ch_399_strand.fast5".
12 2018-06-18 10:19:58,229 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12175_ch_399_strand.fast5".
13 2018-06-18 10:19:58,283 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12081_ch_399_strand.fast5".
14 2018-06-18 10:19:58,335 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12153_ch_399_strand.fast5".
15 2018-06-18 10:19:58,391 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12175_ch_399_strand.fast5".
16 2018-06-18 10:19:58,423 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12068_ch_399_strand.fast5".
17 2018-06-18 10:19:58,482 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12153_ch_399_strand.fast5".
18 2018-06-18 10:19:58,535 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12091_ch_399_strand.fast5".
19 2018-06-18 10:19:58,590 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12068_ch_399_strand.fast5".
20 2018-06-18 10:19:58,632 Submitting file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12113_ch_399_strand.fast5".
21 2018-06-18 10:19:58,689 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12091_ch_399_strand.fast5".
22 2018-06-18 10:19:58,797 Finished processing file "macs_MacBook_local_20170809_FAH11850_MN21227_sequencing_run_AIV_run_1_84332_read_12113_ch_399_strand.fast5".
23 2018-06-18 10:19:58,798 Done.