Mercurial > repos > iuc > vsearch

diff masking.xml @ 5:e8401372796a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 78d01e165304e0be6e6fd017b7314465492d7542
author: iuc
date: Thu, 17 Dec 2015 12:51:04 -0500
parents: 24e4f42410e5
children: 50cc0d99b800
--- a/masking.xml	Wed Aug 26 13:34:00 2015 -0400
+++ b/masking.xml	Thu Dec 17 12:51:04 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="vsearch_masking" name="VSearch masking" version="@VERSION@.0">
+<tool id="vsearch_masking" name="VSearch masking" version="@VERSION@.1">
     <description></description>
     <macros>
         <import>vsearch_macros.xml</import>
@@ -10,12 +10,12 @@
 <![CDATA[
     vsearch
         @GENERAL@
-        #if $qmask != 'no':
-            --qmask $qmask
+        #if str( $qmask ) != 'no':
+            --qmask "$qmask"
         #end if
         $hardmask
         --maskfasta "$infile"
-        --output $outfile
+        --output "$outfile"
 
 ]]>
     </command>
@@ -68,10 +68,6 @@
 
 @EXTERNAL_DOCUMENTATION@
 
--------
-
-@REFERENCES@
-
 
 ]]>
     </help>