Mercurial > repos > iuc > vcf2maf

annotate tool-data/vep_versioned_annotation_cache.loc.sample @ 1:e214b9ce682e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit f2287e6aab30c72ef1334688127711fc9624352e
author iuc
date Tue, 11 Oct 2022 20:30:14 +0000
parents 5cc03d77196a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
1 #This file describes vep cache data and its metadata available on the server.
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
2 #The data table has the format (white space characters are TAB characters):
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
3 #
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
4 #<value> <dbkey> <version> <cachetype> <name> <species> <path>
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
5 #
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
6 #So, vep_versioned_annotation_cache.loc tables could look like this:
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
7 #
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
8 #homo_sapiens_vep_105_GRCh38 hg38 105 default Homo sapiens hg38 (V105) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/default
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
9 #homo_sapiens_refseq_vep_105_GRCh38 hg38 105 refseq Homo sapiens hg38 (V105, Refseq) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/refseq
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
10 #homo_sapiens_merged_vep_105_GRCh38 hg38 105 merged Homo sapiens hg38 (V105, Merged) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/merged
5cc03d77196a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
parents:
diff changeset
11 #