Mercurial > repos > iuc > varvamp

comparison test-data/test4.log @ 2:baa1589657e1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/varvamp commit 7a60f4dbf7aecdc394570a48009e3283e4d83745
author iuc
date Thu, 05 Feb 2026 18:00:21 +0000
parents 7a586a157d37
children
comparison
equal deleted inserted replaced
1:209d074eb024 2:baa1589657e1
1 VARVAMP log 1 VARVAMP log
2 2
3 MODE = single 3 MODE = single
4 4
5 5
6 ARG SETTINGS 6 ARG SETTINGS
18 PRIMER_SIZES = (18, 24, 21) 18 PRIMER_SIZES = (18, 24, 21)
19 PRIMER_HAIRPIN = 47 19 PRIMER_HAIRPIN = 47
20 PRIMER_MAX_POLYX = 4 20 PRIMER_MAX_POLYX = 4
21 PRIMER_MAX_DINUC_REPEATS = 4 21 PRIMER_MAX_DINUC_REPEATS = 4
22 PRIMER_GC_END = (1, 3) 22 PRIMER_GC_END = (1, 3)
23 PRIMER_MAX_DIMER_TMP = 47 23 PRIMER_MAX_DIMER_TMP = 35
24 PRIMER_MIN_3_WITHOUT_AMB = 3 24 PRIMER_MIN_3_WITHOUT_AMB = 3
25 PCR_MV_CONC = 100.0 25 PCR_MV_CONC = 100.0
26 PCR_DV_CONC = 2.0 26 PCR_DV_CONC = 2.0
27 PCR_DNTP_CONC = 0.8 27 PCR_DNTP_CONC = 0.8
28 PCR_DNA_CONC = 15.0 28 PCR_DNA_CONC = 15.0
30 PRIMER_GC_PENALTY = 0.2 30 PRIMER_GC_PENALTY = 0.2
31 PRIMER_SIZE_PENALTY = 0.5 31 PRIMER_SIZE_PENALTY = 0.5
32 PRIMER_MAX_BASE_PENALTY = 10 32 PRIMER_MAX_BASE_PENALTY = 10
33 PRIMER_3_PENALTY = (32, 16, 8, 4, 2) 33 PRIMER_3_PENALTY = (32, 16, 8, 4, 2)
34 PRIMER_PERMUTATION_PENALTY = 0.1 34 PRIMER_PERMUTATION_PENALTY = 0.1
35 35 END_OVERLAP = 5