Mercurial > repos > iuc > virannot_rps2tsv

diff virAnnot_rps2tsv.xml @ 2:0028d42d75ec draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 7036ce0e06b6dc64332b1a5642fc58928523c5c6
author iuc
date Tue, 13 May 2025 11:51:26 +0000
parents 18a168ccd07e
children
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--- a/virAnnot_rps2tsv.xml	Sun Sep 08 14:08:18 2024 +0000
+++ b/virAnnot_rps2tsv.xml	Tue May 13 11:51:26 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="virAnnot_rps2tsv" name="virAnnot Rps2tsv" version="1.1.0+galaxy0" profile="21.05">
+<tool id="virAnnot_rps2tsv" name="virAnnot Rps2tsv" version="@TOOL_VERSION@+galaxy0" profile="21.05">
     <description>Convert xml rpstblast results to tab file with taxonomic informations</description>
     <macros>
         <import>macros.xml</import>
@@ -30,7 +30,7 @@
             <param name="max_evalue" value="0.0001"/>
             <output name="output" file="rps_test.tab">
                 <assert_contents>
-                    <has_n_columns n="10" />
+                    <has_n_columns n="11" />
                     <has_n_lines n="5" />
                     <has_text text="pfam00680, RdRP_1" />
                 </assert_contents>
@@ -42,8 +42,11 @@
 This module takes as input rps XML file from rps motives annotation.
 The standard maximum evalue is 0.0001 [default value].
 The expected result is a tabular file. See example:
-#query_id   query_length    cdd_id  hit_id  evalue  startQ  endQ    frame   description superkingdom
-ds2020-267_120  339 pfam01333   gnl|CDD|366578  0.000848733 197 325 -3  pfam01333, Apocytochr_F_C, Apocytochrome F, C-terminal.  This is a sub-family of cytochrome C. See pfam00034.   Eukaryota(227);Bacteria(73);
+#query_id   query_length    cdd_id  hit_id  evalue  startQ  endQ    frame   description superkingdom    pident
+ds2020-267_4    2297    pfam00680   gnl|CDD|279070  3.12197e-05 995 1873    -2  pfam00680, RdRP_1, RNA dependent RNA polymerase.    Viruses(1);Riboviria(1);Orthornavirae(1);Pisuviricota(1)    16.986
+ds2020-267_5    2029    pfam00680   gnl|CDD|279070  8.86955e-06 840 1706    3   pfam00680, RdRP_1, RNA dependent RNA polymerase.    Viruses(1);Riboviria(1);Orthornavirae(1);Pisuviricota(1)    17.974
+ds2020-267_6    1860    pfam02123   gnl|CDD|280316  1.27376e-17 1147    1764    -1  pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase.  This family includes RNA-dependent RNA polymerase proteins (RdRPs) from Luteovirus, Totivirus and Rotavirus. Viruses(1);Riboviria(1);Orthornavirae(1);Resentoviricetes(1)    23.671
+
 
     ]]></help>
     <expand macro="citations" />