Mercurial > repos > iuc > varscan_copynumber
diff varscan_copynumber.xml @ 2:ca1fd9dcda00 draft
planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/varscan commit 3932667bb4f6770a671141f7aab1f326e6dd1919
| author | iuc |
|---|---|
| date | Tue, 04 Dec 2018 06:11:07 -0500 |
| parents | 96c10f0cbf6c |
| children | 9ca2541369b8 |
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--- a/varscan_copynumber.xml Sun Jul 15 09:18:50 2018 -0400 +++ b/varscan_copynumber.xml Tue Dec 04 06:11:07 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="varscan_copynumber" name="VarScan copynumber" version="@VERSION@.1"> +<tool id="varscan_copynumber" name="VarScan copynumber" version="@VERSION@.2"> <description>Determine relative tumor copy number from tumor-normal pileups</description> <macros> <import>macros.xml</import> @@ -65,16 +65,8 @@ </test> </tests> - <help> -**VarScan Overview** - -VarScan_ performs variant detection for massively parallel sequencing data, such as exome, WGS, and transcriptome data. -It calls variants from a mpileup dataset and produces a VCF 4.1. Full documentation is available online_. - -This tool estimates the relative tumor copy number from tumor-normal pileups. - -.. _VarScan: http://dkoboldt.github.io/varscan/ -.. _online: http://dkoboldt.github.io/varscan/using-varscan.html + <help><![CDATA[ +@HELP_HEADER@ **Input** @@ -88,6 +80,6 @@ VarScan produces a VCF 4.1 dataset as output. - </help> + ]]></help> <expand macro="citations" /> </tool>