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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/vcontact2 commit 7bf2bea944495d304eeb2df687b9e1a046fb8026
author iuc
date Wed, 04 Feb 2026 14:31:41 +0000
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<macros>
    <token name="@TOOL_VERSION@">0.11.3</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">25.0</token>
    <!-- Requirements -->
    <xml name="requirements">
        <requirements>
            <!-- vContact2 is currently unmaintained and does not work with newer versions of python, numpy, pandas or scipy. -->
            <requirement type="package" version="3.9.23">python</requirement>
            <requirement type="package" version="1.23.5">numpy</requirement>
            <requirement type="package" version="1.5.3">pandas</requirement>
            <requirement type="package" version="1.6.3">scipy</requirement>
            <requirement type="package" version="@TOOL_VERSION@">vcontact2</requirement>
            <requirement type="package" version="22.282">mcl</requirement>
            <requirement type="package" version="2.17.0">blast</requirement>
            <requirement type="package" version="2.1.14">diamond</requirement>
            <requirement type="package" version="1.0">clusterone</requirement>
        </requirements>
    </xml>
    <!-- vConTACT databases -->
    <xml name="database_options" token_select_latest="false" token_select_none="false">
        <option value="ProkaryoticViralRefSeq85-ICTV"></option>
        <option value="ProkaryoticViralRefSeq85-Merged"></option>
        <option value="ProkaryoticViralRefSeq88-Merged"></option>
        <option value="ProkaryoticViralRefSeq94-Merged"></option>
        <option value="ProkaryoticViralRefSeq97-Merged"></option>
        <option value="ProkaryoticViralRefSeq99-Merged"></option>
        <option value="ProkaryoticViralRefSeq201-Merged"></option>
        <option value="ProkaryoticViralRefSeq207-Merged"></option>
        <option value="ProkaryoticViralRefSeq211-Merged" selected="@SELECT_LATEST@">ProkaryoticViralRefSeq211-Merged (latest)</option>
        <option value="ArchaeaViralRefSeq85-Merged"></option>
        <option value="ArchaeaViralRefSeq94-Merged"></option>
        <option value="ArchaeaViralRefSeq97-Merged"></option>
        <option value="ArchaeaViralRefSeq99-Merged"></option>
        <option value="ArchaeaViralRefSeq201-Merged"></option>
        <option value="ArchaeaViralRefSeq207-Merged"></option>
        <option value="ArchaeaViralRefSeq211-Merged">ArchaeaViralRefSeq211-Merged (latest)</option>
        <option value="None" selected="@SELECT_NONE@"></option>
    </xml>
    <!-- Misc -->
    <xml name="biotools">
        <xrefs>
            <xref type="bio.tools">vConTACT</xref>
        </xrefs>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1038/s41587-019-0100-8</citation>
        </citations>
    </xml>
</macros>