Mercurial > repos > iuc > vardict_java

comparison vardict.xml @ 1:e31b6f4d89ad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 2690164244722cfc32811015f2408b8275f06378"
author iuc
date Fri, 11 Sep 2020 21:06:52 +0000
parents 7966f5292530
children 6733325083d3
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0:7966f5292530 1:e31b6f4d89ad
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">vardict-java</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">vardict-java</requirement>
8 <requirement type="package" version="5.0.1">gawk</requirement> 8 <requirement type="package" version="5.0.1">gawk</requirement>
9 <requirement type="package" version="1.10">samtools</requirement> 9 <requirement type="package" version="1.10">samtools</requirement>
10 </requirements> 10 </requirements>
11 <expand macro="stdio" />
11 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
12 #if $select_mode.mode == "paired" 13 #if $select_mode.mode == "paired"
13 ln -s '$select_mode.normal' ./normal.bam && 14 ln -s '$select_mode.normal' ./normal.bam &&
14 ln -s '$select_mode.normal.metadata.bam_index' ./normal.bam.bai && 15 ln -s '$select_mode.normal.metadata.bam_index' ./normal.bam.bai &&
15 #end if 16 #end if