Mercurial > repos > iuc > virannot_otu

comparison test-data/blast2tsv_input.xml @ 0:e924ab4ab00a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
author iuc
date Wed, 21 Aug 2024 13:13:10 +0000
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1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>rpstblastn</BlastOutput_program>
5 <BlastOutput_version>RPSTBLASTN 2.14.1+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db>/data/db/databases/blast/2018-01-22/pfam/Pfam</BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>NODE_1_length_506_cov_10.687361</BlastOutput_query-def>
10 <BlastOutput_query-len>506</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
14 <Parameters_expect>0.0001</Parameters_expect>
15 <Parameters_gap-open>11</Parameters_gap-open>
16 <Parameters_gap-extend>1</Parameters_gap-extend>
17 <Parameters_filter>F</Parameters_filter>
18 </Parameters>
19 </BlastOutput_param>
20 <BlastOutput_iterations>
21 <Iteration>
22 <Iteration_iter-num>1</Iteration_iter-num>
23 <Iteration_query-ID>Query_1</Iteration_query-ID>
24 <Iteration_query-def>NODE_1_length_506_cov_10.687361</Iteration_query-def>
25 <Iteration_query-len>506</Iteration_query-len>
26 <Iteration_hits>
27 </Iteration_hits>
28 <Iteration_stat>
29 <Statistics>
30 <Statistics_db-num>16305</Statistics_db-num>
31 <Statistics_db-len>2821655</Statistics_db-len>
32 <Statistics_hsp-len>80</Statistics_hsp-len>
33 <Statistics_eff-space>133518440</Statistics_eff-space>
34 <Statistics_kappa>0.083353464</Statistics_kappa>
35 <Statistics_lambda>0.267</Statistics_lambda>
36 <Statistics_entropy>0.14</Statistics_entropy>
37 </Statistics>
38 </Iteration_stat>
39 <Iteration_message>No hits found</Iteration_message>
40 </Iteration>
41 <Iteration>
42 <Iteration_iter-num>2</Iteration_iter-num>
43 <Iteration_query-ID>Query_2</Iteration_query-ID>
44 <Iteration_query-def>NODE_2_length_429_cov_3.631016</Iteration_query-def>
45 <Iteration_query-len>429</Iteration_query-len>
46 <Iteration_hits>
47 </Iteration_hits>
48 <Iteration_stat>
49 <Statistics>
50 <Statistics_db-num>16305</Statistics_db-num>
51 <Statistics_db-len>2821655</Statistics_db-len>
52 <Statistics_hsp-len>78</Statistics_hsp-len>
53 <Statistics_eff-space>100741225</Statistics_eff-space>
54 <Statistics_kappa>0.041</Statistics_kappa>
55 <Statistics_lambda>0.267</Statistics_lambda>
56 <Statistics_entropy>0.14</Statistics_entropy>
57 </Statistics>
58 </Iteration_stat>
59 <Iteration_message>No hits found</Iteration_message>
60 </Iteration>
61 <Iteration>
62 <Iteration_iter-num>3</Iteration_iter-num>
63 <Iteration_query-ID>Query_3</Iteration_query-ID>
64 <Iteration_query-def>NODE_3_length_365_cov_1.074194</Iteration_query-def>
65 <Iteration_query-len>365</Iteration_query-len>
66 <Iteration_hits>
67 </Iteration_hits>
68 <Iteration_stat>
69 <Statistics>
70 <Statistics_db-num>16305</Statistics_db-num>
71 <Statistics_db-len>2821655</Statistics_db-len>
72 <Statistics_hsp-len>75</Statistics_hsp-len>
73 <Statistics_eff-space>73543880</Statistics_eff-space>
74 <Statistics_kappa>0.041</Statistics_kappa>
75 <Statistics_lambda>0.267</Statistics_lambda>
76 <Statistics_entropy>0.14</Statistics_entropy>
77 </Statistics>
78 </Iteration_stat>
79 <Iteration_message>No hits found</Iteration_message>
80 </Iteration>
81 <Iteration>
82 <Iteration_iter-num>4</Iteration_iter-num>
83 <Iteration_query-ID>Query_4</Iteration_query-ID>
84 <Iteration_query-def>NODE_4_length_351_cov_1.547297</Iteration_query-def>
85 <Iteration_query-len>351</Iteration_query-len>
86 <Iteration_hits>
87 </Iteration_hits>
88 <Iteration_stat>
89 <Statistics>
90 <Statistics_db-num>16305</Statistics_db-num>
91 <Statistics_db-len>2821655</Statistics_db-len>
92 <Statistics_hsp-len>74</Statistics_hsp-len>
93 <Statistics_eff-space>69448655</Statistics_eff-space>
94 <Statistics_kappa>0.041</Statistics_kappa>
95 <Statistics_lambda>0.267</Statistics_lambda>
96 <Statistics_entropy>0.14</Statistics_entropy>
97 </Statistics>
98 </Iteration_stat>
99 <Iteration_message>No hits found</Iteration_message>
100 </Iteration>
101 <Iteration>
102 <Iteration_iter-num>5</Iteration_iter-num>
103 <Iteration_query-ID>Query_5</Iteration_query-ID>
104 <Iteration_query-def>NODE_5_length_344_cov_3.273356</Iteration_query-def>
105 <Iteration_query-len>344</Iteration_query-len>
106 <Iteration_hits>
107 </Iteration_hits>
108 <Iteration_stat>
109 <Statistics>
110 <Statistics_db-num>16305</Statistics_db-num>
111 <Statistics_db-len>2821655</Statistics_db-len>
112 <Statistics_hsp-len>72</Statistics_hsp-len>
113 <Statistics_eff-space>69203190</Statistics_eff-space>
114 <Statistics_kappa>0.041</Statistics_kappa>
115 <Statistics_lambda>0.267</Statistics_lambda>
116 <Statistics_entropy>0.14</Statistics_entropy>
117 </Statistics>
118 </Iteration_stat>
119 <Iteration_message>No hits found</Iteration_message>
120 </Iteration>
121 <Iteration>
122 <Iteration_iter-num>6</Iteration_iter-num>
123 <Iteration_query-ID>Query_6</Iteration_query-ID>
124 <Iteration_query-def>NODE_6_length_338_cov_1.314488</Iteration_query-def>
125 <Iteration_query-len>338</Iteration_query-len>
126 <Iteration_hits>
127 </Iteration_hits>
128 <Iteration_stat>
129 <Statistics>
130 <Statistics_db-num>16305</Statistics_db-num>
131 <Statistics_db-len>2821655</Statistics_db-len>
132 <Statistics_hsp-len>70</Statistics_hsp-len>
133 <Statistics_eff-space>70572810</Statistics_eff-space>
134 <Statistics_kappa>0.041</Statistics_kappa>
135 <Statistics_lambda>0.267</Statistics_lambda>
136 <Statistics_entropy>0.14</Statistics_entropy>
137 </Statistics>
138 </Iteration_stat>
139 <Iteration_message>No hits found</Iteration_message>
140 </Iteration>
141 <Iteration>
142 <Iteration_iter-num>7</Iteration_iter-num>
143 <Iteration_query-ID>Query_7</Iteration_query-ID>
144 <Iteration_query-def>NODE_7_length_335_cov_1.714286</Iteration_query-def>
145 <Iteration_query-len>335</Iteration_query-len>
146 <Iteration_hits>
147 </Iteration_hits>
148 <Iteration_stat>
149 <Statistics>
150 <Statistics_db-num>16305</Statistics_db-num>
151 <Statistics_db-len>2821655</Statistics_db-len>
152 <Statistics_hsp-len>70</Statistics_hsp-len>
153 <Statistics_eff-space>68892505</Statistics_eff-space>
154 <Statistics_kappa>0.041</Statistics_kappa>
155 <Statistics_lambda>0.267</Statistics_lambda>
156 <Statistics_entropy>0.14</Statistics_entropy>
157 </Statistics>
158 </Iteration_stat>
159 <Iteration_message>No hits found</Iteration_message>
160 </Iteration>
161 <Iteration>
162 <Iteration_iter-num>8</Iteration_iter-num>
163 <Iteration_query-ID>Query_8</Iteration_query-ID>
164 <Iteration_query-def>NODE_8_length_331_cov_0.862319</Iteration_query-def>
165 <Iteration_query-len>331</Iteration_query-len>
166 <Iteration_hits>
167 </Iteration_hits>
168 <Iteration_stat>
169 <Statistics>
170 <Statistics_db-num>16305</Statistics_db-num>
171 <Statistics_db-len>2821655</Statistics_db-len>
172 <Statistics_hsp-len>69</Statistics_hsp-len>
173 <Statistics_eff-space>69561010</Statistics_eff-space>
174 <Statistics_kappa>0.041</Statistics_kappa>
175 <Statistics_lambda>0.267</Statistics_lambda>
176 <Statistics_entropy>0.14</Statistics_entropy>
177 </Statistics>
178 </Iteration_stat>
179 <Iteration_message>No hits found</Iteration_message>
180 </Iteration>
181 <Iteration>
182 <Iteration_iter-num>9</Iteration_iter-num>
183 <Iteration_query-ID>Query_9</Iteration_query-ID>
184 <Iteration_query-def>NODE_9_length_324_cov_2.141264</Iteration_query-def>
185 <Iteration_query-len>324</Iteration_query-len>
186 <Iteration_hits>
187 </Iteration_hits>
188 <Iteration_stat>
189 <Statistics>
190 <Statistics_db-num>16305</Statistics_db-num>
191 <Statistics_db-len>2821655</Statistics_db-len>
192 <Statistics_hsp-len>67</Statistics_hsp-len>
193 <Statistics_eff-space>70898020</Statistics_eff-space>
194 <Statistics_kappa>0.041</Statistics_kappa>
195 <Statistics_lambda>0.267</Statistics_lambda>
196 <Statistics_entropy>0.14</Statistics_entropy>
197 </Statistics>
198 </Iteration_stat>
199 <Iteration_message>No hits found</Iteration_message>
200 </Iteration>
201 <Iteration>
202 <Iteration_iter-num>10</Iteration_iter-num>
203 <Iteration_query-ID>Query_10</Iteration_query-ID>
204 <Iteration_query-def>NODE_10_length_324_cov_1.371747</Iteration_query-def>
205 <Iteration_query-len>324</Iteration_query-len>
206 <Iteration_hits>
207 </Iteration_hits>
208 <Iteration_stat>
209 <Statistics>
210 <Statistics_db-num>16305</Statistics_db-num>
211 <Statistics_db-len>2821655</Statistics_db-len>
212 <Statistics_hsp-len>67</Statistics_hsp-len>
213 <Statistics_eff-space>70898020</Statistics_eff-space>
214 <Statistics_kappa>0.041</Statistics_kappa>
215 <Statistics_lambda>0.267</Statistics_lambda>
216 <Statistics_entropy>0.14</Statistics_entropy>
217 </Statistics>
218 </Iteration_stat>
219 <Iteration_message>No hits found</Iteration_message>
220 </Iteration>
221 <Iteration>
222 <Iteration_iter-num>11</Iteration_iter-num>
223 <Iteration_query-ID>Query_11</Iteration_query-ID>
224 <Iteration_query-def>NODE_11_length_317_cov_1.125954</Iteration_query-def>
225 <Iteration_query-len>317</Iteration_query-len>
226 <Iteration_hits>
227 </Iteration_hits>
228 <Iteration_stat>
229 <Statistics>
230 <Statistics_db-num>16305</Statistics_db-num>
231 <Statistics_db-len>2821655</Statistics_db-len>
232 <Statistics_hsp-len>65</Statistics_hsp-len>
233 <Statistics_eff-space>70473200</Statistics_eff-space>
234 <Statistics_kappa>0.041</Statistics_kappa>
235 <Statistics_lambda>0.267</Statistics_lambda>
236 <Statistics_entropy>0.14</Statistics_entropy>
237 </Statistics>
238 </Iteration_stat>
239 <Iteration_message>No hits found</Iteration_message>
240 </Iteration>
241 <Iteration>
242 <Iteration_iter-num>12</Iteration_iter-num>
243 <Iteration_query-ID>Query_12</Iteration_query-ID>
244 <Iteration_query-def>NODE_12_length_311_cov_1.535156</Iteration_query-def>
245 <Iteration_query-len>311</Iteration_query-len>
246 <Iteration_hits>
247 </Iteration_hits>
248 <Iteration_stat>
249 <Statistics>
250 <Statistics_db-num>16305</Statistics_db-num>
251 <Statistics_db-len>2821655</Statistics_db-len>
252 <Statistics_hsp-len>64</Statistics_hsp-len>
253 <Statistics_eff-space>69347265</Statistics_eff-space>
254 <Statistics_kappa>0.041</Statistics_kappa>
255 <Statistics_lambda>0.267</Statistics_lambda>
256 <Statistics_entropy>0.14</Statistics_entropy>
257 </Statistics>
258 </Iteration_stat>
259 <Iteration_message>No hits found</Iteration_message>
260 </Iteration>
261 <Iteration>
262 <Iteration_iter-num>13</Iteration_iter-num>
263 <Iteration_query-ID>Query_13</Iteration_query-ID>
264 <Iteration_query-def>NODE_13_length_295_cov_0.945833</Iteration_query-def>
265 <Iteration_query-len>295</Iteration_query-len>
266 <Iteration_hits>
267 <Hit>
268 <Hit_num>1</Hit_num>
269 <Hit_id>gnl|CDD|316155</Hit_id>
270 <Hit_def>pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This is a family of the conserved region of Leucine-tRNA ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.</Hit_def>
271 <Hit_accession>316155</Hit_accession>
272 <Hit_len>184</Hit_len>
273 <Hit_hsps>
274 <Hsp>
275 <Hsp_num>1</Hsp_num>
276 <Hsp_bit-score>38.6378</Hsp_bit-score>
277 <Hsp_score>91</Hsp_score>
278 <Hsp_evalue>2.277e-05</Hsp_evalue>
279 <Hsp_query-from>159</Hsp_query-from>
280 <Hsp_query-to>269</Hsp_query-to>
281 <Hsp_hit-from>128</Hsp_hit-from>
282 <Hsp_hit-to>168</Hsp_hit-to>
283 <Hsp_query-frame>3</Hsp_query-frame>
284 <Hsp_hit-frame>0</Hsp_hit-frame>
285 <Hsp_identity>17</Hsp_identity>
286 <Hsp_positive>22</Hsp_positive>
287 <Hsp_gaps>4</Hsp_gaps>
288 <Hsp_align-len>41</Hsp_align-len>
289 <Hsp_qseq>FIKQYGLPFNPVIAPEDAELTDEQIQSYINTA---NS-FFN</Hsp_qseq>
290 <Hsp_hseq>FAKKYNLPIKPVIKPEDGDLPDIMTEAYTEEGILVNSGEFD</Hsp_hseq>
291 <Hsp_midline>F K+Y LP PVI PED +L D ++Y NS F+</Hsp_midline>
292 </Hsp>
293 </Hit_hsps>
294 </Hit>
295 </Iteration_hits>
296 <Iteration_stat>
297 <Statistics>
298 <Statistics_db-num>16305</Statistics_db-num>
299 <Statistics_db-len>2821655</Statistics_db-len>
300 <Statistics_hsp-len>60</Statistics_hsp-len>
301 <Statistics_eff-space>70047490</Statistics_eff-space>
302 <Statistics_kappa>0.041</Statistics_kappa>
303 <Statistics_lambda>0.267</Statistics_lambda>
304 <Statistics_entropy>0.14</Statistics_entropy>
305 </Statistics>
306 </Iteration_stat>
307 </Iteration>
308 <Iteration>
309 <Iteration_iter-num>14</Iteration_iter-num>
310 <Iteration_query-ID>Query_14</Iteration_query-ID>
311 <Iteration_query-def>NODE_14_length_294_cov_1.891213</Iteration_query-def>
312 <Iteration_query-len>294</Iteration_query-len>
313 <Iteration_hits>
314 </Iteration_hits>
315 <Iteration_stat>
316 <Statistics>
317 <Statistics_db-num>16305</Statistics_db-num>
318 <Statistics_db-len>2821655</Statistics_db-len>
319 <Statistics_hsp-len>60</Statistics_hsp-len>
320 <Statistics_eff-space>70047490</Statistics_eff-space>
321 <Statistics_kappa>0.041</Statistics_kappa>
322 <Statistics_lambda>0.267</Statistics_lambda>
323 <Statistics_entropy>0.14</Statistics_entropy>
324 </Statistics>
325 </Iteration_stat>
326 <Iteration_message>No hits found</Iteration_message>
327 </Iteration>
328 <Iteration>
329 <Iteration_iter-num>15</Iteration_iter-num>
330 <Iteration_query-ID>Query_15</Iteration_query-ID>
331 <Iteration_query-def>NODE_15_length_280_cov_1.413333</Iteration_query-def>
332 <Iteration_query-len>280</Iteration_query-len>
333 <Iteration_hits>
334 </Iteration_hits>
335 <Iteration_stat>
336 <Statistics>
337 <Statistics_db-num>16305</Statistics_db-num>
338 <Statistics_db-len>2821655</Statistics_db-len>
339 <Statistics_hsp-len>56</Statistics_hsp-len>
340 <Statistics_eff-space>70617275</Statistics_eff-space>
341 <Statistics_kappa>0.041</Statistics_kappa>
342 <Statistics_lambda>0.267</Statistics_lambda>
343 <Statistics_entropy>0.14</Statistics_entropy>
344 </Statistics>
345 </Iteration_stat>
346 <Iteration_message>No hits found</Iteration_message>
347 </Iteration>
348 <Iteration>
349 <Iteration_iter-num>16</Iteration_iter-num>
350 <Iteration_query-ID>Query_16</Iteration_query-ID>
351 <Iteration_query-def>NODE_16_length_278_cov_0.901345</Iteration_query-def>
352 <Iteration_query-len>278</Iteration_query-len>
353 <Iteration_hits>
354 <Hit>
355 <Hit_num>1</Hit_num>
356 <Hit_id>gnl|CDD|306845</Hit_id>
357 <Hit_def>pfam00421, PSII, Photosystem II protein. </Hit_def>
358 <Hit_accession>306845</Hit_accession>
359 <Hit_len>500</Hit_len>
360 <Hit_hsps>
361 <Hsp>
362 <Hsp_num>1</Hsp_num>
363 <Hsp_bit-score>132.634</Hsp_bit-score>
364 <Hsp_score>334</Hsp_score>
365 <Hsp_evalue>7.65615e-39</Hsp_evalue>
366 <Hsp_query-from>34</Hsp_query-from>
367 <Hsp_query-to>270</Hsp_query-to>
368 <Hsp_hit-from>388</Hsp_hit-from>
369 <Hsp_hit-to>466</Hsp_hit-to>
370 <Hsp_query-frame>1</Hsp_query-frame>
371 <Hsp_hit-frame>0</Hsp_hit-frame>
372 <Hsp_identity>52</Hsp_identity>
373 <Hsp_positive>61</Hsp_positive>
374 <Hsp_gaps>0</Hsp_gaps>
375 <Hsp_align-len>79</Hsp_align-len>
376 <Hsp_qseq>SRYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFQTH</Hsp_qseq>
377 <Hsp_hseq>SGYSLEQTGVTVQFYGGELNGQTFTDPWQVKRYARHAQLGELNSVDRVTTESDGVFRVSPRGWLAFSHFCFALLFFFGH</Hsp_hseq>
378 <Hsp_midline>S YS+EQ GVTV+FYGGELNG +++DP VK+YAR AQLGE+ +DR T +SDGVFR SPRGW F H FALLFF H</Hsp_midline>
379 </Hsp>
380 </Hit_hsps>
381 </Hit>
382 </Iteration_hits>
383 <Iteration_stat>
384 <Statistics>
385 <Statistics_db-num>16305</Statistics_db-num>
386 <Statistics_db-len>2821655</Statistics_db-len>
387 <Statistics_hsp-len>55</Statistics_hsp-len>
388 <Statistics_eff-space>71220560</Statistics_eff-space>
389 <Statistics_kappa>0.041</Statistics_kappa>
390 <Statistics_lambda>0.267</Statistics_lambda>
391 <Statistics_entropy>0.14</Statistics_entropy>
392 </Statistics>
393 </Iteration_stat>
394 </Iteration>
395 <Iteration>
396 <Iteration_iter-num>17</Iteration_iter-num>
397 <Iteration_query-ID>Query_17</Iteration_query-ID>
398 <Iteration_query-def>NODE_17_length_277_cov_1.540541</Iteration_query-def>
399 <Iteration_query-len>277</Iteration_query-len>
400 <Iteration_hits>
401 </Iteration_hits>
402 <Iteration_stat>
403 <Statistics>
404 <Statistics_db-num>16305</Statistics_db-num>
405 <Statistics_db-len>2821655</Statistics_db-len>
406 <Statistics_hsp-len>55</Statistics_hsp-len>
407 <Statistics_eff-space>71220560</Statistics_eff-space>
408 <Statistics_kappa>0.041</Statistics_kappa>
409 <Statistics_lambda>0.267</Statistics_lambda>
410 <Statistics_entropy>0.14</Statistics_entropy>
411 </Statistics>
412 </Iteration_stat>
413 <Iteration_message>No hits found</Iteration_message>
414 </Iteration>
415 <Iteration>
416 <Iteration_iter-num>18</Iteration_iter-num>
417 <Iteration_query-ID>Query_18</Iteration_query-ID>
418 <Iteration_query-def>NODE_18_length_274_cov_3.872146</Iteration_query-def>
419 <Iteration_query-len>274</Iteration_query-len>
420 <Iteration_hits>
421 </Iteration_hits>
422 <Iteration_stat>
423 <Statistics>
424 <Statistics_db-num>16305</Statistics_db-num>
425 <Statistics_db-len>2821655</Statistics_db-len>
426 <Statistics_hsp-len>55</Statistics_hsp-len>
427 <Statistics_eff-space>69295680</Statistics_eff-space>
428 <Statistics_kappa>0.041</Statistics_kappa>
429 <Statistics_lambda>0.267</Statistics_lambda>
430 <Statistics_entropy>0.14</Statistics_entropy>
431 </Statistics>
432 </Iteration_stat>
433 <Iteration_message>No hits found</Iteration_message>
434 </Iteration>
435 <Iteration>
436 <Iteration_iter-num>19</Iteration_iter-num>
437 <Iteration_query-ID>Query_19</Iteration_query-ID>
438 <Iteration_query-def>NODE_19_length_271_cov_0.879630</Iteration_query-def>
439 <Iteration_query-len>271</Iteration_query-len>
440 <Iteration_hits>
441 <Hit>
442 <Hit_num>1</Hit_num>
443 <Hit_id>gnl|CDD|306845</Hit_id>
444 <Hit_def>pfam00421, PSII, Photosystem II protein. </Hit_def>
445 <Hit_accession>306845</Hit_accession>
446 <Hit_len>500</Hit_len>
447 <Hit_hsps>
448 <Hsp>
449 <Hsp_num>1</Hsp_num>
450 <Hsp_bit-score>56.3644</Hsp_bit-score>
451 <Hsp_score>136</Hsp_score>
452 <Hsp_evalue>1.69015e-11</Hsp_evalue>
453 <Hsp_query-from>82</Hsp_query-from>
454 <Hsp_query-to>252</Hsp_query-to>
455 <Hsp_hit-from>165</Hsp_hit-from>
456 <Hsp_hit-to>224</Hsp_hit-to>
457 <Hsp_query-frame>1</Hsp_query-frame>
458 <Hsp_hit-frame>0</Hsp_hit-frame>
459 <Hsp_identity>23</Hsp_identity>
460 <Hsp_positive>34</Hsp_positive>
461 <Hsp_gaps>23</Hsp_gaps>
462 <Hsp_align-len>70</Hsp_align-len>
463 <Hsp_qseq>ITNLTLNPSVIFGYL-------------LKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTK</Hsp_qseq>
464 <Hsp_hseq>VSDPTLDPGVIYGYTGHVQPVAPVWGAEGFSPFGPGG----------IVGHHIAAGILGIIGGIFHITTR</Hsp_hseq>
465 <Hsp_midline>+++ TL+P VI+GY SPFG G I+G H+ G + I+GGI+HI T+</Hsp_midline>
466 </Hsp>
467 </Hit_hsps>
468 </Hit>
469 </Iteration_hits>
470 <Iteration_stat>
471 <Statistics>
472 <Statistics_db-num>16305</Statistics_db-num>
473 <Statistics_db-len>2821655</Statistics_db-len>
474 <Statistics_hsp-len>54</Statistics_hsp-len>
475 <Statistics_eff-space>69882660</Statistics_eff-space>
476 <Statistics_kappa>0.041</Statistics_kappa>
477 <Statistics_lambda>0.267</Statistics_lambda>
478 <Statistics_entropy>0.14</Statistics_entropy>
479 </Statistics>
480 </Iteration_stat>
481 </Iteration>
482 <Iteration>
483 <Iteration_iter-num>20</Iteration_iter-num>
484 <Iteration_query-ID>Query_20</Iteration_query-ID>
485 <Iteration_query-def>NODE_20_length_267_cov_1.429245</Iteration_query-def>
486 <Iteration_query-len>267</Iteration_query-len>
487 <Iteration_hits>
488 <Hit>
489 <Hit_num>1</Hit_num>
490 <Hit_id>gnl|CDD|287774</Hit_id>
491 <Hit_def>pfam10839, DUF2647, Protein of unknown function (DUF2647). This eukaryotic family of proteins are annotated as ycf68 but have no known function.</Hit_def>
492 <Hit_accession>287774</Hit_accession>
493 <Hit_len>70</Hit_len>
494 <Hit_hsps>
495 <Hsp>
496 <Hsp_num>1</Hsp_num>
497 <Hsp_bit-score>48.4966</Hsp_bit-score>
498 <Hsp_score>115</Hsp_score>
499 <Hsp_evalue>7.70073e-10</Hsp_evalue>
500 <Hsp_query-from>165</Hsp_query-from>
501 <Hsp_query-to>233</Hsp_query-to>
502 <Hsp_hit-from>22</Hsp_hit-from>
503 <Hsp_hit-to>44</Hsp_hit-to>
504 <Hsp_query-frame>-2</Hsp_query-frame>
505 <Hsp_hit-frame>0</Hsp_hit-frame>
506 <Hsp_identity>21</Hsp_identity>
507 <Hsp_positive>22</Hsp_positive>
508 <Hsp_gaps>0</Hsp_gaps>
509 <Hsp_align-len>23</Hsp_align-len>
510 <Hsp_qseq>GAIQVRSNVDPTFYSLVGSGRSG</Hsp_qseq>
511 <Hsp_hseq>GAIQVRSHVDLTFYSLVGSGRSG</Hsp_hseq>
512 <Hsp_midline>GAIQVRS+VD TFYSLVGSGRSG</Hsp_midline>
513 </Hsp>
514 <Hsp>
515 <Hsp_num>2</Hsp_num>
516 <Hsp_bit-score>43.1038</Hsp_bit-score>
517 <Hsp_score>101</Hsp_score>
518 <Hsp_evalue>7.90575e-08</Hsp_evalue>
519 <Hsp_query-from>88</Hsp_query-from>
520 <Hsp_query-to>222</Hsp_query-to>
521 <Hsp_hit-from>22</Hsp_hit-from>
522 <Hsp_hit-to>70</Hsp_hit-to>
523 <Hsp_query-frame>-1</Hsp_query-frame>
524 <Hsp_hit-frame>0</Hsp_hit-frame>
525 <Hsp_identity>23</Hsp_identity>
526 <Hsp_positive>27</Hsp_positive>
527 <Hsp_gaps>4</Hsp_gaps>
528 <Hsp_align-len>49</Hsp_align-len>
529 <Hsp_qseq>GEIQCRSN----FLFTRGIRAVREGPPWLLSSRESIHPLSVYGQLSLEH</Hsp_qseq>
530 <Hsp_hseq>GAIQVRSHVDLTFYSLVGSGRSGGGPPALLFSREHIHLISVWGAISLAH</Hsp_hseq>
531 <Hsp_midline>G IQ RS+ F G GPP LL SRE IH +SV+G +SL H</Hsp_midline>
532 </Hsp>
533 <Hsp>
534 <Hsp_num>3</Hsp_num>
535 <Hsp_bit-score>42.7186</Hsp_bit-score>
536 <Hsp_score>100</Hsp_score>
537 <Hsp_evalue>1.07047e-07</Hsp_evalue>
538 <Hsp_query-from>86</Hsp_query-from>
539 <Hsp_query-to>175</Hsp_query-to>
540 <Hsp_hit-from>41</Hsp_hit-from>
541 <Hsp_hit-to>70</Hsp_hit-to>
542 <Hsp_query-frame>-3</Hsp_query-frame>
543 <Hsp_hit-frame>0</Hsp_hit-frame>
544 <Hsp_identity>17</Hsp_identity>
545 <Hsp_positive>18</Hsp_positive>
546 <Hsp_gaps>0</Hsp_gaps>
547 <Hsp_align-len>30</Hsp_align-len>
548 <Hsp_qseq>GGPGGTTMAPLFSRIHTSLISIWTAISRAQ</Hsp_qseq>
549 <Hsp_hseq>GRSGGGPPALLFSREHIHLISVWGAISLAH</Hsp_hseq>
550 <Hsp_midline>G GG A LFSR H LIS+W AIS A </Hsp_midline>
551 </Hsp>
552 </Hit_hsps>
553 </Hit>
554 </Iteration_hits>
555 <Iteration_stat>
556 <Statistics>
557 <Statistics_db-num>16305</Statistics_db-num>
558 <Statistics_db-len>2821655</Statistics_db-len>
559 <Statistics_hsp-len>53</Statistics_hsp-len>
560 <Statistics_eff-space>70469640</Statistics_eff-space>
561 <Statistics_kappa>0.041</Statistics_kappa>
562 <Statistics_lambda>0.267</Statistics_lambda>
563 <Statistics_entropy>0.14</Statistics_entropy>
564 </Statistics>
565 </Iteration_stat>
566 </Iteration>
567 <Iteration>
568 <Iteration_iter-num>21</Iteration_iter-num>
569 <Iteration_query-ID>Query_21</Iteration_query-ID>
570 <Iteration_query-def>NODE_21_length_263_cov_1.177885</Iteration_query-def>
571 <Iteration_query-len>263</Iteration_query-len>
572 <Iteration_hits>
573 </Iteration_hits>
574 <Iteration_stat>
575 <Statistics>
576 <Statistics_db-num>16305</Statistics_db-num>
577 <Statistics_db-len>2821655</Statistics_db-len>
578 <Statistics_hsp-len>52</Statistics_hsp-len>
579 <Statistics_eff-space>69082825</Statistics_eff-space>
580 <Statistics_kappa>0.041</Statistics_kappa>
581 <Statistics_lambda>0.267</Statistics_lambda>
582 <Statistics_entropy>0.14</Statistics_entropy>
583 </Statistics>
584 </Iteration_stat>
585 <Iteration_message>No hits found</Iteration_message>
586 </Iteration>
587 <Iteration>
588 <Iteration_iter-num>22</Iteration_iter-num>
589 <Iteration_query-ID>Query_22</Iteration_query-ID>
590 <Iteration_query-def>NODE_22_length_262_cov_1.053140</Iteration_query-def>
591 <Iteration_query-len>262</Iteration_query-len>
592 <Iteration_hits>
593 <Hit>
594 <Hit_num>1</Hit_num>
595 <Hit_id>gnl|CDD|306604</Hit_id>
596 <Hit_def>pfam00124, Photo_RC, Photosynthetic reaction centre protein. </Hit_def>
597 <Hit_accession>306604</Hit_accession>
598 <Hit_len>258</Hit_len>
599 <Hit_hsps>
600 <Hsp>
601 <Hsp_num>1</Hsp_num>
602 <Hsp_bit-score>99.6256</Hsp_bit-score>
603 <Hsp_score>249</Hsp_score>
604 <Hsp_evalue>4.94039e-28</Hsp_evalue>
605 <Hsp_query-from>31</Hsp_query-from>
606 <Hsp_query-to>228</Hsp_query-to>
607 <Hsp_hit-from>77</Hsp_hit-from>
608 <Hsp_hit-to>142</Hsp_hit-to>
609 <Hsp_query-frame>1</Hsp_query-frame>
610 <Hsp_hit-frame>0</Hsp_hit-frame>
611 <Hsp_identity>27</Hsp_identity>
612 <Hsp_positive>41</Hsp_positive>
613 <Hsp_gaps>0</Hsp_gaps>
614 <Hsp_align-len>66</Hsp_align-len>
615 <Hsp_qseq>SVACYMGREWEVSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQ</Hsp_qseq>
616 <Hsp_hseq>AFISWWLREYEIARKLGMGPHIAWAFSAAIAAYLSLGLIRPILMGSWSEGFPLGIFPHLDWTSNFS</Hsp_hseq>
617 <Hsp_midline>+ + RE+E++ +LGM P IA A+SA +AA ++ LI PI GS+S+G PLGI ++ F </Hsp_midline>
618 </Hsp>
619 </Hit_hsps>
620 </Hit>
621 </Iteration_hits>
622 <Iteration_stat>
623 <Statistics>
624 <Statistics_db-num>16305</Statistics_db-num>
625 <Statistics_db-len>2821655</Statistics_db-len>
626 <Statistics_hsp-len>52</Statistics_hsp-len>
627 <Statistics_eff-space>69082825</Statistics_eff-space>
628 <Statistics_kappa>0.041</Statistics_kappa>
629 <Statistics_lambda>0.267</Statistics_lambda>
630 <Statistics_entropy>0.14</Statistics_entropy>
631 </Statistics>
632 </Iteration_stat>
633 </Iteration>
634 <Iteration>
635 <Iteration_iter-num>23</Iteration_iter-num>
636 <Iteration_query-ID>Query_23</Iteration_query-ID>
637 <Iteration_query-def>NODE_23_length_260_cov_1.590244</Iteration_query-def>
638 <Iteration_query-len>260</Iteration_query-len>
639 <Iteration_hits>
640 </Iteration_hits>
641 <Iteration_stat>
642 <Statistics>
643 <Statistics_db-num>16305</Statistics_db-num>
644 <Statistics_db-len>2821655</Statistics_db-len>
645 <Statistics_hsp-len>51</Statistics_hsp-len>
646 <Statistics_eff-space>69653500</Statistics_eff-space>
647 <Statistics_kappa>0.041</Statistics_kappa>
648 <Statistics_lambda>0.267</Statistics_lambda>
649 <Statistics_entropy>0.14</Statistics_entropy>
650 </Statistics>
651 </Iteration_stat>
652 <Iteration_message>No hits found</Iteration_message>
653 </Iteration>
654 <Iteration>
655 <Iteration_iter-num>24</Iteration_iter-num>
656 <Iteration_query-ID>Query_24</Iteration_query-ID>
657 <Iteration_query-def>NODE_24_length_258_cov_0.935961</Iteration_query-def>
658 <Iteration_query-len>258</Iteration_query-len>
659 <Iteration_hits>
660 <Hit>
661 <Hit_num>1</Hit_num>
662 <Hit_id>gnl|CDD|307679</Hit_id>
663 <Hit_def>pfam01660, Vmethyltransf, Viral methyltransferase. This RNA methyltransferase domain is found in a wide range of ssRNA viruses, including Hordei-, Tobra-, Tobamo-, Bromo-, Clostero- and Caliciviruses. This methyltransferase is involved in mRNA capping. Capping of mRNA enhances its stability. This usually occurs in the nucleus. Therefore, many viruses that replicate in the cytoplasm encode their own. This is a specific guanine-7-methyltransferase domain involved in viral mRNA cap0 synthesis. Specificity for guanine 7 position is shown by NMR in and in vivo role in cap synthesis. Based on secondary structure prediction, the basic fold is believed to be similar to the common AdoMet-dependent methyltransferase fold. A curious feature of this methyltransferase domain is that it together with flanking sequences seems to have guanylyltransferase activity coupled to the methyltransferase activity. The domain is found throughout the so-called Alphavirus superfamily, (including alphaviruses and several other groups). It forms the defining, unique feature of this superfamily.</Hit_def>
664 <Hit_accession>307679</Hit_accession>
665 <Hit_len>305</Hit_len>
666 <Hit_hsps>
667 <Hsp>
668 <Hsp_num>1</Hsp_num>
669 <Hsp_bit-score>65.0021</Hsp_bit-score>
670 <Hsp_score>159</Hsp_score>
671 <Hsp_evalue>8.38713e-15</Hsp_evalue>
672 <Hsp_query-from>27</Hsp_query-from>
673 <Hsp_query-to>230</Hsp_query-to>
674 <Hsp_hit-from>226</Hsp_hit-from>
675 <Hsp_hit-to>296</Hsp_hit-to>
676 <Hsp_query-frame>3</Hsp_query-frame>
677 <Hsp_hit-frame>0</Hsp_hit-frame>
678 <Hsp_identity>28</Hsp_identity>
679 <Hsp_positive>38</Hsp_positive>
680 <Hsp_gaps>3</Hsp_gaps>
681 <Hsp_align-len>71</Hsp_align-len>
682 <Hsp_qseq>AHHLVAITRGEA--ENCKHRSFGPFEATASESLAKL-CPDYPICLPVPYDVINKVYRYLRTLKKPDVQSPH</Hsp_qseq>
683 <Hsp_hseq>AHHLFKITRGDGLTLKPDSRTFGPFEAVLLPKIFVPRVLNYIRGKPIPLTVVNKLFSYLRSLKKRVVINGM</Hsp_hseq>
684 <Hsp_midline>AHHL ITRG+ R+FGPFEA + +Y P+P V+NK++ YLR+LKK V + </Hsp_midline>
685 </Hsp>
686 </Hit_hsps>
687 </Hit>
688 </Iteration_hits>
689 <Iteration_stat>
690 <Statistics>
691 <Statistics_db-num>16305</Statistics_db-num>
692 <Statistics_db-len>2821655</Statistics_db-len>
693 <Statistics_hsp-len>51</Statistics_hsp-len>
694 <Statistics_eff-space>69653500</Statistics_eff-space>
695 <Statistics_kappa>0.041</Statistics_kappa>
696 <Statistics_lambda>0.267</Statistics_lambda>
697 <Statistics_entropy>0.14</Statistics_entropy>
698 </Statistics>
699 </Iteration_stat>
700 </Iteration>
701 <Iteration>
702 <Iteration_iter-num>25</Iteration_iter-num>
703 <Iteration_query-ID>Query_25</Iteration_query-ID>
704 <Iteration_query-def>NODE_25_length_256_cov_0.945274</Iteration_query-def>
705 <Iteration_query-len>256</Iteration_query-len>
706 <Iteration_hits>
707 </Iteration_hits>
708 <Iteration_stat>
709 <Statistics>
710 <Statistics_db-num>16305</Statistics_db-num>
711 <Statistics_db-len>2821655</Statistics_db-len>
712 <Statistics_hsp-len>50</Statistics_hsp-len>
713 <Statistics_eff-space>70224175</Statistics_eff-space>
714 <Statistics_kappa>0.041</Statistics_kappa>
715 <Statistics_lambda>0.267</Statistics_lambda>
716 <Statistics_entropy>0.14</Statistics_entropy>
717 </Statistics>
718 </Iteration_stat>
719 <Iteration_message>No hits found</Iteration_message>
720 </Iteration>
721 <Iteration>
722 <Iteration_iter-num>26</Iteration_iter-num>
723 <Iteration_query-ID>Query_26</Iteration_query-ID>
724 <Iteration_query-def>NODE_26_length_256_cov_0.895522</Iteration_query-def>
725 <Iteration_query-len>256</Iteration_query-len>
726 <Iteration_hits>
727 </Iteration_hits>
728 <Iteration_stat>
729 <Statistics>
730 <Statistics_db-num>16305</Statistics_db-num>
731 <Statistics_db-len>2821655</Statistics_db-len>
732 <Statistics_hsp-len>50</Statistics_hsp-len>
733 <Statistics_eff-space>70224175</Statistics_eff-space>
734 <Statistics_kappa>0.041</Statistics_kappa>
735 <Statistics_lambda>0.267</Statistics_lambda>
736 <Statistics_entropy>0.14</Statistics_entropy>
737 </Statistics>
738 </Iteration_stat>
739 <Iteration_message>No hits found</Iteration_message>
740 </Iteration>
741 <Iteration>
742 <Iteration_iter-num>27</Iteration_iter-num>
743 <Iteration_query-ID>Query_27</Iteration_query-ID>
744 <Iteration_query-def>NODE_27_length_254_cov_0.793970</Iteration_query-def>
745 <Iteration_query-len>254</Iteration_query-len>
746 <Iteration_hits>
747 </Iteration_hits>
748 <Iteration_stat>
749 <Statistics>
750 <Statistics_db-num>16305</Statistics_db-num>
751 <Statistics_db-len>2821655</Statistics_db-len>
752 <Statistics_hsp-len>49</Statistics_hsp-len>
753 <Statistics_eff-space>70794850</Statistics_eff-space>
754 <Statistics_kappa>0.041</Statistics_kappa>
755 <Statistics_lambda>0.267</Statistics_lambda>
756 <Statistics_entropy>0.14</Statistics_entropy>
757 </Statistics>
758 </Iteration_stat>
759 <Iteration_message>No hits found</Iteration_message>
760 </Iteration>
761 <Iteration>
762 <Iteration_iter-num>28</Iteration_iter-num>
763 <Iteration_query-ID>Query_28</Iteration_query-ID>
764 <Iteration_query-def>NODE_28_length_253_cov_1.313131</Iteration_query-def>
765 <Iteration_query-len>253</Iteration_query-len>
766 <Iteration_hits>
767 </Iteration_hits>
768 <Iteration_stat>
769 <Statistics>
770 <Statistics_db-num>16305</Statistics_db-num>
771 <Statistics_db-len>2821655</Statistics_db-len>
772 <Statistics_hsp-len>49</Statistics_hsp-len>
773 <Statistics_eff-space>70794850</Statistics_eff-space>
774 <Statistics_kappa>0.041</Statistics_kappa>
775 <Statistics_lambda>0.267</Statistics_lambda>
776 <Statistics_entropy>0.14</Statistics_entropy>
777 </Statistics>
778 </Iteration_stat>
779 <Iteration_message>No hits found</Iteration_message>
780 </Iteration>
781 <Iteration>
782 <Iteration_iter-num>29</Iteration_iter-num>
783 <Iteration_query-ID>Query_29</Iteration_query-ID>
784 <Iteration_query-def>NODE_29_length_250_cov_0.851282</Iteration_query-def>
785 <Iteration_query-len>250</Iteration_query-len>
786 <Iteration_hits>
787 <Hit>
788 <Hit_num>1</Hit_num>
789 <Hit_id>gnl|CDD|278700</Hit_id>
790 <Hit_def>pfam00283, Cytochrom_B559, Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits. </Hit_def>
791 <Hit_accession>278700</Hit_accession>
792 <Hit_len>29</Hit_len>
793 <Hit_hsps>
794 <Hsp>
795 <Hsp_num>1</Hsp_num>
796 <Hsp_bit-score>42.0012</Hsp_bit-score>
797 <Hsp_score>99</Hsp_score>
798 <Hsp_evalue>7.31211e-08</Hsp_evalue>
799 <Hsp_query-from>79</Hsp_query-from>
800 <Hsp_query-to>165</Hsp_query-to>
801 <Hsp_hit-from>1</Hsp_hit-from>
802 <Hsp_hit-to>29</Hsp_hit-to>
803 <Hsp_query-frame>1</Hsp_query-frame>
804 <Hsp_hit-frame>0</Hsp_hit-frame>
805 <Hsp_identity>17</Hsp_identity>
806 <Hsp_positive>19</Hsp_positive>
807 <Hsp_gaps>0</Hsp_gaps>
808 <Hsp_align-len>29</Hsp_align-len>
809 <Hsp_qseq>MTIDRTYPIFTVRWLAVHGLAVPTVSFLG</Hsp_qseq>
810 <Hsp_hseq>GERPFSYPITTVRWWAIHALTVPTVFFLG</Hsp_hseq>
811 <Hsp_midline> +YPI TVRW A+H L VPTV FLG</Hsp_midline>
812 </Hsp>
813 </Hit_hsps>
814 </Hit>
815 </Iteration_hits>
816 <Iteration_stat>
817 <Statistics>
818 <Statistics_db-num>16305</Statistics_db-num>
819 <Statistics_db-len>2821655</Statistics_db-len>
820 <Statistics_hsp-len>48</Statistics_hsp-len>
821 <Statistics_eff-space>71365525</Statistics_eff-space>
822 <Statistics_kappa>0.041</Statistics_kappa>
823 <Statistics_lambda>0.267</Statistics_lambda>
824 <Statistics_entropy>0.14</Statistics_entropy>
825 </Statistics>
826 </Iteration_stat>
827 </Iteration>
828 <Iteration>
829 <Iteration_iter-num>30</Iteration_iter-num>
830 <Iteration_query-ID>Query_30</Iteration_query-ID>
831 <Iteration_query-def>NODE_30_length_249_cov_1.298969</Iteration_query-def>
832 <Iteration_query-len>249</Iteration_query-len>
833 <Iteration_hits>
834 </Iteration_hits>
835 <Iteration_stat>
836 <Statistics>
837 <Statistics_db-num>16305</Statistics_db-num>
838 <Statistics_db-len>2821655</Statistics_db-len>
839 <Statistics_hsp-len>48</Statistics_hsp-len>
840 <Statistics_eff-space>71365525</Statistics_eff-space>
841 <Statistics_kappa>0.041</Statistics_kappa>
842 <Statistics_lambda>0.267</Statistics_lambda>
843 <Statistics_entropy>0.14</Statistics_entropy>
844 </Statistics>
845 </Iteration_stat>
846 <Iteration_message>No hits found</Iteration_message>
847 </Iteration>
848 <Iteration>
849 <Iteration_iter-num>31</Iteration_iter-num>
850 <Iteration_query-ID>Query_31</Iteration_query-ID>
851 <Iteration_query-def>NODE_31_length_249_cov_0.979381</Iteration_query-def>
852 <Iteration_query-len>249</Iteration_query-len>
853 <Iteration_hits>
854 </Iteration_hits>
855 <Iteration_stat>
856 <Statistics>
857 <Statistics_db-num>16305</Statistics_db-num>
858 <Statistics_db-len>2821655</Statistics_db-len>
859 <Statistics_hsp-len>48</Statistics_hsp-len>
860 <Statistics_eff-space>71365525</Statistics_eff-space>
861 <Statistics_kappa>0.041</Statistics_kappa>
862 <Statistics_lambda>0.267</Statistics_lambda>
863 <Statistics_entropy>0.14</Statistics_entropy>
864 </Statistics>
865 </Iteration_stat>
866 <Iteration_message>No hits found</Iteration_message>
867 </Iteration>
868 <Iteration>
869 <Iteration_iter-num>32</Iteration_iter-num>
870 <Iteration_query-ID>Query_32</Iteration_query-ID>
871 <Iteration_query-def>NODE_32_length_248_cov_0.979275</Iteration_query-def>
872 <Iteration_query-len>248</Iteration_query-len>
873 <Iteration_hits>
874 </Iteration_hits>
875 <Iteration_stat>
876 <Statistics>
877 <Statistics_db-num>16305</Statistics_db-num>
878 <Statistics_db-len>2821655</Statistics_db-len>
879 <Statistics_hsp-len>48</Statistics_hsp-len>
880 <Statistics_eff-space>69326510</Statistics_eff-space>
881 <Statistics_kappa>0.041</Statistics_kappa>
882 <Statistics_lambda>0.267</Statistics_lambda>
883 <Statistics_entropy>0.14</Statistics_entropy>
884 </Statistics>
885 </Iteration_stat>
886 <Iteration_message>No hits found</Iteration_message>
887 </Iteration>
888 <Iteration>
889 <Iteration_iter-num>33</Iteration_iter-num>
890 <Iteration_query-ID>Query_33</Iteration_query-ID>
891 <Iteration_query-def>NODE_33_length_245_cov_1.000000</Iteration_query-def>
892 <Iteration_query-len>245</Iteration_query-len>
893 <Iteration_hits>
894 </Iteration_hits>
895 <Iteration_stat>
896 <Statistics>
897 <Statistics_db-num>16305</Statistics_db-num>
898 <Statistics_db-len>2821655</Statistics_db-len>
899 <Statistics_hsp-len>47</Statistics_hsp-len>
900 <Statistics_eff-space>69880880</Statistics_eff-space>
901 <Statistics_kappa>0.041</Statistics_kappa>
902 <Statistics_lambda>0.267</Statistics_lambda>
903 <Statistics_entropy>0.14</Statistics_entropy>
904 </Statistics>
905 </Iteration_stat>
906 <Iteration_message>No hits found</Iteration_message>
907 </Iteration>
908 <Iteration>
909 <Iteration_iter-num>34</Iteration_iter-num>
910 <Iteration_query-ID>Query_34</Iteration_query-ID>
911 <Iteration_query-def>NODE_34_length_245_cov_1.000000</Iteration_query-def>
912 <Iteration_query-len>245</Iteration_query-len>
913 <Iteration_hits>
914 <Hit>
915 <Hit_num>1</Hit_num>
916 <Hit_id>gnl|CDD|250270</Hit_id>
917 <Hit_def>pfam00978, RdRP_2, RNA dependent RNA polymerase. This family may represent an RNA dependent RNA polymerase. The family also contains the following proteins: 2A protein from bromoviruses putative RNA dependent RNA polymerase from tobamoviruses Non structural polyprotein from togaviruses.</Hit_def>
918 <Hit_accession>250270</Hit_accession>
919 <Hit_len>441</Hit_len>
920 <Hit_hsps>
921 <Hsp>
922 <Hsp_num>1</Hsp_num>
923 <Hsp_bit-score>45.7137</Hsp_bit-score>
924 <Hsp_score>109</Hsp_score>
925 <Hsp_evalue>6.42106e-08</Hsp_evalue>
926 <Hsp_query-from>44</Hsp_query-from>
927 <Hsp_query-to>211</Hsp_query-to>
928 <Hsp_hit-from>164</Hsp_hit-from>
929 <Hsp_hit-to>219</Hsp_hit-to>
930 <Hsp_query-frame>2</Hsp_query-frame>
931 <Hsp_hit-frame>0</Hsp_hit-frame>
932 <Hsp_identity>21</Hsp_identity>
933 <Hsp_positive>31</Hsp_positive>
934 <Hsp_gaps>0</Hsp_gaps>
935 <Hsp_align-len>56</Hsp_align-len>
936 <Hsp_qseq>KGMCAIFSPIFKELKNRLKSVLDIKYMYADGLRPDQLSERMSQIGAGKYFIENDME</Hsp_qseq>
937 <Hsp_hseq>KLVTAYFSPIFRELFERLLYVLKPKVVFPTGMTSSLIAERFEFLDASEDFLEIDFS</Hsp_hseq>
938 <Hsp_midline>K + A FSPIF+EL RL VL K ++ G+ ++ER + A + F+E D </Hsp_midline>
939 </Hsp>
940 </Hit_hsps>
941 </Hit>
942 </Iteration_hits>
943 <Iteration_stat>
944 <Statistics>
945 <Statistics_db-num>16305</Statistics_db-num>
946 <Statistics_db-len>2821655</Statistics_db-len>
947 <Statistics_hsp-len>47</Statistics_hsp-len>
948 <Statistics_eff-space>69880880</Statistics_eff-space>
949 <Statistics_kappa>0.041</Statistics_kappa>
950 <Statistics_lambda>0.267</Statistics_lambda>
951 <Statistics_entropy>0.14</Statistics_entropy>
952 </Statistics>
953 </Iteration_stat>
954 </Iteration>
955 <Iteration>
956 <Iteration_iter-num>35</Iteration_iter-num>
957 <Iteration_query-ID>Query_35</Iteration_query-ID>
958 <Iteration_query-def>NODE_35_length_242_cov_0.818182</Iteration_query-def>
959 <Iteration_query-len>242</Iteration_query-len>
960 <Iteration_hits>
961 </Iteration_hits>
962 <Iteration_stat>
963 <Statistics>
964 <Statistics_db-num>16305</Statistics_db-num>
965 <Statistics_db-len>2821655</Statistics_db-len>
966 <Statistics_hsp-len>46</Statistics_hsp-len>
967 <Statistics_eff-space>70435250</Statistics_eff-space>
968 <Statistics_kappa>0.08832702</Statistics_kappa>
969 <Statistics_lambda>0.267</Statistics_lambda>
970 <Statistics_entropy>0.14</Statistics_entropy>
971 </Statistics>
972 </Iteration_stat>
973 <Iteration_message>No hits found</Iteration_message>
974 </Iteration>
975 <Iteration>
976 <Iteration_iter-num>36</Iteration_iter-num>
977 <Iteration_query-ID>Query_36</Iteration_query-ID>
978 <Iteration_query-def>NODE_36_length_240_cov_1.259459</Iteration_query-def>
979 <Iteration_query-len>240</Iteration_query-len>
980 <Iteration_hits>
981 </Iteration_hits>
982 <Iteration_stat>
983 <Statistics>
984 <Statistics_db-num>16305</Statistics_db-num>
985 <Statistics_db-len>2821655</Statistics_db-len>
986 <Statistics_hsp-len>46</Statistics_hsp-len>
987 <Statistics_eff-space>70435250</Statistics_eff-space>
988 <Statistics_kappa>0.041</Statistics_kappa>
989 <Statistics_lambda>0.267</Statistics_lambda>
990 <Statistics_entropy>0.14</Statistics_entropy>
991 </Statistics>
992 </Iteration_stat>
993 <Iteration_message>No hits found</Iteration_message>
994 </Iteration>
995 <Iteration>
996 <Iteration_iter-num>37</Iteration_iter-num>
997 <Iteration_query-ID>Query_37</Iteration_query-ID>
998 <Iteration_query-def>NODE_37_length_239_cov_1.032609</Iteration_query-def>
999 <Iteration_query-len>239</Iteration_query-len>
1000 <Iteration_hits>
1001 </Iteration_hits>
1002 <Iteration_stat>
1003 <Statistics>
1004 <Statistics_db-num>16305</Statistics_db-num>
1005 <Statistics_db-len>2821655</Statistics_db-len>
1006 <Statistics_hsp-len>45</Statistics_hsp-len>
1007 <Statistics_eff-space>70989620</Statistics_eff-space>
1008 <Statistics_kappa>0.041</Statistics_kappa>
1009 <Statistics_lambda>0.267</Statistics_lambda>
1010 <Statistics_entropy>0.14</Statistics_entropy>
1011 </Statistics>
1012 </Iteration_stat>
1013 <Iteration_message>No hits found</Iteration_message>
1014 </Iteration>
1015 <Iteration>
1016 <Iteration_iter-num>38</Iteration_iter-num>
1017 <Iteration_query-ID>Query_38</Iteration_query-ID>
1018 <Iteration_query-def>NODE_38_length_239_cov_1.032609</Iteration_query-def>
1019 <Iteration_query-len>239</Iteration_query-len>
1020 <Iteration_hits>
1021 </Iteration_hits>
1022 <Iteration_stat>
1023 <Statistics>
1024 <Statistics_db-num>16305</Statistics_db-num>
1025 <Statistics_db-len>2821655</Statistics_db-len>
1026 <Statistics_hsp-len>45</Statistics_hsp-len>
1027 <Statistics_eff-space>70989620</Statistics_eff-space>
1028 <Statistics_kappa>0.041</Statistics_kappa>
1029 <Statistics_lambda>0.267</Statistics_lambda>
1030 <Statistics_entropy>0.14</Statistics_entropy>
1031 </Statistics>
1032 </Iteration_stat>
1033 <Iteration_message>No hits found</Iteration_message>
1034 </Iteration>
1035 <Iteration>
1036 <Iteration_iter-num>39</Iteration_iter-num>
1037 <Iteration_query-ID>Query_39</Iteration_query-ID>
1038 <Iteration_query-def>NODE_39_length_238_cov_1.038251</Iteration_query-def>
1039 <Iteration_query-len>238</Iteration_query-len>
1040 <Iteration_hits>
1041 </Iteration_hits>
1042 <Iteration_stat>
1043 <Statistics>
1044 <Statistics_db-num>16305</Statistics_db-num>
1045 <Statistics_db-len>2821655</Statistics_db-len>
1046 <Statistics_hsp-len>45</Statistics_hsp-len>
1047 <Statistics_eff-space>70989620</Statistics_eff-space>
1048 <Statistics_kappa>0.041</Statistics_kappa>
1049 <Statistics_lambda>0.267</Statistics_lambda>
1050 <Statistics_entropy>0.14</Statistics_entropy>
1051 </Statistics>
1052 </Iteration_stat>
1053 <Iteration_message>No hits found</Iteration_message>
1054 </Iteration>
1055 <Iteration>
1056 <Iteration_iter-num>40</Iteration_iter-num>
1057 <Iteration_query-ID>Query_40</Iteration_query-ID>
1058 <Iteration_query-def>NODE_40_length_238_cov_0.879781</Iteration_query-def>
1059 <Iteration_query-len>238</Iteration_query-len>
1060 <Iteration_hits>
1061 </Iteration_hits>
1062 <Iteration_stat>
1063 <Statistics>
1064 <Statistics_db-num>16305</Statistics_db-num>
1065 <Statistics_db-len>2821655</Statistics_db-len>
1066 <Statistics_hsp-len>45</Statistics_hsp-len>
1067 <Statistics_eff-space>70989620</Statistics_eff-space>
1068 <Statistics_kappa>0.041</Statistics_kappa>
1069 <Statistics_lambda>0.267</Statistics_lambda>
1070 <Statistics_entropy>0.14</Statistics_entropy>
1071 </Statistics>
1072 </Iteration_stat>
1073 <Iteration_message>No hits found</Iteration_message>
1074 </Iteration>
1075 <Iteration>
1076 <Iteration_iter-num>41</Iteration_iter-num>
1077 <Iteration_query-ID>Query_41</Iteration_query-ID>
1078 <Iteration_query-def>NODE_41_length_236_cov_1.049724</Iteration_query-def>
1079 <Iteration_query-len>236</Iteration_query-len>
1080 <Iteration_hits>
1081 </Iteration_hits>
1082 <Iteration_stat>
1083 <Statistics>
1084 <Statistics_db-num>16305</Statistics_db-num>
1085 <Statistics_db-len>2821655</Statistics_db-len>
1086 <Statistics_hsp-len>45</Statistics_hsp-len>
1087 <Statistics_eff-space>68901690</Statistics_eff-space>
1088 <Statistics_kappa>0.041</Statistics_kappa>
1089 <Statistics_lambda>0.267</Statistics_lambda>
1090 <Statistics_entropy>0.14</Statistics_entropy>
1091 </Statistics>
1092 </Iteration_stat>
1093 <Iteration_message>No hits found</Iteration_message>
1094 </Iteration>
1095 <Iteration>
1096 <Iteration_iter-num>42</Iteration_iter-num>
1097 <Iteration_query-ID>Query_42</Iteration_query-ID>
1098 <Iteration_query-def>NODE_42_length_235_cov_1.855556</Iteration_query-def>
1099 <Iteration_query-len>235</Iteration_query-len>
1100 <Iteration_hits>
1101 </Iteration_hits>
1102 <Iteration_stat>
1103 <Statistics>
1104 <Statistics_db-num>16305</Statistics_db-num>
1105 <Statistics_db-len>2821655</Statistics_db-len>
1106 <Statistics_hsp-len>45</Statistics_hsp-len>
1107 <Statistics_eff-space>68901690</Statistics_eff-space>
1108 <Statistics_kappa>0.041</Statistics_kappa>
1109 <Statistics_lambda>0.267</Statistics_lambda>
1110 <Statistics_entropy>0.14</Statistics_entropy>
1111 </Statistics>
1112 </Iteration_stat>
1113 <Iteration_message>No hits found</Iteration_message>
1114 </Iteration>
1115 <Iteration>
1116 <Iteration_iter-num>43</Iteration_iter-num>
1117 <Iteration_query-ID>Query_43</Iteration_query-ID>
1118 <Iteration_query-def>NODE_43_length_234_cov_1.061453</Iteration_query-def>
1119 <Iteration_query-len>234</Iteration_query-len>
1120 <Iteration_hits>
1121 </Iteration_hits>
1122 <Iteration_stat>
1123 <Statistics>
1124 <Statistics_db-num>16305</Statistics_db-num>
1125 <Statistics_db-len>2821655</Statistics_db-len>
1126 <Statistics_hsp-len>45</Statistics_hsp-len>
1127 <Statistics_eff-space>68901690</Statistics_eff-space>
1128 <Statistics_kappa>0.041</Statistics_kappa>
1129 <Statistics_lambda>0.267</Statistics_lambda>
1130 <Statistics_entropy>0.14</Statistics_entropy>
1131 </Statistics>
1132 </Iteration_stat>
1133 <Iteration_message>No hits found</Iteration_message>
1134 </Iteration>
1135 <Iteration>
1136 <Iteration_iter-num>44</Iteration_iter-num>
1137 <Iteration_query-ID>Query_44</Iteration_query-ID>
1138 <Iteration_query-def>NODE_44_length_232_cov_1.073446</Iteration_query-def>
1139 <Iteration_query-len>232</Iteration_query-len>
1140 <Iteration_hits>
1141 </Iteration_hits>
1142 <Iteration_stat>
1143 <Statistics>
1144 <Statistics_db-num>16305</Statistics_db-num>
1145 <Statistics_db-len>2821655</Statistics_db-len>
1146 <Statistics_hsp-len>44</Statistics_hsp-len>
1147 <Statistics_eff-space>69439755</Statistics_eff-space>
1148 <Statistics_kappa>0.041</Statistics_kappa>
1149 <Statistics_lambda>0.267</Statistics_lambda>
1150 <Statistics_entropy>0.14</Statistics_entropy>
1151 </Statistics>
1152 </Iteration_stat>
1153 <Iteration_message>No hits found</Iteration_message>
1154 </Iteration>
1155 <Iteration>
1156 <Iteration_iter-num>45</Iteration_iter-num>
1157 <Iteration_query-ID>Query_45</Iteration_query-ID>
1158 <Iteration_query-def>NODE_45_length_232_cov_1.073446</Iteration_query-def>
1159 <Iteration_query-len>232</Iteration_query-len>
1160 <Iteration_hits>
1161 </Iteration_hits>
1162 <Iteration_stat>
1163 <Statistics>
1164 <Statistics_db-num>16305</Statistics_db-num>
1165 <Statistics_db-len>2821655</Statistics_db-len>
1166 <Statistics_hsp-len>44</Statistics_hsp-len>
1167 <Statistics_eff-space>69439755</Statistics_eff-space>
1168 <Statistics_kappa>0.041</Statistics_kappa>
1169 <Statistics_lambda>0.267</Statistics_lambda>
1170 <Statistics_entropy>0.14</Statistics_entropy>
1171 </Statistics>
1172 </Iteration_stat>
1173 <Iteration_message>No hits found</Iteration_message>
1174 </Iteration>
1175 <Iteration>
1176 <Iteration_iter-num>46</Iteration_iter-num>
1177 <Iteration_query-ID>Query_46</Iteration_query-ID>
1178 <Iteration_query-def>NODE_46_length_229_cov_1.091954</Iteration_query-def>
1179 <Iteration_query-len>229</Iteration_query-len>
1180 <Iteration_hits>
1181 <Hit>
1182 <Hit_num>1</Hit_num>
1183 <Hit_id>gnl|CDD|306604</Hit_id>
1184 <Hit_def>pfam00124, Photo_RC, Photosynthetic reaction centre protein. </Hit_def>
1185 <Hit_accession>306604</Hit_accession>
1186 <Hit_len>258</Hit_len>
1187 <Hit_hsps>
1188 <Hsp>
1189 <Hsp_num>1</Hsp_num>
1190 <Hsp_bit-score>86.1436</Hsp_bit-score>
1191 <Hsp_score>214</Hsp_score>
1192 <Hsp_evalue>4.26406e-23</Hsp_evalue>
1193 <Hsp_query-from>24</Hsp_query-from>
1194 <Hsp_query-to>194</Hsp_query-to>
1195 <Hsp_hit-from>87</Hsp_hit-from>
1196 <Hsp_hit-to>143</Hsp_hit-to>
1197 <Hsp_query-frame>-3</Hsp_query-frame>
1198 <Hsp_hit-frame>0</Hsp_hit-frame>
1199 <Hsp_identity>25</Hsp_identity>
1200 <Hsp_positive>36</Hsp_positive>
1201 <Hsp_gaps>0</Hsp_gaps>
1202 <Hsp_align-len>57</Hsp_align-len>
1203 <Hsp_qseq>ELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQA</Hsp_qseq>
1204 <Hsp_hseq>EIARKLGMGPHIAWAFSAAIAAYLSLGLIRPILMGSWSEGFPLGIFPHLDWTSNFSY</Hsp_hseq>
1205 <Hsp_midline>E++ +LGM P IA A+SA +AA ++ LI PI GS+S+G PLGI ++ F </Hsp_midline>
1206 </Hsp>
1207 </Hit_hsps>
1208 </Hit>
1209 </Iteration_hits>
1210 <Iteration_stat>
1211 <Statistics>
1212 <Statistics_db-num>16305</Statistics_db-num>
1213 <Statistics_db-len>2821655</Statistics_db-len>
1214 <Statistics_hsp-len>43</Statistics_hsp-len>
1215 <Statistics_eff-space>69977820</Statistics_eff-space>
1216 <Statistics_kappa>0.041</Statistics_kappa>
1217 <Statistics_lambda>0.267</Statistics_lambda>
1218 <Statistics_entropy>0.14</Statistics_entropy>
1219 </Statistics>
1220 </Iteration_stat>
1221 </Iteration>
1222 <Iteration>
1223 <Iteration_iter-num>47</Iteration_iter-num>
1224 <Iteration_query-ID>Query_47</Iteration_query-ID>
1225 <Iteration_query-def>NODE_47_length_229_cov_0.816092</Iteration_query-def>
1226 <Iteration_query-len>229</Iteration_query-len>
1227 <Iteration_hits>
1228 <Hit>
1229 <Hit_num>1</Hit_num>
1230 <Hit_id>gnl|CDD|306687</Hit_id>
1231 <Hit_def>pfam00223, PsaA_PsaB, Photosystem I psaA/psaB protein. </Hit_def>
1232 <Hit_accession>306687</Hit_accession>
1233 <Hit_len>717</Hit_len>
1234 <Hit_hsps>
1235 <Hsp>
1236 <Hsp_num>1</Hsp_num>
1237 <Hsp_bit-score>61.3066</Hsp_bit-score>
1238 <Hsp_score>149</Hsp_score>
1239 <Hsp_evalue>1.79906e-13</Hsp_evalue>
1240 <Hsp_query-from>124</Hsp_query-from>
1241 <Hsp_query-to>222</Hsp_query-to>
1242 <Hsp_hit-from>1</Hsp_hit-from>
1243 <Hsp_hit-to>33</Hsp_hit-to>
1244 <Hsp_query-frame>1</Hsp_query-frame>
1245 <Hsp_hit-frame>0</Hsp_hit-frame>
1246 <Hsp_identity>22</Hsp_identity>
1247 <Hsp_positive>24</Hsp_positive>
1248 <Hsp_gaps>0</Hsp_gaps>
1249 <Hsp_align-len>33</Hsp_align-len>
1250 <Hsp_qseq>FSRTLAKGPDTTTWIWNLHADAHDLNSQTHPTQ</Hsp_qseq>
1251 <Hsp_hseq>FSRDLAQGPKTTTWIWNLHATAHDFESHDGDTE</Hsp_hseq>
1252 <Hsp_midline>FSR LA+GP TTTWIWNLHA AHD S T+</Hsp_midline>
1253 </Hsp>
1254 </Hit_hsps>
1255 </Hit>
1256 </Iteration_hits>
1257 <Iteration_stat>
1258 <Statistics>
1259 <Statistics_db-num>16305</Statistics_db-num>
1260 <Statistics_db-len>2821655</Statistics_db-len>
1261 <Statistics_hsp-len>43</Statistics_hsp-len>
1262 <Statistics_eff-space>69977820</Statistics_eff-space>
1263 <Statistics_kappa>0.041</Statistics_kappa>
1264 <Statistics_lambda>0.267</Statistics_lambda>
1265 <Statistics_entropy>0.14</Statistics_entropy>
1266 </Statistics>
1267 </Iteration_stat>
1268 </Iteration>
1269 <Iteration>
1270 <Iteration_iter-num>48</Iteration_iter-num>
1271 <Iteration_query-ID>Query_48</Iteration_query-ID>
1272 <Iteration_query-def>NODE_48_length_227_cov_1.273256</Iteration_query-def>
1273 <Iteration_query-len>227</Iteration_query-len>
1274 <Iteration_hits>
1275 </Iteration_hits>
1276 <Iteration_stat>
1277 <Statistics>
1278 <Statistics_db-num>16305</Statistics_db-num>
1279 <Statistics_db-len>2821655</Statistics_db-len>
1280 <Statistics_hsp-len>42</Statistics_hsp-len>
1281 <Statistics_eff-space>70515885</Statistics_eff-space>
1282 <Statistics_kappa>0.041</Statistics_kappa>
1283 <Statistics_lambda>0.267</Statistics_lambda>
1284 <Statistics_entropy>0.14</Statistics_entropy>
1285 </Statistics>
1286 </Iteration_stat>
1287 <Iteration_message>No hits found</Iteration_message>
1288 </Iteration>
1289 <Iteration>
1290 <Iteration_iter-num>49</Iteration_iter-num>
1291 <Iteration_query-ID>Query_49</Iteration_query-ID>
1292 <Iteration_query-def>NODE_49_length_227_cov_1.017442</Iteration_query-def>
1293 <Iteration_query-len>227</Iteration_query-len>
1294 <Iteration_hits>
1295 </Iteration_hits>
1296 <Iteration_stat>
1297 <Statistics>
1298 <Statistics_db-num>16305</Statistics_db-num>
1299 <Statistics_db-len>2821655</Statistics_db-len>
1300 <Statistics_hsp-len>42</Statistics_hsp-len>
1301 <Statistics_eff-space>70515885</Statistics_eff-space>
1302 <Statistics_kappa>0.041</Statistics_kappa>
1303 <Statistics_lambda>0.267</Statistics_lambda>
1304 <Statistics_entropy>0.14</Statistics_entropy>
1305 </Statistics>
1306 </Iteration_stat>
1307 <Iteration_message>No hits found</Iteration_message>
1308 </Iteration>
1309 <Iteration>
1310 <Iteration_iter-num>50</Iteration_iter-num>
1311 <Iteration_query-ID>Query_50</Iteration_query-ID>
1312 <Iteration_query-def>NODE_50_length_226_cov_2.269006</Iteration_query-def>
1313 <Iteration_query-len>226</Iteration_query-len>
1314 <Iteration_hits>
1315 <Hit>
1316 <Hit_num>1</Hit_num>
1317 <Hit_id>gnl|CDD|306845</Hit_id>
1318 <Hit_def>pfam00421, PSII, Photosystem II protein. </Hit_def>
1319 <Hit_accession>306845</Hit_accession>
1320 <Hit_len>500</Hit_len>
1321 <Hit_hsps>
1322 <Hsp>
1323 <Hsp_num>1</Hsp_num>
1324 <Hsp_bit-score>89.1064</Hsp_bit-score>
1325 <Hsp_score>221</Hsp_score>
1326 <Hsp_evalue>2.77182e-23</Hsp_evalue>
1327 <Hsp_query-from>31</Hsp_query-from>
1328 <Hsp_query-to>213</Hsp_query-to>
1329 <Hsp_hit-from>160</Hsp_hit-from>
1330 <Hsp_hit-to>227</Hsp_hit-to>
1331 <Hsp_query-frame>1</Hsp_query-frame>
1332 <Hsp_hit-frame>0</Hsp_hit-frame>
1333 <Hsp_identity>41</Hsp_identity>
1334 <Hsp_positive>45</Hsp_positive>
1335 <Hsp_gaps>7</Hsp_gaps>
1336 <Hsp_align-len>68</Hsp_align-len>
1337 <Hsp_qseq>GPGIWVSDP-------YGLTGTVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRSPQ</Hsp_qseq>
1338 <Hsp_hseq>GLGTWVSDPTLDPGVIYGYTGHVQPVAPVWGAEGFSPFGPGGIVGHHIAAGILGIIGGIFHITTRPPG</Hsp_hseq>
1339 <Hsp_midline>G G WVSDP YG TG VQPV P WG EGF PF PGGI HHIAAG LGI+ G+FH++ R P </Hsp_midline>
1340 </Hsp>
1341 </Hit_hsps>
1342 </Hit>
1343 </Iteration_hits>
1344 <Iteration_stat>
1345 <Statistics>
1346 <Statistics_db-num>16305</Statistics_db-num>
1347 <Statistics_db-len>2821655</Statistics_db-len>
1348 <Statistics_hsp-len>42</Statistics_hsp-len>
1349 <Statistics_eff-space>70515885</Statistics_eff-space>
1350 <Statistics_kappa>0.041</Statistics_kappa>
1351 <Statistics_lambda>0.267</Statistics_lambda>
1352 <Statistics_entropy>0.14</Statistics_entropy>
1353 </Statistics>
1354 </Iteration_stat>
1355 </Iteration>
1356 <Iteration>
1357 <Iteration_iter-num>51</Iteration_iter-num>
1358 <Iteration_query-ID>Query_51</Iteration_query-ID>
1359 <Iteration_query-def>NODE_51_length_225_cov_1.117647</Iteration_query-def>
1360 <Iteration_query-len>225</Iteration_query-len>
1361 <Iteration_hits>
1362 </Iteration_hits>
1363 <Iteration_stat>
1364 <Statistics>
1365 <Statistics_db-num>16305</Statistics_db-num>
1366 <Statistics_db-len>2821655</Statistics_db-len>
1367 <Statistics_hsp-len>42</Statistics_hsp-len>
1368 <Statistics_eff-space>70515885</Statistics_eff-space>
1369 <Statistics_kappa>0.041</Statistics_kappa>
1370 <Statistics_lambda>0.267</Statistics_lambda>
1371 <Statistics_entropy>0.14</Statistics_entropy>
1372 </Statistics>
1373 </Iteration_stat>
1374 <Iteration_message>No hits found</Iteration_message>
1375 </Iteration>
1376 <Iteration>
1377 <Iteration_iter-num>52</Iteration_iter-num>
1378 <Iteration_query-ID>Query_52</Iteration_query-ID>
1379 <Iteration_query-def>NODE_52_length_225_cov_0.917647</Iteration_query-def>
1380 <Iteration_query-len>225</Iteration_query-len>
1381 <Iteration_hits>
1382 </Iteration_hits>
1383 <Iteration_stat>
1384 <Statistics>
1385 <Statistics_db-num>16305</Statistics_db-num>
1386 <Statistics_db-len>2821655</Statistics_db-len>
1387 <Statistics_hsp-len>42</Statistics_hsp-len>
1388 <Statistics_eff-space>70515885</Statistics_eff-space>
1389 <Statistics_kappa>0.041</Statistics_kappa>
1390 <Statistics_lambda>0.267</Statistics_lambda>
1391 <Statistics_entropy>0.14</Statistics_entropy>
1392 </Statistics>
1393 </Iteration_stat>
1394 <Iteration_message>No hits found</Iteration_message>
1395 </Iteration>
1396 <Iteration>
1397 <Iteration_iter-num>53</Iteration_iter-num>
1398 <Iteration_query-ID>Query_53</Iteration_query-ID>
1399 <Iteration_query-def>NODE_53_length_223_cov_3.303571</Iteration_query-def>
1400 <Iteration_query-len>223</Iteration_query-len>
1401 <Iteration_hits>
1402 </Iteration_hits>
1403 <Iteration_stat>
1404 <Statistics>
1405 <Statistics_db-num>16305</Statistics_db-num>
1406 <Statistics_db-len>2821655</Statistics_db-len>
1407 <Statistics_hsp-len>41</Statistics_hsp-len>
1408 <Statistics_eff-space>71053950</Statistics_eff-space>
1409 <Statistics_kappa>0.041</Statistics_kappa>
1410 <Statistics_lambda>0.267</Statistics_lambda>
1411 <Statistics_entropy>0.14</Statistics_entropy>
1412 </Statistics>
1413 </Iteration_stat>
1414 <Iteration_message>No hits found</Iteration_message>
1415 </Iteration>
1416 <Iteration>
1417 <Iteration_iter-num>54</Iteration_iter-num>
1418 <Iteration_query-ID>Query_54</Iteration_query-ID>
1419 <Iteration_query-def>NODE_54_length_223_cov_1.803571</Iteration_query-def>
1420 <Iteration_query-len>223</Iteration_query-len>
1421 <Iteration_hits>
1422 </Iteration_hits>
1423 <Iteration_stat>
1424 <Statistics>
1425 <Statistics_db-num>16305</Statistics_db-num>
1426 <Statistics_db-len>2821655</Statistics_db-len>
1427 <Statistics_hsp-len>41</Statistics_hsp-len>
1428 <Statistics_eff-space>71053950</Statistics_eff-space>
1429 <Statistics_kappa>0.041</Statistics_kappa>
1430 <Statistics_lambda>0.267</Statistics_lambda>
1431 <Statistics_entropy>0.14</Statistics_entropy>
1432 </Statistics>
1433 </Iteration_stat>
1434 <Iteration_message>No hits found</Iteration_message>
1435 </Iteration>
1436 <Iteration>
1437 <Iteration_iter-num>55</Iteration_iter-num>
1438 <Iteration_query-ID>Query_55</Iteration_query-ID>
1439 <Iteration_query-def>NODE_55_length_216_cov_1.596273</Iteration_query-def>
1440 <Iteration_query-len>216</Iteration_query-len>
1441 <Iteration_hits>
1442 </Iteration_hits>
1443 <Iteration_stat>
1444 <Statistics>
1445 <Statistics_db-num>16305</Statistics_db-num>
1446 <Statistics_db-len>2821655</Statistics_db-len>
1447 <Statistics_hsp-len>40</Statistics_hsp-len>
1448 <Statistics_eff-space>69422560</Statistics_eff-space>
1449 <Statistics_kappa>0.041</Statistics_kappa>
1450 <Statistics_lambda>0.267</Statistics_lambda>
1451 <Statistics_entropy>0.14</Statistics_entropy>
1452 </Statistics>
1453 </Iteration_stat>
1454 <Iteration_message>No hits found</Iteration_message>
1455 </Iteration>
1456 <Iteration>
1457 <Iteration_iter-num>56</Iteration_iter-num>
1458 <Iteration_query-ID>Query_56</Iteration_query-ID>
1459 <Iteration_query-def>NODE_56_length_216_cov_1.180124</Iteration_query-def>
1460 <Iteration_query-len>216</Iteration_query-len>
1461 <Iteration_hits>
1462 <Hit>
1463 <Hit_num>1</Hit_num>
1464 <Hit_id>gnl|CDD|306795</Hit_id>
1465 <Hit_def>pfam00361, Proton_antipo_M, Proton-conducting membrane transporter. This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.</Hit_def>
1466 <Hit_accession>306795</Hit_accession>
1467 <Hit_len>291</Hit_len>
1468 <Hit_hsps>
1469 <Hsp>
1470 <Hsp_num>1</Hsp_num>
1471 <Hsp_bit-score>42.6815</Hsp_bit-score>
1472 <Hsp_score>101</Hsp_score>
1473 <Hsp_evalue>5.23486e-07</Hsp_evalue>
1474 <Hsp_query-from>18</Hsp_query-from>
1475 <Hsp_query-to>188</Hsp_query-to>
1476 <Hsp_hit-from>52</Hsp_hit-from>
1477 <Hsp_hit-to>110</Hsp_hit-to>
1478 <Hsp_query-frame>3</Hsp_query-frame>
1479 <Hsp_hit-frame>0</Hsp_hit-frame>
1480 <Hsp_identity>16</Hsp_identity>
1481 <Hsp_positive>28</Hsp_positive>
1482 <Hsp_gaps>4</Hsp_gaps>
1483 <Hsp_align-len>60</Hsp_align-len>
1484 <Hsp_qseq>GLCGLFGSTEPTLNFEILTNQSYPVALEI---IFYIGFFLAFAVKLPIIPLHTWLPDTHE</Hsp_qseq>
1485 <Hsp_hseq>GISLMYNYTG-TLSFTELSKALFNGLNSWGLLLLFLLILVGFLFKSAQVPFHTWLPDAYE</Hsp_hseq>
1486 <Hsp_midline>G+ ++ T TL+F L+ + + ++ + F K +P HTWLPD +E</Hsp_midline>
1487 </Hsp>
1488 </Hit_hsps>
1489 </Hit>
1490 </Iteration_hits>
1491 <Iteration_stat>
1492 <Statistics>
1493 <Statistics_db-num>16305</Statistics_db-num>
1494 <Statistics_db-len>2821655</Statistics_db-len>
1495 <Statistics_hsp-len>40</Statistics_hsp-len>
1496 <Statistics_eff-space>69422560</Statistics_eff-space>
1497 <Statistics_kappa>0.041</Statistics_kappa>
1498 <Statistics_lambda>0.267</Statistics_lambda>
1499 <Statistics_entropy>0.14</Statistics_entropy>
1500 </Statistics>
1501 </Iteration_stat>
1502 </Iteration>
1503 <Iteration>
1504 <Iteration_iter-num>57</Iteration_iter-num>
1505 <Iteration_query-ID>Query_57</Iteration_query-ID>
1506 <Iteration_query-def>NODE_57_length_216_cov_0.869565</Iteration_query-def>
1507 <Iteration_query-len>216</Iteration_query-len>
1508 <Iteration_hits>
1509 </Iteration_hits>
1510 <Iteration_stat>
1511 <Statistics>
1512 <Statistics_db-num>16305</Statistics_db-num>
1513 <Statistics_db-len>2821655</Statistics_db-len>
1514 <Statistics_hsp-len>40</Statistics_hsp-len>
1515 <Statistics_eff-space>69422560</Statistics_eff-space>
1516 <Statistics_kappa>0.041</Statistics_kappa>
1517 <Statistics_lambda>0.267</Statistics_lambda>
1518 <Statistics_entropy>0.14</Statistics_entropy>
1519 </Statistics>
1520 </Iteration_stat>
1521 <Iteration_message>No hits found</Iteration_message>
1522 </Iteration>
1523 <Iteration>
1524 <Iteration_iter-num>58</Iteration_iter-num>
1525 <Iteration_query-ID>Query_58</Iteration_query-ID>
1526 <Iteration_query-def>NODE_58_length_215_cov_1.668750</Iteration_query-def>
1527 <Iteration_query-len>215</Iteration_query-len>
1528 <Iteration_hits>
1529 </Iteration_hits>
1530 <Iteration_stat>
1531 <Statistics>
1532 <Statistics_db-num>16305</Statistics_db-num>
1533 <Statistics_db-len>2821655</Statistics_db-len>
1534 <Statistics_hsp-len>39</Statistics_hsp-len>
1535 <Statistics_eff-space>69944320</Statistics_eff-space>
1536 <Statistics_kappa>0.041</Statistics_kappa>
1537 <Statistics_lambda>0.267</Statistics_lambda>
1538 <Statistics_entropy>0.14</Statistics_entropy>
1539 </Statistics>
1540 </Iteration_stat>
1541 <Iteration_message>No hits found</Iteration_message>
1542 </Iteration>
1543 <Iteration>
1544 <Iteration_iter-num>59</Iteration_iter-num>
1545 <Iteration_query-ID>Query_59</Iteration_query-ID>
1546 <Iteration_query-def>NODE_59_length_215_cov_1.187500</Iteration_query-def>
1547 <Iteration_query-len>215</Iteration_query-len>
1548 <Iteration_hits>
1549 </Iteration_hits>
1550 <Iteration_stat>
1551 <Statistics>
1552 <Statistics_db-num>16305</Statistics_db-num>
1553 <Statistics_db-len>2821655</Statistics_db-len>
1554 <Statistics_hsp-len>39</Statistics_hsp-len>
1555 <Statistics_eff-space>69944320</Statistics_eff-space>
1556 <Statistics_kappa>0.041</Statistics_kappa>
1557 <Statistics_lambda>0.267</Statistics_lambda>
1558 <Statistics_entropy>0.14</Statistics_entropy>
1559 </Statistics>
1560 </Iteration_stat>
1561 <Iteration_message>No hits found</Iteration_message>
1562 </Iteration>
1563 <Iteration>
1564 <Iteration_iter-num>60</Iteration_iter-num>
1565 <Iteration_query-ID>Query_60</Iteration_query-ID>
1566 <Iteration_query-def>NODE_60_length_215_cov_0.843750</Iteration_query-def>
1567 <Iteration_query-len>215</Iteration_query-len>
1568 <Iteration_hits>
1569 </Iteration_hits>
1570 <Iteration_stat>
1571 <Statistics>
1572 <Statistics_db-num>16305</Statistics_db-num>
1573 <Statistics_db-len>2821655</Statistics_db-len>
1574 <Statistics_hsp-len>39</Statistics_hsp-len>
1575 <Statistics_eff-space>69944320</Statistics_eff-space>
1576 <Statistics_kappa>0.041</Statistics_kappa>
1577 <Statistics_lambda>0.267</Statistics_lambda>
1578 <Statistics_entropy>0.14</Statistics_entropy>
1579 </Statistics>
1580 </Iteration_stat>
1581 <Iteration_message>No hits found</Iteration_message>
1582 </Iteration>
1583 <Iteration>
1584 <Iteration_iter-num>61</Iteration_iter-num>
1585 <Iteration_query-ID>Query_61</Iteration_query-ID>
1586 <Iteration_query-def>NODE_61_length_214_cov_1.232704</Iteration_query-def>
1587 <Iteration_query-len>214</Iteration_query-len>
1588 <Iteration_hits>
1589 </Iteration_hits>
1590 <Iteration_stat>
1591 <Statistics>
1592 <Statistics_db-num>16305</Statistics_db-num>
1593 <Statistics_db-len>2821655</Statistics_db-len>
1594 <Statistics_hsp-len>39</Statistics_hsp-len>
1595 <Statistics_eff-space>69944320</Statistics_eff-space>
1596 <Statistics_kappa>0.041</Statistics_kappa>
1597 <Statistics_lambda>0.267</Statistics_lambda>
1598 <Statistics_entropy>0.14</Statistics_entropy>
1599 </Statistics>
1600 </Iteration_stat>
1601 <Iteration_message>No hits found</Iteration_message>
1602 </Iteration>
1603 <Iteration>
1604 <Iteration_iter-num>62</Iteration_iter-num>
1605 <Iteration_query-ID>Query_62</Iteration_query-ID>
1606 <Iteration_query-def>NODE_62_length_213_cov_0.936709</Iteration_query-def>
1607 <Iteration_query-len>213</Iteration_query-len>
1608 <Iteration_hits>
1609 </Iteration_hits>
1610 <Iteration_stat>
1611 <Statistics>
1612 <Statistics_db-num>16305</Statistics_db-num>
1613 <Statistics_db-len>2821655</Statistics_db-len>
1614 <Statistics_hsp-len>39</Statistics_hsp-len>
1615 <Statistics_eff-space>69944320</Statistics_eff-space>
1616 <Statistics_kappa>0.041</Statistics_kappa>
1617 <Statistics_lambda>0.267</Statistics_lambda>
1618 <Statistics_entropy>0.14</Statistics_entropy>
1619 </Statistics>
1620 </Iteration_stat>
1621 <Iteration_message>No hits found</Iteration_message>
1622 </Iteration>
1623 <Iteration>
1624 <Iteration_iter-num>63</Iteration_iter-num>
1625 <Iteration_query-ID>Query_63</Iteration_query-ID>
1626 <Iteration_query-def>NODE_63_length_210_cov_1.225806</Iteration_query-def>
1627 <Iteration_query-len>210</Iteration_query-len>
1628 <Iteration_hits>
1629 </Iteration_hits>
1630 <Iteration_stat>
1631 <Statistics>
1632 <Statistics_db-num>16305</Statistics_db-num>
1633 <Statistics_db-len>2821655</Statistics_db-len>
1634 <Statistics_hsp-len>38</Statistics_hsp-len>
1635 <Statistics_eff-space>70466080</Statistics_eff-space>
1636 <Statistics_kappa>0.041</Statistics_kappa>
1637 <Statistics_lambda>0.267</Statistics_lambda>
1638 <Statistics_entropy>0.14</Statistics_entropy>
1639 </Statistics>
1640 </Iteration_stat>
1641 <Iteration_message>No hits found</Iteration_message>
1642 </Iteration>
1643 <Iteration>
1644 <Iteration_iter-num>64</Iteration_iter-num>
1645 <Iteration_query-ID>Query_64</Iteration_query-ID>
1646 <Iteration_query-def>NODE_64_length_208_cov_1.019608</Iteration_query-def>
1647 <Iteration_query-len>208</Iteration_query-len>
1648 <Iteration_hits>
1649 </Iteration_hits>
1650 <Iteration_stat>
1651 <Statistics>
1652 <Statistics_db-num>16305</Statistics_db-num>
1653 <Statistics_db-len>2821655</Statistics_db-len>
1654 <Statistics_hsp-len>37</Statistics_hsp-len>
1655 <Statistics_eff-space>70987840</Statistics_eff-space>
1656 <Statistics_kappa>0.041</Statistics_kappa>
1657 <Statistics_lambda>0.267</Statistics_lambda>
1658 <Statistics_entropy>0.14</Statistics_entropy>
1659 </Statistics>
1660 </Iteration_stat>
1661 <Iteration_message>No hits found</Iteration_message>
1662 </Iteration>
1663 </BlastOutput_iterations>
1664 </BlastOutput>
1665