Mercurial > repos > iuc > vt_variant_tools

comparison vt_normalize.xml @ 1:a5578ce1c0a1 draft

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author iuc
date Tue, 12 Aug 2014 05:36:23 -0400
parents e4d445a95419
children 4ffcf0672e81
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0:e4d445a95419 1:a5578ce1c0a1
18 "${ infile }" 18 "${ infile }"
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <expand macro="stdio" /> 21 <expand macro="stdio" />
22 <inputs> 22 <inputs>
23 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> 23 <param name="infile" type="data" format="vcf" label="VCF file to be normalised" />
24 24
25 <param name="reference_genome" type="select" label="Using reference genome"> 25 <param name="reference_genome" type="select" label="Using reference genome">
26 <options from_data_table="fasta_indexes"> 26 <options from_data_table="fasta_indexes">
27 <filter type="data_meta" ref="infile" key="dbkey" column="1" /> 27 <filter type="data_meta" ref="infile" key="dbkey" column="1" />
28 <validator type="no_options" message="No reference genome is available for the build associated with the selected input dataset" /> 28 <validator type="no_options" message="No reference genome is available for the build associated with the selected input dataset" />