Mercurial > repos > iuc > variant_analyzer

diff read2mut.xml @ 1:833d9e71b864 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/variant_analyzer commit 60dc8db809909edf44d662683b1f392b9d5964bf"
author iuc
date Wed, 04 Dec 2019 21:20:55 +0000
parents 5441e79a30f2
children 18fcf8017300
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--- a/read2mut.xml	Wed Nov 20 22:47:11 2019 +0000
+++ b/read2mut.xml	Wed Dec 04 21:20:55 2019 +0000
@@ -1,15 +1,12 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="read2mut" name="Call specific mutations in reads:" version="1.0.0" profile="19.01">
+<tool id="read2mut" name="Call specific mutations in reads:" version="1.0.1" profile="19.01">
     <description>Looks for reads with mutation at known positions and calculates frequencies and stats.</description>
     <macros>
         <import>va_macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="2.7">python</requirement>
-        <requirement type="package" version="1.4.0">matplotlib</requirement>
-        <requirement type="package" version="0.15">pysam</requirement>
+    <expand macro="requirements">
         <requirement type="package" version="1.1.0">xlsxwriter</requirement>
-    </requirements>
+    </expand>
     <command><![CDATA[
         ln -s '$file2' bam_input.bam &&
         ln -s '${file2.metadata.bam_index}' bam_input.bam.bai &&