Mercurial > repos > iuc > vardict_java

comparison macros.xml @ 1:e31b6f4d89ad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 2690164244722cfc32811015f2408b8275f06378"
author iuc
date Fri, 11 Sep 2020 21:06:52 +0000
parents 7966f5292530
children 6733325083d3
comparison
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0:7966f5292530 1:e31b6f4d89ad
1 <macros> 1 <macros>
2 <token name="@VERSION_SUFFIX@">0</token> 2 <token name="@VERSION_SUFFIX@">0</token>
3 <token name="@TOOL_VERSION@">1.7.0</token> 3 <token name="@TOOL_VERSION@">1.8.1</token>
4 <xml name="ref_select"> 4 <xml name="ref_select">
5 <conditional name="reference_source"> 5 <conditional name="reference_source">
6 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome file"> 6 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome file">
7 <option value="cached" selected="True">Use a built-in genome</option> 7 <option value="cached" selected="True">Use a built-in genome</option>
8 <option value="history">Use a genome from the history</option> 8 <option value="history">Use a genome from the history</option>
15 <when value="history"> 15 <when value="history">
16 <param name="ref_file" format="fasta" type="data" label="Reference Genome File" /> 16 <param name="ref_file" format="fasta" type="data" label="Reference Genome File" />
17 </when> 17 </when>
18 </conditional> 18 </conditional>
19 </xml> 19 </xml>
20 <xml name="stdio">
21 <stdio>
22 <regex match="java.lang.OutOfMemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" />
23 </stdio>
24 </xml>
20 <xml name="input_default"> 25 <xml name="input_default">
21 <param name="tumor" type="data" format="bam" label="Tumor file" /> 26 <param name="tumor" type="data" format="bam" label="Tumor file" />
22 <param name="interval_file" type="data" format="txt" optional="true" label="Chromosomes" help="Restrict SNV calls to the following list of chromosomes (one per line)" /> 27 <param name="interval_file" type="data" format="txt" optional="true" label="Chromosomes" help="Restrict SNV calls to the following list of chromosomes (one per line)" />
23 </xml> 28 </xml>
24 </macros> 29 </macros>