Mercurial > repos > iuc > usher_ripples
changeset 0:359daa4b6d10 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/usher commit d44fdcd836306a2096d50bebb28d8faacdb0fbfd
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,36 @@ +<macros> + <token name="@TOOL_VERSION@">0.6.6</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">23.2</token> + <xml name="xrefs"> + <xrefs> + <xref type="bio.tools">usher</xref> + </xrefs> + </xml> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">usher</requirement> + </requirements> + </xml> + <xml name="citations"> + <citations> + <citation type="doi">10.1101/2020.09.26.314971</citation> + <citation type="doi">10.1101/2021.04.03.438321</citation> + <citation type="doi">10.1101/2021.08.04.455157</citation> + </citations> + </xml> + <xml name="version"> + <version_command>usher --version</version_command> + </xml> + <macro name="sanitize_string" > + <sanitizer invalid_char=""> + <valid initial="string.letters,string.digits"> + <add value="_"/> + <add value="-"/> + <add value="."/> + <add value=":"/> + <add value=","/> + </valid> + </sanitizer> + </macro> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ripples.xml Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,94 @@ +<tool id='usher_ripples' name='UShER RIPPLES' version='@TOOL_VERSION@+galaxy@VERSION_SUFFIX@' profile='@PROFILE@'> + <description>detect recombination events in large mutation annotated tree (MAT) files.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="xrefs"/> + <expand macro='requirements' /> + <expand macro="version"/> + <command detect_errors='exit_code'><![CDATA[ + ## get correct extension filenames + ln -sf '$input_mat' '$input_mat.element_identifier' && + + ripples + --input-mat '$input_mat.element_identifier' + + --branch-length $branch_length + --min-coordinate-range $min_coordinate_range + --max-coordinate-range $max_coordinate_range + --samples-filename '$samples_filename' + --parsimony-improvement $parsimony_improvement + --num-descendants $num_descendants + + --outdir ./ + --threads \${GALAXY_SLOTS:-1} > output_stdout.txt + + ]]> </command> + <inputs> + <param argument="--input-mat" type="data" format="protobuf3" label="Mutation-annotated tree object" help="Load a mutation annotated tree file, in protocol-buffers format (protobuf3)."/> + <param argument="--branch-length" type="integer" value="3" min="0" label="Minimum branch length" help="Minimum length of the branch to consider for recombination events. Default = 3." /> + <param argument="--min-coordinate-range" type="integer" value="1000" min="0" label="Minimal coordinate range" help="Minimum range of the genomic coordinates of the mutations on the recombinant branch. Default = 1,000." /> + <param argument="--max-coordinate-range" type="integer" value="10000000" min="0" label="Maximal coordinate range" help="Maximum range of the genomic coordinates of the mutations on the recombinant branch. Default = 10,000,000." /> + <param argument="--samples-filename" type="data" format="txt" label="Sample restriction file" help="Restrict the search to the ancestors of the samples specified in the input file." /> + <param argument="--parsimony-improvement" type="integer" value="3" min="0" label="Parsimony improvement" help="Minimum improvement in parsimony score of the recombinant sequences during the partial placement. Default = 3." /> + <param argument="--num-descendants" type="integer" value="10" label="Number of descendants" help="Minimum number of leaves that node should have to be considered for recombinatino. Default = 10." /> + </inputs> + <outputs> + <data name="recombination" format="tabular" from_work_dir='recombination.tsv' label="${tool.name} on ${on_string}: recombinations" > + <actions> + <action name="column_names" type="metadata" default="recomb_node_id,breakpoint-1_interval,breakpoint-2_interval,donor_node_id,donor_is_sibling,donor_parsimony,acceptor_node_id,acceptor_is_sibling,acceptor_parsimony,original_parsimony,min_starting_parsimony,recomb_parsimony" /> + </actions> + </data> + <data name="descendants" format="tabular" from_work_dir='descendants.tsv' label="${tool.name} on ${on_string}: descendants" > + <actions> + <action name="column_names" type="metadata" default="node_id,descendants" /> + </actions> + </data> + + </outputs> + <tests> + <test expect_num_outputs="2"> + <param name="input_mat" value="mutation_annotation.pb" ftype="protobuf3"/> + <param name="samples_filename" value="sample_names.txt" ftype="txt"/> + <output name="descendants" file="test_26_descendants.tabular" ftype="tabular"/> + <output name="recombination" file="test_26_recombination.tabular" ftype="tabular"/> + </test> + <test expect_num_outputs="2"> + <param name="input_mat" value="mutation_annotation.pb" ftype="protobuf3"/> + <param name="samples_filename" value="sample_names.txt" ftype="txt"/> + <param name="num_descendants" value="20" /> + <param name="parsimony_improvement" value="5" /> + <param name="branch_length" value="2" /> + <output name="descendants" file="test_27_descendants.tabular" ftype="tabular"/> + <output name="recombination" file="test_27_recombination.tabular" ftype="tabular"/> + </test> + </tests> + <help><![CDATA[ + +.. class:: infomark + +**Purpose** + +RIPPLES (Recombination Inference using Phylogenetic PLacEmentS) is a program used to detect recombination events in large mutation annotated tree (MAT) files. + +---- + +RIPPLES is a program to rapidly and sensitively detect recombinant nodes and their ancestors in a mutation-annotated tree (MAT). RIPPLES exploits the fact that recombinant lineages arising from diverse genomes will often be found on “long branches” which result from accommodating the divergent evolutionary histories of the two parental haplotypes. Therefore, RIPPLES first identifies long branches in a MAT. RIPPLES then exhaustively breaks the potential recombinant sequence into distinct segments that are differentiated by mutations on the recombinant sequence and separated by up to two breakpoints. For each set of breakpoints, RIPPLES places each of its corresponding segments using maximum parsimony to find the two parental nodes – a donor and an acceptor – that result in the highest parsimony score improvement relative to the original placement on the global phylogeny. The nodes for which a set of breakpoints along with two parental nodes can be identified that provide a parsimony score improvement above a user-specified threshold are reported as recombinants. + +.. class:: infomark + +**RIPPLES Common Options** + + - input-mat: Input mutation-annotated tree file [REQUIRED]. If only this argument is set, print the count of samples and nodes in the tree. + - branch-length (-l): Minimum length of the branch to consider for recombination events. Default = 3. + - min-coordinate-range (-r): Minimum range of the genomic coordinates of the mutations on the recombinant branch. Default = 1,000. + - max-coordinate-range (-R): Maximum range of the genomic coordinates of the mutations on the recombinant branch. Default = 10,000,000. + - samples-filename (-s): Restrict the search to the ancestors of the samples specified in the input file. + - parsimony-improvement (-p): Minimum improvement in parsimony score of the recombinant sequences during the partial placement. Default = 3. + - num-descendants (-n): Minimum number of leaves that node should have to be considered for recombinatino. Default = 10. + +You can find more information in the `RIPPLES official documentation page <https://usher-wiki.readthedocs.io/en/latest/ripples.html>`_. + + ]]> </help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/global_phylo.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/rename_samples.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,4 @@ +England/BRIS-1853249/2020|20-04-02 Spain/BRIS-1853249/2020|20-04-02_A +Wales/PHWC-25B04/2020|20-03-24 Spain/BRIS-1853249/2020|20-04-02_B +NPL/61-TW/2020|MT072688.1|20-01-13 Spain/BRIS-1853249/2020|20-04-02_C +Wales/LIVE-A6831/2020|20-03-16 Spain/BRIS-1853249/2020|20-04-02_D
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_01_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_140:1,node_14_condensed_6_leaves:0)node_136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_142:1,(node_16_condensed_2_leaves:0)node_145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_149:3,(node_37_condensed_2_leaves:0)node_150:2)node_148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_161:2,node_2_condensed_10_leaves:0)node_128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_3:1,(node_4_condensed_2_leaves:0)node_6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_9:2)node_8:2,node_5_condensed_5_leaves:0)node_7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_18:2)node_17:1)node_16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_22:2,(node_19_condensed_2_leaves:0)node_25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_31:2)node_30:1)node_21:4,(node_7_condensed_3_leaves:0)node_32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_34:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_69:1,node_9_condensed_2_leaves:0)node_36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_44:1)node_43:1,((France_B2334_2020:1,France_B2340_2020:1)node_49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_51:1,Italy_SPL1_2020:0)node_48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_57:1)node_55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_62:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_60:1)node_54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_66:1)node_64:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_78:2,node_30_condensed_4_leaves:0)node_74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_80:1)node_79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_92:2,(node_41_condensed_2_leaves:0)node_93:1,(node_42_condensed_2_leaves:0)node_94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_108:1,(node_46_condensed_16_leaves:0)node_109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_114:1)node_113:1,node_34_condensed_7_leaves:0)node_91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_119:2,node_25_condensed_15_leaves:0)node_73:1,node_11_condensed_3_leaves:0)node_70:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_02_mutation_path.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_85:A27669G +Sample2 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G +Sample5 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_02_uncondensed_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,Shanghai_SH0032_2020,Vietnam_VR03-38142_2020,Vietnam_38142_2020:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,Australia_QLD04_2020,Singapore_4_2020:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,Shandong_LY006_2020,Shandong_LY004_2020,Shandong_LY008_2020:0)node_7:1,(Chile_Talca-1_2020,Chile_Talca-2_2020:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,USA_WA1_2020,Fujian_8_2020,Hangzhou_ZJU-08_2020:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,Beijing_235_2020,Beijing_231_2020,Beijing_105_2020:0)node_16:2,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Hangzhou_ZJU-02_2020,Shanghai_SH0024_2020,Shanghai_SH0043_2020,Shanghai_SH0013_2020,Australia_NSW01_2020,Taiwan_3_2020,Taiwan_NTU01_2020,Belgium_GHB-03021_2020:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,USA_CA9_2020,USA_CA-CDPH-UC4_2020:0)node_17:1,(Australia_NSW08_2020,Australia_NSW10_2020:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(Germany_NRW-08_2020,Germany_NRW-01_2020,Netherlands_Limburg_4_2020:0)node_21:2)node_20:2,Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,Singapore_2_2020,Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(Shanghai_SH0022_2020,Shanghai_SH0023_2020:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,USA_CA8_2020,Wuhan_HBCDC-HB-02_2019:0)node_39:1,(Singapore_8_2020:1,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020:0)node_41:1,Australia_NSW03_2020,Australia_VIC03_2020:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,Chongqing_IVDC-CQ-001_2020,Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(USA_CA3_2020,USA_CA4_2020:0)node_46:1,Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020:0)node_45:1)node_44:1,((France_B2334_2020:1,France_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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_03_condensed_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ 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_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_78:2,node_30_condensed_4_leaves:0)node_74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_80:1)node_79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_92:2,(node_41_condensed_2_leaves:0)node_93:1,(node_42_condensed_2_leaves:0)node_94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_108:1,(node_46_condensed_16_leaves:0)node_109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_114:1)node_113:1,node_34_condensed_7_leaves:0)node_91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_119:2,node_25_condensed_15_leaves:0)node_73:1,node_11_condensed_3_leaves:0)node_70:3,node_1_condensed_27_leaves:0)node_1:0;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_03_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_140:1,node_14_condensed_6_leaves:0)node_136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_142:1,(node_16_condensed_2_leaves:0)node_145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_149:3,(node_37_condensed_2_leaves:0)node_150:2)node_148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_161:2,node_2_condensed_10_leaves:0)node_128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_3:1,(node_4_condensed_2_leaves:0)node_6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_9:2)node_8:2,node_5_condensed_5_leaves:0)node_7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_18:2)node_17:1)node_16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_22:2,(node_19_condensed_2_leaves:0)node_25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_31:2)node_30:1)node_21:4,(node_7_condensed_3_leaves:0)node_32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_34:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_69:1,node_9_condensed_2_leaves:0)node_36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_44:1)node_43:1,((France_B2334_2020:1,France_B2340_2020:1)node_49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_51:1,Italy_SPL1_2020:0)node_48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_57:1)node_55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_62:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_60:1)node_54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_66:1)node_64:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984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\ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_mutation_paths.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_85:A27669G +Sample2 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G +Sample5 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_subtree_1.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +(((((Sample5:0,Sample4:0)node_87:1,Sample3:0,Sample2:0)node_86:1,Sample1:0)node_85:1,((Germany_NRW-08_2020:0,Germany_NRW-01_2020:0,Netherlands_Limburg_4_2020:0)node_21:2,Germany_NRW-04_2020:0,Germany_NRW-07_2020:1)node_20:2,Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,Germany_NRW-05_2020:0,Germany_NRW-03_2020:0,Germany_NRW-02-1_2020:0,Germany_NRW-06_2020:0,Brazil_SPBR-11_2020:0)node_19:2,Wuhan_HBCDC-HB-01_2019:1,Australia_QLD09_2020:6)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_subtree_1_expanded.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,2 @@ +node_5_condensed_5_leaves: Germany_NRW-05_2020 Germany_NRW-03_2020 Germany_NRW-02-1_2020 Germany_NRW-06_2020 Brazil_SPBR-11_2020 +node_27_condensed_3_leaves: Germany_NRW-08_2020 Germany_NRW-01_2020 Netherlands_Limburg_4_2020
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_subtree_1_mutations.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,27 @@ +node_1: +node_19: G1440A,G2891A +node_85: A27669G +node_86: G14948A +node_87: A23013G +Sample5: +Sample4: +Sample3: +Sample2: +Sample1: +node_20: C4655T,C22323T +node_21: G8422A,C29546A +Germany_NRW-08_2020: +Germany_NRW-01_2020: +Netherlands_Limburg_4_2020: +Germany_NRW-04_2020: +Germany_NRW-07_2020: T13494C +Germany_NRW-10_2020: G7798T +Germany_NRW-09_2020: C27849T +Poland_PL_P1_2020: G198A +Germany_NRW-05_2020: +Germany_NRW-03_2020: +Germany_NRW-02-1_2020: +Germany_NRW-06_2020: +Brazil_SPBR-11_2020: +Wuhan_HBCDC-HB-01_2019: T21656A +Australia_QLD09_2020: G1397A,C11074T,G11083T,T28688C,G29374A,G29742T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_04_uncondensed_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,Shanghai_SH0032_2020,Vietnam_VR03-38142_2020,Vietnam_38142_2020:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,Australia_QLD04_2020,Singapore_4_2020:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,Shandong_LY006_2020,Shandong_LY004_2020,Shandong_LY008_2020:0)node_7:1,(Chile_Talca-1_2020,Chile_Talca-2_2020:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,USA_WA1_2020,Fujian_8_2020,Hangzhou_ZJU-08_2020:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,Beijing_235_2020,Beijing_231_2020,Beijing_105_2020:0)node_16:2,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Hangzhou_ZJU-02_2020,Shanghai_SH0024_2020,Shanghai_SH0043_2020,Shanghai_SH0013_2020,Australia_NSW01_2020,Taiwan_3_2020,Taiwan_NTU01_2020,Belgium_GHB-03021_2020:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,USA_CA9_2020,USA_CA-CDPH-UC4_2020:0)node_17:1,(Australia_NSW08_2020,Australia_NSW10_2020:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(Germany_NRW-08_2020,Germany_NRW-01_2020,Netherlands_Limburg_4_2020:0)node_21:2)node_20:2,Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,Singapore_2_2020,Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(Shanghai_SH0022_2020,Shanghai_SH0023_2020:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,USA_CA8_2020,Wuhan_HBCDC-HB-02_2019:0)node_39:1,(Singapore_8_2020:1,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020:0)node_41:1,Australia_NSW03_2020,Australia_VIC03_2020:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,Chongqing_IVDC-CQ-001_2020,Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(USA_CA3_2020,USA_CA4_2020:0)node_46:1,Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(England_200940527_2020,England_200990725_2020,England_200990724_2020:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(Finland_FIN01032020_2020,Finland_FIN-274_2020,Finland_FIN03032020B_2020:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((England_20100121006_2020,England_20100121007_2020:0)node_61:2,England_20100004706_2020,England_20100004806_2020,England_20100005406_2020,England_200990660_2020:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(France_HF1995_2020,France_HF2239_2020:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,France_HF2196_2020,Switzerland_GE6679_2020,Switzerland_BE2536_2020,Switzerland_GE4135_2020:0)node_66:1,(Hungary_mbl1_2020:1,Switzerland_GE5373_2020,Switzerland_GE3121_2020,Panama_328677_2020,Georgia_Tb-712_2020,Spain_Galicia201663_2020:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(Netherlands_Limburg_3_2020,Netherlands_Utrecht_2_2020:0)node_69:2,(Switzerland_GR2988_2020,Switzerland_GR3043_2020:0)node_70:1,(Switzerland_VD0503_2020,Switzerland_VD5615_2020:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,Switzerland_GE8102_2020,Brazil_SPBR-08_2020,Brazil_SPBR-13_2020:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,Switzerland_GE1402_2020,Switzerland_AG7120_2020,Netherlands_Helmond_1363548_2020:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,Switzerland_GE3895_2020,Switzerland_GE0199_2020,Switzerland_BL0902_2020,Switzerland_GE9586_2020,Switzerland_1000477806_2020,Switzerland_BS0914_2020:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(Netherlands_NoordHolland_1_2020,Netherlands_Utrecht_10_2020,Germany_NRW-011_2020,Netherlands_Utrecht_13_2020,Netherlands_Gelderland_3_2020,Finland_FIN-508_2020,Brazil_SPBR-04_2020,Brazil_SPBR-07_2020,Netherlands_Utrecht_4_2020,Netherlands_Limburg_2_2020,Brazil_SPBR-03_2020,Netherlands_Utrecht_5_2020,Netherlands_Gelderland_1_2020,Ireland_Dublin-19072_2020,Netherlands_Utrecht_7_2020,Netherlands_Overijssel_1_2020:0)node_77:1,(Belgium_UMF-03025_2020:0,(Belgium_DBD-03024_2020,Belgium_QKJ-03015_2020:0)node_79:1)node_78:1,Mexico_CDMX-InDRE_01_2020,Vietnam_39607_2020,Netherlands_Overijssel_2_2020,Switzerland_1000477796_2020,England_20099038206_2020,Vietnam_CM296_2020,Vietnam_CM295_2020:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,Switzerland_TI9486_2020,France_N2223_2020,Netherlands_Utrecht_3_2020:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,France_B2337_2020,Finland_FIN-455_2020,France_B2336_2020,France_B2335_2020,France_B2343_2020,France_B2346_2020:0)node_82:2,Italy_CDG1_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Brazil_SPBR-01_2020,Ireland_Limerick-19934_2020,Brazil_SPBR-06_2020,Brazil_SPBR-05_2020,Brazil_SPBR-09_2020,France_GE1973_2020,Ireland_Limerick-19933_2020,Denmark_SSI-09_2020,Ireland_Limerick-19935_2020,Netherlands_Utrecht_11_2020,Netherlands_Utrecht_8_2020:0)node_59:1,Finland_FIN-114_2020,Germany_BavPat1_2020,Shanghai_SH0014_2020:0)node_58:3,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Zhejiang_WZ-02_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020,Japan_OS-20-07-1_2020,Chongqing_ZX01_2020,Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020,Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020,USA_CA6_2020,Taiwan_4_2020,France_RA739_2020,England_200690300_2020:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_05_current_tree.nw Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_05_parsimony_scores.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1766 @@ +#Sample Tree node Parsimony score Optimal (y/n) Parsimony-increasing mutations (for optimal nodes) +Sample1 node_1 3 n N/A +Sample1 node_2 4 n N/A +Sample1 Shanghai_SH0007_2020 4 n N/A +Sample1 Hangzhou_ZJU-07_2020 4 n N/A +Sample1 Wuhan_IPBCAMS-WH-03_2019 4 n N/A +Sample1 Wuhan_WH01_2019 4 n N/A +Sample1 Wuhan_WIV07_2019 4 n N/A +Sample1 Shanghai_SH0093_2020 4 n N/A +Sample1 Wuhan_HBCDC-HB-01_2019 4 n N/A +Sample1 Wuhan_IPBCAMS-WH-01_2019 4 n N/A +Sample1 Wuhan_IVDC-HB-04_2020 4 n N/A +Sample1 Wuhan_IVDC-HB-05_2019 4 n N/A +Sample1 Wuhan_WIV05_2019 4 n N/A +Sample1 Sweden_01_2020 4 n N/A +Sample1 Taiwan_2_2020 4 n N/A +Sample1 USA_CA2_2020 4 n N/A +Sample1 Shanghai_SH0040_2020 4 n N/A +Sample1 Singapore_7_2020 4 n N/A +Sample1 Australia_VIC02_2020 4 n N/A +Sample1 France_IDF0515_2020 4 n N/A +Sample1 Hangzhou_ZJU-01_2020 4 n N/A +Sample1 Shanghai_SH0037_2020 4 n N/A +Sample1 Nepal_61_2020 4 n N/A +Sample1 China_WH-09_2020 4 n N/A +Sample1 Jiangxi_IVDC-JX-002_2020 4 n N/A +Sample1 Zhejiang_WZ-01_2020 4 n N/A +Sample1 Japan_KY-V-029_2020 4 n N/A +Sample1 Hangzhou_ZJU-03_2020 4 n N/A +Sample1 Netherlands_Utrecht_12_2020 4 n N/A +Sample1 Singapore_1_2020 4 n N/A +Sample1 Taiwan_NTU02_2020 4 n N/A +Sample1 England_SHEF-BFD36_2020 4 n N/A +Sample1 France_IDF0626_2020 4 n N/A +Sample1 Malaysia_MKAK-CL-2020-7554_2020 4 n N/A +Sample1 Cambodia_0012_2020 4 n N/A +Sample1 node_17 4 n N/A +Sample1 node_18 4 n N/A +Sample1 node_19 1 y G1440A +Sample1 node_22 4 n N/A +Sample1 node_23 4 n N/A +Sample1 node_24 4 n N/A +Sample1 node_27 4 n N/A +Sample1 node_28 4 n N/A +Sample1 node_37 4 n N/A +Sample1 node_38 4 n N/A +Sample1 node_39 4 n N/A +Sample1 node_40 4 n N/A +Sample1 node_42 4 n N/A +Sample1 node_43 4 n N/A +Sample1 node_44 4 n N/A +Sample1 node_47 4 n N/A +Sample1 node_50 4 n N/A +Sample1 node_55 4 n N/A +Sample1 node_58 4 n N/A +Sample1 node_1_condensed_27_leaves 4 n N/A +Sample1 Wuhan_HBCDC-HB-06_2020 6 n N/A +Sample1 Wuhan_HBCDC-HB-02_2020 6 n N/A +Sample1 Wuhan_HBCDC-HB-04_2020 6 n N/A +Sample1 Shanghai_SH0075_2020 6 n N/A +Sample1 Shanghai_SH0010_2020 6 n N/A +Sample1 Tianmen_HBCDC-HB-07_2020 6 n N/A +Sample1 Shanghai_SH0041_2020 6 n N/A +Sample1 India_1-31_2020 6 n N/A +Sample1 Shanghai_SH0009_2020 6 n N/A +Sample1 Malaysia_MKAK-CL-2020-5096_2020 6 n N/A +Sample1 node_3 6 n N/A +Sample1 node_4 6 n N/A +Sample1 node_5 6 n N/A +Sample1 node_7 6 n N/A +Sample1 node_8 6 n N/A +Sample1 England_02_2020 6 n N/A +Sample1 node_9 6 n N/A +Sample1 node_13 6 n N/A +Sample1 node_15 6 n N/A +Sample1 node_16 6 n N/A +Sample1 node_2_condensed_10_leaves 6 n N/A +Sample1 USA_CA-CDPH-UC2_2020 5 n N/A +Sample1 USA_CA-CDPH-UC3_2020 5 n N/A +Sample1 node_3_condensed_2_leaves 5 n N/A +Sample1 node_4_condensed_2_leaves 5 n N/A +Sample1 Germany_NRW-10_2020 2 n N/A +Sample1 Germany_NRW-09_2020 2 n N/A +Sample1 Poland_PL_P1_2020 2 n N/A +Sample1 node_20 2 n N/A +Sample1 node_5_condensed_5_leaves 2 n N/A +Sample1 Malaysia_MKAK-CL-2020-5045_2020 5 n N/A +Sample1 node_6_condensed_3_leaves 5 n N/A +Sample1 Jiangsu_JS01_2020 5 n N/A +Sample1 Shanghai_SH0031_2020 5 n N/A +Sample1 Australia_NSW02_2020 5 n N/A +Sample1 node_25 5 n N/A +Sample1 India_1-27_2020 5 n N/A +Sample1 Shanghai_SH0011_2020 5 n N/A +Sample1 Fujian_13_2020 5 n N/A +Sample1 Singapore_11_2020 5 n N/A +Sample1 USA_WI1_2020 5 n N/A +Sample1 Wuhan_HBCDC-HB-05_2020 8 n N/A +Sample1 Shandong_IVDC-SD-001_2020 8 n N/A +Sample1 England_200960041_2020 8 n N/A +Sample1 Australia_NSW05_2020 8 n N/A +Sample1 node_29 8 n N/A +Sample1 node_31 8 n N/A +Sample1 node_32 8 n N/A +Sample1 Kuwait_KU17_2020 8 n N/A +Sample1 node_33 8 n N/A +Sample1 node_34 8 n N/A +Sample1 node_35 8 n N/A +Sample1 node_7_condensed_3_leaves 6 n N/A +Sample1 Jiangsu_JS02_2020 5 n N/A +Sample1 Shanghai_SH0008_2020 5 n N/A +Sample1 USA_CA5_2020 5 n N/A +Sample1 Wuhan_WIV02_2019 5 n N/A +Sample1 node_8_condensed_2_leaves 5 n N/A +Sample1 Singapore_8_2020 5 n N/A +Sample1 node_41 5 n N/A +Sample1 node_9_condensed_2_leaves 5 n N/A +Sample1 Japan_Hu_DP_Kng_19-027_2020 5 n N/A +Sample1 node_10_condensed_3_leaves 5 n N/A +Sample1 Hangzhou_ZJU-09_2020 5 n N/A +Sample1 Australia_VIC01_2020 5 n N/A +Sample1 USA_MA1_2020 5 n N/A +Sample1 node_45 5 n N/A +Sample1 node_48 6 n N/A +Sample1 node_49 6 n N/A +Sample1 Italy_SPL1_2020 6 n N/A +Sample1 England_20102000106_2020 7 n N/A +Sample1 node_51 7 n N/A +Sample1 node_53 7 n N/A +Sample1 England_200960515_2020 7 n N/A +Sample1 node_54 7 n N/A +Sample1 Netherlands_Utrecht_19_2020 5 n N/A +Sample1 Netherlands_Limburg_6_2020 5 n N/A +Sample1 Netherlands_Naarden_1364774_2020 5 n N/A +Sample1 node_56 5 n N/A +Sample1 node_57 5 n N/A +Sample1 Shanghai_SH0086_2020 7 n N/A +Sample1 node_59 7 n N/A +Sample1 node_11_condensed_3_leaves 7 n N/A +Sample1 France_GE1583_2020 11 n N/A +Sample1 Georgia_Tb-390_2020 11 n N/A +Sample1 Spain_Valencia6_2020 11 n N/A +Sample1 Spain_CastillayLeon201437_2020 11 n N/A +Sample1 node_12_condensed_6_leaves 11 n N/A +Sample1 Sichuan_IVDC-SC-001_2020 9 n N/A +Sample1 USA_CA1_2020 9 n N/A +Sample1 USA_IL2_2020 9 n N/A +Sample1 Vietnam_CM99_2020 9 n N/A +Sample1 node_13_condensed_3_leaves 9 n N/A +Sample1 Shanghai_SH0035_2020 8 n N/A +Sample1 Australia_QLD02_2020 8 n N/A +Sample1 Australia_QLD03_2020 8 n N/A +Sample1 Australia_VIC07_2020 8 n N/A +Sample1 node_6 8 n N/A +Sample1 node_14_condensed_6_leaves 8 n N/A +Sample1 Shandong_LY003_2020 7 n N/A +Sample1 Shandong_LY005_2020 7 n N/A +Sample1 node_15_condensed_3_leaves 7 n N/A +Sample1 node_16_condensed_2_leaves 10 n N/A +Sample1 Chongqing_YC01_2020 7 n N/A +Sample1 node_10 7 n N/A +Sample1 Malaysia_MKAK-CL-2020-6430_2020 7 n N/A +Sample1 node_17_condensed_3_leaves 7 n N/A +Sample1 Shanghai_SH0059_2020 7 n N/A +Sample1 USA_TX1_2020 7 n N/A +Sample1 node_14 7 n N/A +Sample1 Shanghai_SH0004_2020 7 n N/A +Sample1 Germany_BavPat3_2020 7 n N/A +Sample1 Shanghai_SH0005_2020 7 n N/A +Sample1 Yunnan_IVDC-YN-003_2020 7 n N/A +Sample1 USA_AZ1_2020 7 n N/A +Sample1 Anhui_SZ005_2020 5 n N/A +Sample1 Beijing_233_2020 8 n N/A +Sample1 node_18_condensed_3_leaves 8 n N/A +Sample1 Germany_NRW-04_2020 4 n N/A +Sample1 Germany_NRW-07_2020 4 n N/A +Sample1 node_21 4 n N/A +Sample1 Hangzhou_ZJU-06_2020 6 n N/A +Sample1 node_26 6 n N/A +Sample1 Georgia_Tb-82_2020 10 n N/A +Sample1 Australia_NSW09_2020 10 n N/A +Sample1 node_30 10 n N/A +Sample1 Kuwait_KU18_2020 10 n N/A +Sample1 Kuwait_KU12_2020 10 n N/A +Sample1 Australia_NSW06_2020 10 n N/A +Sample1 node_19_condensed_2_leaves 10 n N/A +Sample1 Taiwan_CGMH-CGU-04_2020 11 n N/A +Sample1 node_20_condensed_2_leaves 11 n N/A +Sample1 Canada_BC_17397_2020 9 n N/A +Sample1 Canada_BC_13297_2020 9 n N/A +Sample1 Australia_QLD09_2020 9 n N/A +Sample1 Australia_NSW07_2020 9 n N/A +Sample1 USA_NY1-PV08001_2020 9 n N/A +Sample1 Canada_BC_37_0-2_2020 9 n N/A +Sample1 Canada_BC_69243_2020 9 n N/A +Sample1 node_36 9 n N/A +Sample1 node_21_condensed_3_leaves 6 n N/A +Sample1 Shanghai_SH0058_2020 6 n N/A +Sample1 node_46 6 n N/A +Sample1 node_22_condensed_2_leaves 6 n N/A +Sample1 France_B2334_2020 8 n N/A +Sample1 France_B2340_2020 8 n N/A +Sample1 Georgia_Tb-468_2020 7 n N/A +Sample1 Georgia_Tb-537_2020 7 n N/A +Sample1 Georgia_Tb-54_2020 7 n N/A +Sample1 England_09c_2020 9 n N/A +Sample1 Brazil_ES-225_2020 9 n N/A +Sample1 England_20100001406_2020 9 n N/A +Sample1 node_52 9 n N/A +Sample1 Brazil_SPBR-10_2020 6 n N/A +Sample1 Switzerland_1000477102_2020 8 n N/A +Sample1 Brazil_SPBR-02_2020 8 n N/A +Sample1 England_200990006_2020 8 n N/A +Sample1 Netherlands_Utrecht_18_2020 8 n N/A +Sample1 node_23_condensed_3_leaves 8 n N/A +Sample1 node_24_condensed_2_leaves 6 n N/A +Sample1 Netherlands_Oss_1363500_2020 6 n N/A +Sample1 Netherlands_Tilburg_1363354_2020 6 n N/A +Sample1 Finland_FIN-25_2020 8 n N/A +Sample1 Belgium_DB-03023_2020 8 n N/A +Sample1 Denmark_SSI-102_2020 8 n N/A +Sample1 Denmark_SSI-02_2020 8 n N/A +Sample1 Belgium_BM-03012_2020 8 n N/A +Sample1 England_20100022706_2020 8 n N/A +Sample1 Denmark_SSI-04_2020 8 n N/A +Sample1 Taiwan_NTU03_2020 8 n N/A +Sample1 Finland_FIN03032020A_2020 8 n N/A +Sample1 Switzerland_GE4984_2020 8 n N/A +Sample1 Switzerland_AG0361_2020 8 n N/A +Sample1 Finland_FIN-266_2020 8 n N/A +Sample1 Luxembourg_Lux1_2020 8 n N/A +Sample1 Japan_SMU-0311S3_2020 8 n N/A +Sample1 Denmark_SSI-03_2020 8 n N/A +Sample1 Netherlands_Gelderland_2_2020 8 n N/A +Sample1 Georgia_Tb-273_2020 8 n N/A +Sample1 Belgium_SH-03014_2020 8 n N/A +Sample1 node_60 8 n N/A +Sample1 node_62 8 n N/A +Sample1 Belgium_VAG-03013_2020 8 n N/A +Sample1 node_64 8 n N/A +Sample1 node_65 8 n N/A +Sample1 node_66 8 n N/A +Sample1 node_67 8 n N/A +Sample1 node_68 8 n N/A +Sample1 node_80 8 n N/A +Sample1 node_81 8 n N/A +Sample1 node_82 8 n N/A +Sample1 node_25_condensed_15_leaves 8 n N/A +Sample1 Netherlands_Utrecht_16_2020 9 n N/A +Sample1 Netherlands_Utrecht_17_2020 9 n N/A +Sample1 node_11 9 n N/A +Sample1 node_12 9 n N/A +Sample1 Japan_TY-WK-012_2020 8 n N/A +Sample1 node_26_condensed_2_leaves 8 n N/A +Sample1 node_27_condensed_3_leaves 6 n N/A +Sample1 Shanghai_SH0085_2020 8 n N/A +Sample1 Shanghai_SH0094_2020 8 n N/A +Sample1 Canada_BC_25211_2020 11 n N/A +Sample1 Kuwait_KU09_2020 11 n N/A +Sample1 England_200990002_2020 11 n N/A +Sample1 Germany_BavPat2_2020 11 n N/A +Sample1 node_28_condensed_2_leaves 7 n N/A +Sample1 node_29_condensed_3_leaves 10 n N/A +Sample1 node_61 9 n N/A +Sample1 node_30_condensed_4_leaves 9 n N/A +Sample1 France_HF2174_2020 10 n N/A +Sample1 France_GE1977_2020 10 n N/A +Sample1 France_HF1684_2020 10 n N/A +Sample1 node_63 10 n N/A +Sample1 Netherlands_Utrecht_1363564_2020 12 n N/A +Sample1 node_31_condensed_2_leaves 12 n N/A +Sample1 England_20099107406_2020 9 n N/A +Sample1 Georgia_Tb_2020 9 n N/A +Sample1 France_BFC2094_2020 9 n N/A +Sample1 France_BFC2147_2020 9 n N/A +Sample1 node_32_condensed_4_leaves 9 n N/A +Sample1 Hungary_mbl1_2020 9 n N/A +Sample1 node_33_condensed_5_leaves 9 n N/A +Sample1 Nigeria_Lagos01_2020 11 n N/A +Sample1 Netherlands_Delft_1363424_2020 11 n N/A +Sample1 Denmark_SSI-01_2020 11 n N/A +Sample1 England_200990723_2020 11 n N/A +Sample1 Switzerland_TI2045_2020 11 n N/A +Sample1 Switzerland_1000477377_2020 11 n N/A +Sample1 Denmark_SSI-05_2020 11 n N/A +Sample1 Chile_Santiago-2_2020 11 n N/A +Sample1 Brazil_SPBR-14_2020 11 n N/A +Sample1 Finland_FIN-318_2020 11 n N/A +Sample1 Netherlands_Limburg_5_2020 11 n N/A +Sample1 Belgium_DBA-03032_2020 11 n N/A +Sample1 Switzerland_SZ1417_2020 11 n N/A +Sample1 Belgium_GMH-03022_2020 11 n N/A +Sample1 Netherlands_Utrecht_14_2020 11 n N/A +Sample1 Netherlands_Utrecht_1_2020 11 n N/A +Sample1 Finland_FIN03032020C_2020 11 n N/A +Sample1 Netherlands_Berlicum_1363564_2020 11 n N/A +Sample1 node_69 11 n N/A +Sample1 node_70 11 n N/A +Sample1 node_71 11 n N/A +Sample1 node_72 11 n N/A +Sample1 node_73 11 n N/A +Sample1 node_74 11 n N/A +Sample1 node_75 11 n N/A +Sample1 Belgium_BC-03016_2020 11 n N/A +Sample1 node_76 11 n N/A +Sample1 node_77 11 n N/A +Sample1 node_78 11 n N/A +Sample1 node_34_condensed_7_leaves 11 n N/A +Sample1 Netherlands_NoordHolland_3_2020 9 n N/A +Sample1 Netherlands_Flevoland_1_2020 9 n N/A +Sample1 NetherlandsL_Houten_1363498_2020 9 n N/A +Sample1 Italy_UniSR1_2020 9 n N/A +Sample1 France_N1620_2020 9 n N/A +Sample1 node_35_condensed_3_leaves 9 n N/A +Sample1 Georgia_Tb-673_2020 10 n N/A +Sample1 France_B2330_2020 10 n N/A +Sample1 France_PL1643_2020 10 n N/A +Sample1 France_HF1988_2020 10 n N/A +Sample1 France_B2348_2020 10 n N/A +Sample1 node_83 10 n N/A +Sample1 node_84 10 n N/A +Sample1 Netherlands_Haarlem_1363688_2020 10 n N/A +Sample1 node_36_condensed_6_leaves 10 n N/A +Sample1 USA_CA-CDPH-UC7_2020 12 n N/A +Sample1 USA_CA-CDPH-UC9_2020 12 n N/A +Sample1 node_37_condensed_2_leaves 11 n N/A +Sample1 node_38_condensed_2_leaves 11 n N/A +Sample1 node_39_condensed_2_leaves 11 n N/A +Sample1 node_40_condensed_2_leaves 13 n N/A +Sample1 node_41_condensed_2_leaves 12 n N/A +Sample1 node_42_condensed_2_leaves 12 n N/A +Sample1 Switzerland_1000477797_2020 12 n N/A +Sample1 Brazil_BA-312_2020 12 n N/A +Sample1 node_43_condensed_3_leaves 12 n N/A +Sample1 Finland_FIN-313_2020 13 n N/A +Sample1 Netherlands_Utrecht_15_2020 13 n N/A +Sample1 Switzerland_GE1422_2020 12 n N/A +Sample1 Netherlands_Diemen_1363454_2020 12 n N/A +Sample1 node_44_condensed_3_leaves 12 n N/A +Sample1 Switzerland_BE6651_2020 12 n N/A +Sample1 Netherlands_NoordHolland_2_2020 12 n N/A +Sample1 node_45_condensed_6_leaves 12 n N/A +Sample1 Switzerland_1000477757_2020 12 n N/A +Sample1 Brazil_SPBR-12_2020 12 n N/A +Sample1 Germany_Baden-Wuerttemberg-1_2020 12 n N/A +Sample1 node_46_condensed_16_leaves 12 n N/A +Sample1 Belgium_UMF-03025_2020 12 n N/A +Sample1 node_79 12 n N/A +Sample1 France_B2351_2020 11 n N/A +Sample1 France_B2344_2020 11 n N/A +Sample1 France_B2349_2020 11 n N/A +Sample1 France_IDF2256_2020 11 n N/A +Sample1 France_HF1871_2020 11 n N/A +Sample1 node_47_condensed_2_leaves 13 n N/A +Sample2 node_1 4 n N/A +Sample2 node_2 5 n N/A +Sample2 Shanghai_SH0007_2020 5 n N/A +Sample2 Hangzhou_ZJU-07_2020 5 n N/A +Sample2 Wuhan_IPBCAMS-WH-03_2019 5 n N/A +Sample2 Wuhan_WH01_2019 5 n N/A +Sample2 Wuhan_WIV07_2019 5 n N/A +Sample2 Shanghai_SH0093_2020 5 n N/A +Sample2 Wuhan_HBCDC-HB-01_2019 5 n N/A +Sample2 Wuhan_IPBCAMS-WH-01_2019 5 n N/A +Sample2 Wuhan_IVDC-HB-04_2020 5 n N/A +Sample2 Wuhan_IVDC-HB-05_2019 5 n N/A +Sample2 Wuhan_WIV05_2019 5 n N/A +Sample2 Sweden_01_2020 5 n N/A +Sample2 Taiwan_2_2020 5 n N/A +Sample2 USA_CA2_2020 5 n N/A +Sample2 Shanghai_SH0040_2020 5 n N/A +Sample2 Singapore_7_2020 5 n N/A +Sample2 Australia_VIC02_2020 5 n N/A +Sample2 France_IDF0515_2020 5 n N/A +Sample2 Hangzhou_ZJU-01_2020 5 n N/A +Sample2 Shanghai_SH0037_2020 5 n N/A +Sample2 Nepal_61_2020 5 n N/A +Sample2 China_WH-09_2020 5 n N/A 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Malaysia_MKAK-CL-2020-5045_2020 6 n N/A +Sample2 node_6_condensed_3_leaves 6 n N/A +Sample2 Jiangsu_JS01_2020 6 n N/A +Sample2 Shanghai_SH0031_2020 6 n N/A +Sample2 Australia_NSW02_2020 6 n N/A +Sample2 node_25 6 n N/A +Sample2 India_1-27_2020 6 n N/A +Sample2 Shanghai_SH0011_2020 6 n N/A +Sample2 Fujian_13_2020 6 n N/A +Sample2 Singapore_11_2020 6 n N/A +Sample2 USA_WI1_2020 6 n N/A +Sample2 Wuhan_HBCDC-HB-05_2020 9 n N/A +Sample2 Shandong_IVDC-SD-001_2020 9 n N/A +Sample2 England_200960041_2020 9 n N/A +Sample2 Australia_NSW05_2020 9 n N/A +Sample2 node_29 9 n N/A +Sample2 node_31 9 n N/A +Sample2 node_32 9 n N/A +Sample2 Kuwait_KU17_2020 9 n N/A +Sample2 node_33 9 n N/A +Sample2 node_34 9 n N/A +Sample2 node_35 9 n N/A +Sample2 node_7_condensed_3_leaves 7 n N/A +Sample2 Jiangsu_JS02_2020 6 n N/A +Sample2 Shanghai_SH0008_2020 6 n N/A +Sample2 USA_CA5_2020 6 n N/A +Sample2 Wuhan_WIV02_2019 6 n N/A +Sample2 node_8_condensed_2_leaves 6 n N/A +Sample2 Singapore_8_2020 6 n N/A +Sample2 node_41 6 n N/A +Sample2 node_9_condensed_2_leaves 6 n N/A +Sample2 Japan_Hu_DP_Kng_19-027_2020 6 n N/A +Sample2 node_10_condensed_3_leaves 6 n N/A +Sample2 Hangzhou_ZJU-09_2020 6 n N/A +Sample2 Australia_VIC01_2020 6 n N/A +Sample2 USA_MA1_2020 6 n N/A +Sample2 node_45 6 n N/A +Sample2 node_48 7 n N/A +Sample2 node_49 7 n N/A +Sample2 Italy_SPL1_2020 7 n N/A +Sample2 England_20102000106_2020 8 n N/A +Sample2 node_51 8 n N/A +Sample2 node_53 8 n N/A +Sample2 England_200960515_2020 8 n N/A +Sample2 node_54 8 n N/A +Sample2 Netherlands_Utrecht_19_2020 6 n N/A +Sample2 Netherlands_Limburg_6_2020 6 n N/A +Sample2 Netherlands_Naarden_1364774_2020 6 n N/A +Sample2 node_56 6 n N/A +Sample2 node_57 6 n N/A +Sample2 Shanghai_SH0086_2020 8 n N/A +Sample2 node_59 8 n N/A +Sample2 node_11_condensed_3_leaves 8 n N/A +Sample2 France_GE1583_2020 12 n N/A +Sample2 Georgia_Tb-390_2020 12 n N/A +Sample2 Spain_Valencia6_2020 12 n N/A +Sample2 Spain_CastillayLeon201437_2020 12 n N/A +Sample2 node_12_condensed_6_leaves 12 n N/A +Sample2 Sichuan_IVDC-SC-001_2020 10 n N/A +Sample2 USA_CA1_2020 10 n N/A +Sample2 USA_IL2_2020 10 n N/A +Sample2 Vietnam_CM99_2020 10 n N/A +Sample2 node_13_condensed_3_leaves 10 n N/A +Sample2 Shanghai_SH0035_2020 9 n N/A +Sample2 Australia_QLD02_2020 9 n N/A +Sample2 Australia_QLD03_2020 9 n N/A +Sample2 Australia_VIC07_2020 9 n N/A +Sample2 node_6 9 n N/A +Sample2 node_14_condensed_6_leaves 9 n N/A +Sample2 Shandong_LY003_2020 8 n N/A +Sample2 Shandong_LY005_2020 8 n N/A +Sample2 node_15_condensed_3_leaves 8 n N/A +Sample2 node_16_condensed_2_leaves 11 n N/A +Sample2 Chongqing_YC01_2020 8 n N/A +Sample2 node_10 8 n N/A +Sample2 Malaysia_MKAK-CL-2020-6430_2020 8 n N/A +Sample2 node_17_condensed_3_leaves 8 n N/A +Sample2 Shanghai_SH0059_2020 8 n N/A +Sample2 USA_TX1_2020 8 n N/A +Sample2 node_14 8 n N/A +Sample2 Shanghai_SH0004_2020 8 n N/A +Sample2 Germany_BavPat3_2020 8 n N/A +Sample2 Shanghai_SH0005_2020 8 n N/A +Sample2 Yunnan_IVDC-YN-003_2020 8 n N/A +Sample2 USA_AZ1_2020 8 n N/A +Sample2 Anhui_SZ005_2020 6 n N/A +Sample2 Beijing_233_2020 9 n N/A +Sample2 node_18_condensed_3_leaves 9 n N/A +Sample2 Germany_NRW-04_2020 5 n N/A +Sample2 Germany_NRW-07_2020 5 n N/A +Sample2 node_21 5 n N/A +Sample2 Hangzhou_ZJU-06_2020 7 n N/A +Sample2 node_26 7 n N/A +Sample2 Georgia_Tb-82_2020 11 n N/A +Sample2 Australia_NSW09_2020 11 n N/A +Sample2 node_30 11 n N/A +Sample2 Kuwait_KU18_2020 11 n N/A +Sample2 Kuwait_KU12_2020 11 n N/A +Sample2 Australia_NSW06_2020 11 n N/A +Sample2 node_19_condensed_2_leaves 11 n N/A +Sample2 Taiwan_CGMH-CGU-04_2020 12 n N/A +Sample2 node_20_condensed_2_leaves 12 n N/A +Sample2 Canada_BC_17397_2020 10 n N/A +Sample2 Canada_BC_13297_2020 10 n N/A +Sample2 Australia_QLD09_2020 10 n N/A +Sample2 Australia_NSW07_2020 10 n N/A +Sample2 USA_NY1-PV08001_2020 10 n N/A +Sample2 Canada_BC_37_0-2_2020 10 n N/A +Sample2 Canada_BC_69243_2020 10 n N/A +Sample2 node_36 10 n N/A +Sample2 node_21_condensed_3_leaves 7 n N/A 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n N/A +Sample2 England_20100022706_2020 9 n N/A +Sample2 Denmark_SSI-04_2020 9 n N/A +Sample2 Taiwan_NTU03_2020 9 n N/A +Sample2 Finland_FIN03032020A_2020 9 n N/A +Sample2 Switzerland_GE4984_2020 9 n N/A +Sample2 Switzerland_AG0361_2020 9 n N/A +Sample2 Finland_FIN-266_2020 9 n N/A +Sample2 Luxembourg_Lux1_2020 9 n N/A +Sample2 Japan_SMU-0311S3_2020 9 n N/A +Sample2 Denmark_SSI-03_2020 9 n N/A +Sample2 Netherlands_Gelderland_2_2020 9 n N/A +Sample2 Georgia_Tb-273_2020 9 n N/A +Sample2 Belgium_SH-03014_2020 9 n N/A +Sample2 node_60 9 n N/A +Sample2 node_62 9 n N/A +Sample2 Belgium_VAG-03013_2020 9 n N/A +Sample2 node_64 9 n N/A +Sample2 node_65 9 n N/A +Sample2 node_66 9 n N/A +Sample2 node_67 9 n N/A +Sample2 node_68 9 n N/A +Sample2 node_80 9 n N/A +Sample2 node_81 9 n N/A +Sample2 node_82 9 n N/A +Sample2 node_25_condensed_15_leaves 9 n N/A +Sample2 Netherlands_Utrecht_16_2020 10 n N/A +Sample2 Netherlands_Utrecht_17_2020 10 n N/A +Sample2 node_11 10 n N/A +Sample2 node_12 10 n N/A 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node_33_condensed_5_leaves 10 n N/A +Sample2 Nigeria_Lagos01_2020 12 n N/A +Sample2 Netherlands_Delft_1363424_2020 12 n N/A +Sample2 Denmark_SSI-01_2020 12 n N/A +Sample2 England_200990723_2020 12 n N/A +Sample2 Switzerland_TI2045_2020 12 n N/A +Sample2 Switzerland_1000477377_2020 12 n N/A +Sample2 Denmark_SSI-05_2020 12 n N/A +Sample2 Chile_Santiago-2_2020 12 n N/A +Sample2 Brazil_SPBR-14_2020 12 n N/A +Sample2 Finland_FIN-318_2020 12 n N/A +Sample2 Netherlands_Limburg_5_2020 12 n N/A +Sample2 Belgium_DBA-03032_2020 12 n N/A +Sample2 Switzerland_SZ1417_2020 12 n N/A +Sample2 Belgium_GMH-03022_2020 12 n N/A +Sample2 Netherlands_Utrecht_14_2020 12 n N/A +Sample2 Netherlands_Utrecht_1_2020 12 n N/A +Sample2 Finland_FIN03032020C_2020 12 n N/A +Sample2 Netherlands_Berlicum_1363564_2020 12 n N/A +Sample2 node_69 12 n N/A +Sample2 node_70 12 n N/A +Sample2 node_71 12 n N/A +Sample2 node_72 12 n N/A +Sample2 node_73 12 n N/A +Sample2 node_74 12 n N/A +Sample2 node_75 12 n N/A +Sample2 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14 n N/A +Sample2 node_41_condensed_2_leaves 13 n N/A +Sample2 node_42_condensed_2_leaves 13 n N/A +Sample2 Switzerland_1000477797_2020 13 n N/A +Sample2 Brazil_BA-312_2020 13 n N/A +Sample2 node_43_condensed_3_leaves 13 n N/A +Sample2 Finland_FIN-313_2020 14 n N/A +Sample2 Netherlands_Utrecht_15_2020 14 n N/A +Sample2 Switzerland_GE1422_2020 13 n N/A +Sample2 Netherlands_Diemen_1363454_2020 13 n N/A +Sample2 node_44_condensed_3_leaves 13 n N/A +Sample2 Switzerland_BE6651_2020 13 n N/A +Sample2 Netherlands_NoordHolland_2_2020 13 n N/A +Sample2 node_45_condensed_6_leaves 13 n N/A +Sample2 Switzerland_1000477757_2020 13 n N/A +Sample2 Brazil_SPBR-12_2020 13 n N/A +Sample2 Germany_Baden-Wuerttemberg-1_2020 13 n N/A +Sample2 node_46_condensed_16_leaves 13 n N/A +Sample2 Belgium_UMF-03025_2020 13 n N/A +Sample2 node_79 13 n N/A +Sample2 France_B2351_2020 12 n N/A +Sample2 France_B2344_2020 12 n N/A +Sample2 France_B2349_2020 12 n N/A +Sample2 France_IDF2256_2020 12 n N/A +Sample2 France_HF1871_2020 12 n N/A +Sample2 node_47_condensed_2_leaves 14 n N/A +Sample3 node_1 4 n N/A +Sample3 node_2 5 n N/A +Sample3 Shanghai_SH0007_2020 5 n N/A +Sample3 Hangzhou_ZJU-07_2020 5 n N/A +Sample3 Wuhan_IPBCAMS-WH-03_2019 5 n N/A +Sample3 Wuhan_WH01_2019 5 n N/A +Sample3 Wuhan_WIV07_2019 5 n N/A +Sample3 Shanghai_SH0093_2020 5 n N/A +Sample3 Wuhan_HBCDC-HB-01_2019 5 n N/A +Sample3 Wuhan_IPBCAMS-WH-01_2019 5 n N/A +Sample3 Wuhan_IVDC-HB-04_2020 5 n N/A +Sample3 Wuhan_IVDC-HB-05_2019 5 n N/A +Sample3 Wuhan_WIV05_2019 5 n N/A +Sample3 Sweden_01_2020 5 n N/A +Sample3 Taiwan_2_2020 5 n N/A +Sample3 USA_CA2_2020 5 n N/A +Sample3 Shanghai_SH0040_2020 5 n N/A +Sample3 Singapore_7_2020 5 n N/A +Sample3 Australia_VIC02_2020 5 n N/A +Sample3 France_IDF0515_2020 5 n N/A +Sample3 Hangzhou_ZJU-01_2020 5 n N/A +Sample3 Shanghai_SH0037_2020 5 n N/A +Sample3 Nepal_61_2020 5 n N/A +Sample3 China_WH-09_2020 5 n N/A +Sample3 Jiangxi_IVDC-JX-002_2020 5 n N/A +Sample3 Zhejiang_WZ-01_2020 5 n N/A +Sample3 Japan_KY-V-029_2020 5 n N/A +Sample3 Hangzhou_ZJU-03_2020 5 n N/A +Sample3 Netherlands_Utrecht_12_2020 5 n N/A +Sample3 Singapore_1_2020 5 n N/A +Sample3 Taiwan_NTU02_2020 5 n N/A +Sample3 England_SHEF-BFD36_2020 5 n N/A +Sample3 France_IDF0626_2020 5 n N/A +Sample3 Malaysia_MKAK-CL-2020-7554_2020 5 n N/A +Sample3 Cambodia_0012_2020 5 n N/A +Sample3 node_17 5 n N/A +Sample3 node_18 5 n N/A +Sample3 node_19 2 y G1440A,G2891A +Sample3 node_22 5 n N/A +Sample3 node_23 5 n N/A +Sample3 node_24 5 n N/A +Sample3 node_27 5 n N/A +Sample3 node_28 5 n N/A +Sample3 node_37 5 n N/A +Sample3 node_38 5 n N/A +Sample3 node_39 5 n N/A +Sample3 node_40 5 n N/A +Sample3 node_42 5 n N/A +Sample3 node_43 5 n N/A +Sample3 node_44 5 n N/A +Sample3 node_47 5 n N/A +Sample3 node_50 5 n N/A +Sample3 node_55 5 n N/A +Sample3 node_58 5 n N/A +Sample3 node_1_condensed_27_leaves 5 n N/A +Sample3 Wuhan_HBCDC-HB-06_2020 7 n N/A +Sample3 Wuhan_HBCDC-HB-02_2020 7 n N/A +Sample3 Wuhan_HBCDC-HB-04_2020 7 n N/A 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N/A +Sample3 Jiangsu_JS01_2020 6 n N/A +Sample3 Shanghai_SH0031_2020 6 n N/A +Sample3 Australia_NSW02_2020 6 n N/A +Sample3 node_25 6 n N/A +Sample3 India_1-27_2020 6 n N/A +Sample3 Shanghai_SH0011_2020 6 n N/A +Sample3 Fujian_13_2020 6 n N/A +Sample3 Singapore_11_2020 6 n N/A +Sample3 USA_WI1_2020 6 n N/A +Sample3 Wuhan_HBCDC-HB-05_2020 9 n N/A +Sample3 Shandong_IVDC-SD-001_2020 9 n N/A +Sample3 England_200960041_2020 9 n N/A +Sample3 Australia_NSW05_2020 9 n N/A +Sample3 node_29 9 n N/A +Sample3 node_31 9 n N/A +Sample3 node_32 9 n N/A +Sample3 Kuwait_KU17_2020 9 n N/A +Sample3 node_33 9 n N/A +Sample3 node_34 9 n N/A +Sample3 node_35 9 n N/A +Sample3 node_7_condensed_3_leaves 7 n N/A +Sample3 Jiangsu_JS02_2020 6 n N/A +Sample3 Shanghai_SH0008_2020 6 n N/A +Sample3 USA_CA5_2020 6 n N/A +Sample3 Wuhan_WIV02_2019 6 n N/A +Sample3 node_8_condensed_2_leaves 6 n N/A +Sample3 Singapore_8_2020 6 n N/A +Sample3 node_41 6 n N/A +Sample3 node_9_condensed_2_leaves 6 n N/A +Sample3 Japan_Hu_DP_Kng_19-027_2020 6 n N/A +Sample3 node_10_condensed_3_leaves 6 n N/A +Sample3 Hangzhou_ZJU-09_2020 6 n N/A +Sample3 Australia_VIC01_2020 6 n N/A +Sample3 USA_MA1_2020 6 n N/A +Sample3 node_45 6 n N/A +Sample3 node_48 7 n N/A +Sample3 node_49 7 n N/A +Sample3 Italy_SPL1_2020 7 n N/A +Sample3 England_20102000106_2020 8 n N/A +Sample3 node_51 8 n N/A +Sample3 node_53 8 n N/A +Sample3 England_200960515_2020 8 n N/A +Sample3 node_54 8 n N/A +Sample3 Netherlands_Utrecht_19_2020 6 n N/A +Sample3 Netherlands_Limburg_6_2020 6 n N/A +Sample3 Netherlands_Naarden_1364774_2020 6 n N/A +Sample3 node_56 6 n N/A +Sample3 node_57 6 n N/A +Sample3 Shanghai_SH0086_2020 8 n N/A +Sample3 node_59 8 n N/A +Sample3 node_11_condensed_3_leaves 8 n N/A +Sample3 France_GE1583_2020 12 n N/A +Sample3 Georgia_Tb-390_2020 12 n N/A +Sample3 Spain_Valencia6_2020 12 n N/A +Sample3 Spain_CastillayLeon201437_2020 12 n N/A +Sample3 node_12_condensed_6_leaves 12 n N/A +Sample3 Sichuan_IVDC-SC-001_2020 10 n N/A 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+Sample3 Beijing_233_2020 9 n N/A +Sample3 node_18_condensed_3_leaves 9 n N/A +Sample3 Germany_NRW-04_2020 5 n N/A +Sample3 Germany_NRW-07_2020 5 n N/A +Sample3 node_21 5 n N/A +Sample3 Hangzhou_ZJU-06_2020 7 n N/A +Sample3 node_26 7 n N/A +Sample3 Georgia_Tb-82_2020 11 n N/A +Sample3 Australia_NSW09_2020 11 n N/A +Sample3 node_30 11 n N/A +Sample3 Kuwait_KU18_2020 11 n N/A +Sample3 Kuwait_KU12_2020 11 n N/A +Sample3 Australia_NSW06_2020 11 n N/A +Sample3 node_19_condensed_2_leaves 11 n N/A +Sample3 Taiwan_CGMH-CGU-04_2020 12 n N/A +Sample3 node_20_condensed_2_leaves 12 n N/A +Sample3 Canada_BC_17397_2020 10 n N/A +Sample3 Canada_BC_13297_2020 10 n N/A +Sample3 Australia_QLD09_2020 10 n N/A +Sample3 Australia_NSW07_2020 10 n N/A +Sample3 USA_NY1-PV08001_2020 10 n N/A +Sample3 Canada_BC_37_0-2_2020 10 n N/A +Sample3 Canada_BC_69243_2020 10 n N/A +Sample3 node_36 10 n N/A +Sample3 node_21_condensed_3_leaves 7 n N/A +Sample3 Shanghai_SH0058_2020 7 n N/A +Sample3 node_46 7 n N/A +Sample3 node_22_condensed_2_leaves 7 n N/A +Sample3 France_B2334_2020 9 n N/A +Sample3 France_B2340_2020 9 n N/A +Sample3 Georgia_Tb-468_2020 8 n N/A +Sample3 Georgia_Tb-537_2020 8 n N/A +Sample3 Georgia_Tb-54_2020 8 n N/A +Sample3 England_09c_2020 10 n N/A +Sample3 Brazil_ES-225_2020 10 n N/A +Sample3 England_20100001406_2020 10 n N/A +Sample3 node_52 10 n N/A +Sample3 Brazil_SPBR-10_2020 7 n N/A +Sample3 Switzerland_1000477102_2020 9 n N/A +Sample3 Brazil_SPBR-02_2020 9 n N/A +Sample3 England_200990006_2020 9 n N/A +Sample3 Netherlands_Utrecht_18_2020 9 n N/A +Sample3 node_23_condensed_3_leaves 9 n N/A +Sample3 node_24_condensed_2_leaves 7 n N/A +Sample3 Netherlands_Oss_1363500_2020 7 n N/A +Sample3 Netherlands_Tilburg_1363354_2020 7 n N/A +Sample3 Finland_FIN-25_2020 9 n N/A +Sample3 Belgium_DB-03023_2020 9 n N/A +Sample3 Denmark_SSI-102_2020 9 n N/A +Sample3 Denmark_SSI-02_2020 9 n N/A +Sample3 Belgium_BM-03012_2020 9 n N/A +Sample3 England_20100022706_2020 9 n N/A +Sample3 Denmark_SSI-04_2020 9 n N/A +Sample3 Taiwan_NTU03_2020 9 n N/A +Sample3 Finland_FIN03032020A_2020 9 n N/A +Sample3 Switzerland_GE4984_2020 9 n N/A +Sample3 Switzerland_AG0361_2020 9 n N/A +Sample3 Finland_FIN-266_2020 9 n N/A +Sample3 Luxembourg_Lux1_2020 9 n N/A +Sample3 Japan_SMU-0311S3_2020 9 n N/A +Sample3 Denmark_SSI-03_2020 9 n N/A +Sample3 Netherlands_Gelderland_2_2020 9 n N/A +Sample3 Georgia_Tb-273_2020 9 n N/A +Sample3 Belgium_SH-03014_2020 9 n N/A +Sample3 node_60 9 n N/A +Sample3 node_62 9 n N/A +Sample3 Belgium_VAG-03013_2020 9 n N/A +Sample3 node_64 9 n N/A +Sample3 node_65 9 n N/A +Sample3 node_66 9 n N/A +Sample3 node_67 9 n N/A +Sample3 node_68 9 n N/A +Sample3 node_80 9 n N/A +Sample3 node_81 9 n N/A +Sample3 node_82 9 n N/A +Sample3 node_25_condensed_15_leaves 9 n N/A +Sample3 Netherlands_Utrecht_16_2020 10 n N/A +Sample3 Netherlands_Utrecht_17_2020 10 n N/A +Sample3 node_11 10 n N/A +Sample3 node_12 10 n N/A +Sample3 Japan_TY-WK-012_2020 9 n N/A +Sample3 node_26_condensed_2_leaves 9 n N/A +Sample3 node_27_condensed_3_leaves 7 n N/A +Sample3 Shanghai_SH0085_2020 9 n N/A +Sample3 Shanghai_SH0094_2020 9 n N/A +Sample3 Canada_BC_25211_2020 12 n N/A +Sample3 Kuwait_KU09_2020 12 n N/A +Sample3 England_200990002_2020 12 n N/A +Sample3 Germany_BavPat2_2020 12 n N/A +Sample3 node_28_condensed_2_leaves 8 n N/A +Sample3 node_29_condensed_3_leaves 11 n N/A +Sample3 node_61 10 n N/A +Sample3 node_30_condensed_4_leaves 10 n N/A +Sample3 France_HF2174_2020 11 n N/A +Sample3 France_GE1977_2020 11 n N/A +Sample3 France_HF1684_2020 11 n N/A +Sample3 node_63 11 n N/A +Sample3 Netherlands_Utrecht_1363564_2020 13 n N/A +Sample3 node_31_condensed_2_leaves 13 n N/A +Sample3 England_20099107406_2020 10 n N/A +Sample3 Georgia_Tb_2020 10 n N/A +Sample3 France_BFC2094_2020 10 n N/A +Sample3 France_BFC2147_2020 10 n N/A +Sample3 node_32_condensed_4_leaves 10 n N/A +Sample3 Hungary_mbl1_2020 10 n N/A +Sample3 node_33_condensed_5_leaves 10 n N/A +Sample3 Nigeria_Lagos01_2020 12 n N/A +Sample3 Netherlands_Delft_1363424_2020 12 n N/A +Sample3 Denmark_SSI-01_2020 12 n N/A +Sample3 England_200990723_2020 12 n N/A +Sample3 Switzerland_TI2045_2020 12 n N/A +Sample3 Switzerland_1000477377_2020 12 n N/A +Sample3 Denmark_SSI-05_2020 12 n N/A +Sample3 Chile_Santiago-2_2020 12 n N/A +Sample3 Brazil_SPBR-14_2020 12 n N/A +Sample3 Finland_FIN-318_2020 12 n N/A +Sample3 Netherlands_Limburg_5_2020 12 n N/A +Sample3 Belgium_DBA-03032_2020 12 n N/A +Sample3 Switzerland_SZ1417_2020 12 n N/A +Sample3 Belgium_GMH-03022_2020 12 n N/A +Sample3 Netherlands_Utrecht_14_2020 12 n N/A +Sample3 Netherlands_Utrecht_1_2020 12 n N/A +Sample3 Finland_FIN03032020C_2020 12 n N/A +Sample3 Netherlands_Berlicum_1363564_2020 12 n N/A +Sample3 node_69 12 n N/A +Sample3 node_70 12 n N/A +Sample3 node_71 12 n N/A +Sample3 node_72 12 n N/A +Sample3 node_73 12 n N/A +Sample3 node_74 12 n N/A +Sample3 node_75 12 n N/A +Sample3 Belgium_BC-03016_2020 12 n N/A +Sample3 node_76 12 n N/A +Sample3 node_77 12 n N/A +Sample3 node_78 12 n N/A +Sample3 node_34_condensed_7_leaves 12 n N/A +Sample3 Netherlands_NoordHolland_3_2020 10 n N/A +Sample3 Netherlands_Flevoland_1_2020 10 n N/A +Sample3 NetherlandsL_Houten_1363498_2020 10 n N/A +Sample3 Italy_UniSR1_2020 10 n N/A +Sample3 France_N1620_2020 10 n N/A +Sample3 node_35_condensed_3_leaves 10 n N/A +Sample3 Georgia_Tb-673_2020 11 n N/A +Sample3 France_B2330_2020 11 n N/A +Sample3 France_PL1643_2020 11 n N/A +Sample3 France_HF1988_2020 11 n N/A +Sample3 France_B2348_2020 11 n N/A +Sample3 node_83 11 n N/A +Sample3 node_84 11 n N/A +Sample3 Netherlands_Haarlem_1363688_2020 11 n N/A +Sample3 node_36_condensed_6_leaves 11 n N/A +Sample3 USA_CA-CDPH-UC7_2020 13 n N/A +Sample3 USA_CA-CDPH-UC9_2020 13 n N/A +Sample3 node_37_condensed_2_leaves 12 n N/A +Sample3 node_38_condensed_2_leaves 12 n N/A +Sample3 node_39_condensed_2_leaves 12 n N/A +Sample3 node_40_condensed_2_leaves 14 n N/A +Sample3 node_41_condensed_2_leaves 13 n N/A 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14 n N/A +Sample4 node_1 5 n N/A +Sample4 node_2 6 n N/A +Sample4 Shanghai_SH0007_2020 6 n N/A +Sample4 Hangzhou_ZJU-07_2020 6 n N/A +Sample4 Wuhan_IPBCAMS-WH-03_2019 6 n N/A +Sample4 Wuhan_WH01_2019 6 n N/A +Sample4 Wuhan_WIV07_2019 6 n N/A +Sample4 Shanghai_SH0093_2020 6 n N/A +Sample4 Wuhan_HBCDC-HB-01_2019 6 n N/A +Sample4 Wuhan_IPBCAMS-WH-01_2019 6 n N/A +Sample4 Wuhan_IVDC-HB-04_2020 6 n N/A +Sample4 Wuhan_IVDC-HB-05_2019 6 n N/A +Sample4 Wuhan_WIV05_2019 6 n N/A +Sample4 Sweden_01_2020 6 n N/A +Sample4 Taiwan_2_2020 6 n N/A +Sample4 USA_CA2_2020 6 n N/A +Sample4 Shanghai_SH0040_2020 6 n N/A +Sample4 Singapore_7_2020 6 n N/A +Sample4 Australia_VIC02_2020 6 n N/A +Sample4 France_IDF0515_2020 6 n N/A +Sample4 Hangzhou_ZJU-01_2020 6 n N/A +Sample4 Shanghai_SH0037_2020 6 n N/A +Sample4 Nepal_61_2020 6 n N/A +Sample4 China_WH-09_2020 6 n N/A +Sample4 Jiangxi_IVDC-JX-002_2020 6 n N/A +Sample4 Zhejiang_WZ-01_2020 6 n N/A +Sample4 Japan_KY-V-029_2020 6 n N/A +Sample4 Hangzhou_ZJU-03_2020 6 n N/A +Sample4 Netherlands_Utrecht_12_2020 6 n N/A +Sample4 Singapore_1_2020 6 n N/A +Sample4 Taiwan_NTU02_2020 6 n N/A +Sample4 England_SHEF-BFD36_2020 6 n N/A +Sample4 France_IDF0626_2020 6 n N/A +Sample4 Malaysia_MKAK-CL-2020-7554_2020 6 n N/A +Sample4 Cambodia_0012_2020 6 n N/A +Sample4 node_17 6 n N/A +Sample4 node_18 6 n N/A +Sample4 node_19 3 y G1440A,G2891A,G14948A +Sample4 node_22 6 n N/A +Sample4 node_23 6 n N/A +Sample4 node_24 6 n N/A +Sample4 node_27 6 n N/A +Sample4 node_28 6 n N/A +Sample4 node_37 6 n N/A +Sample4 node_38 6 n N/A +Sample4 node_39 6 n N/A +Sample4 node_40 6 n N/A +Sample4 node_42 6 n N/A +Sample4 node_43 6 n N/A +Sample4 node_44 6 n N/A +Sample4 node_47 6 n N/A +Sample4 node_50 6 n N/A +Sample4 node_55 6 n N/A +Sample4 node_58 6 n N/A +Sample4 node_1_condensed_27_leaves 6 n N/A +Sample4 Wuhan_HBCDC-HB-06_2020 8 n N/A +Sample4 Wuhan_HBCDC-HB-02_2020 8 n N/A +Sample4 Wuhan_HBCDC-HB-04_2020 8 n N/A +Sample4 Shanghai_SH0075_2020 8 n N/A +Sample4 Shanghai_SH0010_2020 8 n N/A +Sample4 Tianmen_HBCDC-HB-07_2020 8 n N/A +Sample4 Shanghai_SH0041_2020 8 n N/A +Sample4 India_1-31_2020 8 n N/A +Sample4 Shanghai_SH0009_2020 8 n N/A +Sample4 Malaysia_MKAK-CL-2020-5096_2020 8 n N/A +Sample4 node_3 8 n N/A +Sample4 node_4 8 n N/A +Sample4 node_5 8 n N/A +Sample4 node_7 8 n N/A +Sample4 node_8 8 n N/A +Sample4 England_02_2020 8 n N/A +Sample4 node_9 8 n N/A +Sample4 node_13 8 n N/A +Sample4 node_15 8 n N/A +Sample4 node_16 8 n N/A +Sample4 node_2_condensed_10_leaves 8 n N/A +Sample4 USA_CA-CDPH-UC2_2020 7 n N/A +Sample4 USA_CA-CDPH-UC3_2020 7 n N/A +Sample4 node_3_condensed_2_leaves 7 n N/A +Sample4 node_4_condensed_2_leaves 7 n N/A +Sample4 Germany_NRW-10_2020 4 n N/A +Sample4 Germany_NRW-09_2020 4 n N/A +Sample4 Poland_PL_P1_2020 4 n N/A +Sample4 node_20 4 n N/A +Sample4 node_5_condensed_5_leaves 4 n N/A +Sample4 Malaysia_MKAK-CL-2020-5045_2020 7 n N/A +Sample4 node_6_condensed_3_leaves 7 n N/A +Sample4 Jiangsu_JS01_2020 7 n N/A +Sample4 Shanghai_SH0031_2020 7 n N/A +Sample4 Australia_NSW02_2020 7 n N/A +Sample4 node_25 7 n N/A +Sample4 India_1-27_2020 7 n N/A +Sample4 Shanghai_SH0011_2020 7 n N/A +Sample4 Fujian_13_2020 7 n N/A +Sample4 Singapore_11_2020 7 n N/A +Sample4 USA_WI1_2020 7 n N/A +Sample4 Wuhan_HBCDC-HB-05_2020 10 n N/A +Sample4 Shandong_IVDC-SD-001_2020 10 n N/A +Sample4 England_200960041_2020 10 n N/A +Sample4 Australia_NSW05_2020 10 n N/A +Sample4 node_29 10 n N/A +Sample4 node_31 10 n N/A +Sample4 node_32 10 n N/A +Sample4 Kuwait_KU17_2020 10 n N/A +Sample4 node_33 10 n N/A +Sample4 node_34 10 n N/A +Sample4 node_35 10 n N/A +Sample4 node_7_condensed_3_leaves 8 n N/A +Sample4 Jiangsu_JS02_2020 7 n N/A +Sample4 Shanghai_SH0008_2020 7 n N/A +Sample4 USA_CA5_2020 7 n N/A +Sample4 Wuhan_WIV02_2019 7 n N/A +Sample4 node_8_condensed_2_leaves 7 n N/A +Sample4 Singapore_8_2020 7 n N/A +Sample4 node_41 7 n N/A +Sample4 node_9_condensed_2_leaves 7 n N/A +Sample4 Japan_Hu_DP_Kng_19-027_2020 7 n N/A +Sample4 node_10_condensed_3_leaves 7 n N/A +Sample4 Hangzhou_ZJU-09_2020 7 n N/A +Sample4 Australia_VIC01_2020 7 n N/A +Sample4 USA_MA1_2020 7 n N/A +Sample4 node_45 7 n N/A +Sample4 node_48 8 n N/A +Sample4 node_49 8 n N/A +Sample4 Italy_SPL1_2020 8 n N/A +Sample4 England_20102000106_2020 9 n N/A +Sample4 node_51 9 n N/A +Sample4 node_53 9 n N/A +Sample4 England_200960515_2020 9 n N/A +Sample4 node_54 9 n N/A +Sample4 Netherlands_Utrecht_19_2020 7 n N/A +Sample4 Netherlands_Limburg_6_2020 7 n N/A +Sample4 Netherlands_Naarden_1364774_2020 7 n N/A +Sample4 node_56 7 n N/A +Sample4 node_57 7 n N/A +Sample4 Shanghai_SH0086_2020 9 n N/A +Sample4 node_59 9 n N/A +Sample4 node_11_condensed_3_leaves 9 n N/A +Sample4 France_GE1583_2020 13 n N/A +Sample4 Georgia_Tb-390_2020 13 n N/A +Sample4 Spain_Valencia6_2020 13 n N/A +Sample4 Spain_CastillayLeon201437_2020 13 n N/A +Sample4 node_12_condensed_6_leaves 13 n N/A +Sample4 Sichuan_IVDC-SC-001_2020 11 n N/A +Sample4 USA_CA1_2020 11 n N/A +Sample4 USA_IL2_2020 11 n N/A +Sample4 Vietnam_CM99_2020 11 n N/A +Sample4 node_13_condensed_3_leaves 11 n N/A +Sample4 Shanghai_SH0035_2020 10 n N/A +Sample4 Australia_QLD02_2020 10 n N/A +Sample4 Australia_QLD03_2020 10 n N/A +Sample4 Australia_VIC07_2020 10 n N/A +Sample4 node_6 10 n N/A +Sample4 node_14_condensed_6_leaves 10 n N/A +Sample4 Shandong_LY003_2020 9 n N/A +Sample4 Shandong_LY005_2020 9 n N/A +Sample4 node_15_condensed_3_leaves 9 n N/A +Sample4 node_16_condensed_2_leaves 12 n N/A +Sample4 Chongqing_YC01_2020 9 n N/A +Sample4 node_10 9 n N/A +Sample4 Malaysia_MKAK-CL-2020-6430_2020 9 n N/A +Sample4 node_17_condensed_3_leaves 9 n N/A +Sample4 Shanghai_SH0059_2020 9 n N/A +Sample4 USA_TX1_2020 9 n N/A +Sample4 node_14 9 n N/A +Sample4 Shanghai_SH0004_2020 9 n N/A +Sample4 Germany_BavPat3_2020 9 n N/A +Sample4 Shanghai_SH0005_2020 9 n N/A +Sample4 Yunnan_IVDC-YN-003_2020 9 n N/A +Sample4 USA_AZ1_2020 9 n N/A +Sample4 Anhui_SZ005_2020 7 n N/A +Sample4 Beijing_233_2020 10 n N/A 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Taiwan_NTU03_2020 10 n N/A +Sample4 Finland_FIN03032020A_2020 10 n N/A +Sample4 Switzerland_GE4984_2020 10 n N/A +Sample4 Switzerland_AG0361_2020 10 n N/A +Sample4 Finland_FIN-266_2020 10 n N/A +Sample4 Luxembourg_Lux1_2020 10 n N/A +Sample4 Japan_SMU-0311S3_2020 10 n N/A +Sample4 Denmark_SSI-03_2020 10 n N/A +Sample4 Netherlands_Gelderland_2_2020 10 n N/A +Sample4 Georgia_Tb-273_2020 10 n N/A +Sample4 Belgium_SH-03014_2020 10 n N/A +Sample4 node_60 10 n N/A +Sample4 node_62 10 n N/A +Sample4 Belgium_VAG-03013_2020 10 n N/A +Sample4 node_64 10 n N/A +Sample4 node_65 10 n N/A +Sample4 node_66 10 n N/A +Sample4 node_67 10 n N/A +Sample4 node_68 10 n N/A +Sample4 node_80 10 n N/A +Sample4 node_81 10 n N/A +Sample4 node_82 10 n N/A +Sample4 node_25_condensed_15_leaves 10 n N/A +Sample4 Netherlands_Utrecht_16_2020 11 n N/A +Sample4 Netherlands_Utrecht_17_2020 11 n N/A +Sample4 node_11 11 n N/A +Sample4 node_12 11 n N/A +Sample4 Japan_TY-WK-012_2020 10 n N/A +Sample4 node_26_condensed_2_leaves 10 n N/A +Sample4 node_27_condensed_3_leaves 8 n N/A +Sample4 Shanghai_SH0085_2020 10 n N/A +Sample4 Shanghai_SH0094_2020 10 n N/A +Sample4 Canada_BC_25211_2020 13 n N/A +Sample4 Kuwait_KU09_2020 13 n N/A +Sample4 England_200990002_2020 13 n N/A +Sample4 Germany_BavPat2_2020 13 n N/A +Sample4 node_28_condensed_2_leaves 9 n N/A +Sample4 node_29_condensed_3_leaves 12 n N/A +Sample4 node_61 11 n N/A +Sample4 node_30_condensed_4_leaves 11 n N/A +Sample4 France_HF2174_2020 12 n N/A +Sample4 France_GE1977_2020 12 n N/A +Sample4 France_HF1684_2020 12 n N/A +Sample4 node_63 12 n N/A +Sample4 Netherlands_Utrecht_1363564_2020 14 n N/A +Sample4 node_31_condensed_2_leaves 14 n N/A +Sample4 England_20099107406_2020 11 n N/A +Sample4 Georgia_Tb_2020 11 n N/A +Sample4 France_BFC2094_2020 11 n N/A +Sample4 France_BFC2147_2020 11 n N/A +Sample4 node_32_condensed_4_leaves 11 n N/A +Sample4 Hungary_mbl1_2020 11 n N/A +Sample4 node_33_condensed_5_leaves 11 n N/A +Sample4 Nigeria_Lagos01_2020 13 n N/A +Sample4 Netherlands_Delft_1363424_2020 13 n N/A +Sample4 Denmark_SSI-01_2020 13 n N/A +Sample4 England_200990723_2020 13 n N/A +Sample4 Switzerland_TI2045_2020 13 n N/A +Sample4 Switzerland_1000477377_2020 13 n N/A +Sample4 Denmark_SSI-05_2020 13 n N/A +Sample4 Chile_Santiago-2_2020 13 n N/A +Sample4 Brazil_SPBR-14_2020 13 n N/A +Sample4 Finland_FIN-318_2020 13 n N/A +Sample4 Netherlands_Limburg_5_2020 13 n N/A +Sample4 Belgium_DBA-03032_2020 13 n N/A +Sample4 Switzerland_SZ1417_2020 13 n N/A +Sample4 Belgium_GMH-03022_2020 13 n N/A +Sample4 Netherlands_Utrecht_14_2020 13 n N/A +Sample4 Netherlands_Utrecht_1_2020 13 n N/A +Sample4 Finland_FIN03032020C_2020 13 n N/A +Sample4 Netherlands_Berlicum_1363564_2020 13 n N/A +Sample4 node_69 13 n N/A +Sample4 node_70 13 n N/A +Sample4 node_71 13 n N/A +Sample4 node_72 13 n N/A +Sample4 node_73 13 n N/A +Sample4 node_74 13 n N/A +Sample4 node_75 13 n N/A +Sample4 Belgium_BC-03016_2020 13 n N/A +Sample4 node_76 13 n N/A +Sample4 node_77 13 n N/A +Sample4 node_78 13 n N/A +Sample4 node_34_condensed_7_leaves 13 n N/A +Sample4 Netherlands_NoordHolland_3_2020 11 n N/A +Sample4 Netherlands_Flevoland_1_2020 11 n N/A +Sample4 NetherlandsL_Houten_1363498_2020 11 n N/A +Sample4 Italy_UniSR1_2020 11 n N/A +Sample4 France_N1620_2020 11 n N/A +Sample4 node_35_condensed_3_leaves 11 n N/A +Sample4 Georgia_Tb-673_2020 12 n N/A +Sample4 France_B2330_2020 12 n N/A +Sample4 France_PL1643_2020 12 n N/A +Sample4 France_HF1988_2020 12 n N/A +Sample4 France_B2348_2020 12 n N/A +Sample4 node_83 12 n N/A +Sample4 node_84 12 n N/A +Sample4 Netherlands_Haarlem_1363688_2020 12 n N/A +Sample4 node_36_condensed_6_leaves 12 n N/A +Sample4 USA_CA-CDPH-UC7_2020 14 n N/A +Sample4 USA_CA-CDPH-UC9_2020 14 n N/A +Sample4 node_37_condensed_2_leaves 13 n N/A +Sample4 node_38_condensed_2_leaves 13 n N/A +Sample4 node_39_condensed_2_leaves 13 n N/A +Sample4 node_40_condensed_2_leaves 15 n N/A +Sample4 node_41_condensed_2_leaves 14 n N/A 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15 n N/A +Sample5 node_1 5 n N/A +Sample5 node_2 6 n N/A +Sample5 Shanghai_SH0007_2020 6 n N/A +Sample5 Hangzhou_ZJU-07_2020 6 n N/A +Sample5 Wuhan_IPBCAMS-WH-03_2019 6 n N/A +Sample5 Wuhan_WH01_2019 6 n N/A +Sample5 Wuhan_WIV07_2019 6 n N/A +Sample5 Shanghai_SH0093_2020 6 n N/A +Sample5 Wuhan_HBCDC-HB-01_2019 6 n N/A +Sample5 Wuhan_IPBCAMS-WH-01_2019 6 n N/A +Sample5 Wuhan_IVDC-HB-04_2020 6 n N/A +Sample5 Wuhan_IVDC-HB-05_2019 6 n N/A +Sample5 Wuhan_WIV05_2019 6 n N/A +Sample5 Sweden_01_2020 6 n N/A +Sample5 Taiwan_2_2020 6 n N/A +Sample5 USA_CA2_2020 6 n N/A +Sample5 Shanghai_SH0040_2020 6 n N/A +Sample5 Singapore_7_2020 6 n N/A +Sample5 Australia_VIC02_2020 6 n N/A +Sample5 France_IDF0515_2020 6 n N/A +Sample5 Hangzhou_ZJU-01_2020 6 n N/A +Sample5 Shanghai_SH0037_2020 6 n N/A +Sample5 Nepal_61_2020 6 n N/A +Sample5 China_WH-09_2020 6 n N/A +Sample5 Jiangxi_IVDC-JX-002_2020 6 n N/A +Sample5 Zhejiang_WZ-01_2020 6 n N/A +Sample5 Japan_KY-V-029_2020 6 n N/A +Sample5 Hangzhou_ZJU-03_2020 6 n N/A +Sample5 Netherlands_Utrecht_12_2020 6 n N/A +Sample5 Singapore_1_2020 6 n N/A +Sample5 Taiwan_NTU02_2020 6 n N/A +Sample5 England_SHEF-BFD36_2020 6 n N/A +Sample5 France_IDF0626_2020 6 n N/A +Sample5 Malaysia_MKAK-CL-2020-7554_2020 6 n N/A +Sample5 Cambodia_0012_2020 6 n N/A +Sample5 node_17 6 n N/A +Sample5 node_18 6 n N/A +Sample5 node_19 3 y G1440A,G2891A,G14948A +Sample5 node_22 6 n N/A +Sample5 node_23 6 n N/A +Sample5 node_24 6 n N/A +Sample5 node_27 6 n N/A +Sample5 node_28 6 n N/A +Sample5 node_37 6 n N/A +Sample5 node_38 6 n N/A +Sample5 node_39 6 n N/A +Sample5 node_40 6 n N/A +Sample5 node_42 6 n N/A +Sample5 node_43 6 n N/A +Sample5 node_44 6 n N/A +Sample5 node_47 6 n N/A +Sample5 node_50 6 n N/A +Sample5 node_55 6 n N/A +Sample5 node_58 6 n N/A +Sample5 node_1_condensed_27_leaves 6 n N/A +Sample5 Wuhan_HBCDC-HB-06_2020 8 n N/A +Sample5 Wuhan_HBCDC-HB-02_2020 8 n N/A +Sample5 Wuhan_HBCDC-HB-04_2020 8 n N/A +Sample5 Shanghai_SH0075_2020 8 n N/A +Sample5 Shanghai_SH0010_2020 8 n N/A +Sample5 Tianmen_HBCDC-HB-07_2020 8 n N/A +Sample5 Shanghai_SH0041_2020 8 n N/A +Sample5 India_1-31_2020 8 n N/A +Sample5 Shanghai_SH0009_2020 8 n N/A +Sample5 Malaysia_MKAK-CL-2020-5096_2020 8 n N/A +Sample5 node_3 8 n N/A +Sample5 node_4 8 n N/A +Sample5 node_5 8 n N/A +Sample5 node_7 8 n N/A +Sample5 node_8 8 n N/A +Sample5 England_02_2020 8 n N/A +Sample5 node_9 8 n N/A +Sample5 node_13 8 n N/A +Sample5 node_15 8 n N/A +Sample5 node_16 8 n N/A +Sample5 node_2_condensed_10_leaves 8 n N/A +Sample5 USA_CA-CDPH-UC2_2020 7 n N/A +Sample5 USA_CA-CDPH-UC3_2020 7 n N/A +Sample5 node_3_condensed_2_leaves 7 n N/A +Sample5 node_4_condensed_2_leaves 7 n N/A +Sample5 Germany_NRW-10_2020 4 n N/A +Sample5 Germany_NRW-09_2020 4 n N/A +Sample5 Poland_PL_P1_2020 4 n N/A +Sample5 node_20 4 n N/A +Sample5 node_5_condensed_5_leaves 4 n N/A +Sample5 Malaysia_MKAK-CL-2020-5045_2020 7 n N/A +Sample5 node_6_condensed_3_leaves 7 n N/A +Sample5 Jiangsu_JS01_2020 7 n N/A +Sample5 Shanghai_SH0031_2020 7 n N/A +Sample5 Australia_NSW02_2020 7 n N/A +Sample5 node_25 7 n N/A +Sample5 India_1-27_2020 7 n N/A +Sample5 Shanghai_SH0011_2020 7 n N/A +Sample5 Fujian_13_2020 7 n N/A +Sample5 Singapore_11_2020 7 n N/A +Sample5 USA_WI1_2020 7 n N/A +Sample5 Wuhan_HBCDC-HB-05_2020 10 n N/A +Sample5 Shandong_IVDC-SD-001_2020 10 n N/A +Sample5 England_200960041_2020 10 n N/A +Sample5 Australia_NSW05_2020 10 n N/A +Sample5 node_29 10 n N/A +Sample5 node_31 10 n N/A +Sample5 node_32 10 n N/A +Sample5 Kuwait_KU17_2020 10 n N/A +Sample5 node_33 10 n N/A +Sample5 node_34 10 n N/A +Sample5 node_35 10 n N/A +Sample5 node_7_condensed_3_leaves 8 n N/A +Sample5 Jiangsu_JS02_2020 7 n N/A +Sample5 Shanghai_SH0008_2020 7 n N/A +Sample5 USA_CA5_2020 7 n N/A +Sample5 Wuhan_WIV02_2019 7 n N/A +Sample5 node_8_condensed_2_leaves 7 n N/A +Sample5 Singapore_8_2020 7 n N/A +Sample5 node_41 7 n N/A +Sample5 node_9_condensed_2_leaves 7 n N/A +Sample5 Japan_Hu_DP_Kng_19-027_2020 7 n N/A +Sample5 node_10_condensed_3_leaves 7 n N/A +Sample5 Hangzhou_ZJU-09_2020 7 n N/A +Sample5 Australia_VIC01_2020 7 n N/A +Sample5 USA_MA1_2020 7 n N/A +Sample5 node_45 7 n N/A +Sample5 node_48 8 n N/A +Sample5 node_49 8 n N/A +Sample5 Italy_SPL1_2020 8 n N/A +Sample5 England_20102000106_2020 9 n N/A +Sample5 node_51 9 n N/A +Sample5 node_53 9 n N/A +Sample5 England_200960515_2020 9 n N/A +Sample5 node_54 9 n N/A +Sample5 Netherlands_Utrecht_19_2020 7 n N/A +Sample5 Netherlands_Limburg_6_2020 7 n N/A +Sample5 Netherlands_Naarden_1364774_2020 7 n N/A +Sample5 node_56 7 n N/A +Sample5 node_57 7 n N/A +Sample5 Shanghai_SH0086_2020 9 n N/A +Sample5 node_59 9 n N/A +Sample5 node_11_condensed_3_leaves 9 n N/A +Sample5 France_GE1583_2020 13 n N/A +Sample5 Georgia_Tb-390_2020 13 n N/A +Sample5 Spain_Valencia6_2020 13 n N/A +Sample5 Spain_CastillayLeon201437_2020 13 n N/A +Sample5 node_12_condensed_6_leaves 13 n N/A +Sample5 Sichuan_IVDC-SC-001_2020 11 n N/A +Sample5 USA_CA1_2020 11 n N/A +Sample5 USA_IL2_2020 11 n N/A +Sample5 Vietnam_CM99_2020 11 n N/A +Sample5 node_13_condensed_3_leaves 11 n N/A +Sample5 Shanghai_SH0035_2020 10 n N/A +Sample5 Australia_QLD02_2020 10 n N/A +Sample5 Australia_QLD03_2020 10 n N/A +Sample5 Australia_VIC07_2020 10 n N/A +Sample5 node_6 10 n N/A +Sample5 node_14_condensed_6_leaves 10 n N/A +Sample5 Shandong_LY003_2020 9 n N/A +Sample5 Shandong_LY005_2020 9 n N/A +Sample5 node_15_condensed_3_leaves 9 n N/A +Sample5 node_16_condensed_2_leaves 12 n N/A +Sample5 Chongqing_YC01_2020 9 n N/A +Sample5 node_10 9 n N/A +Sample5 Malaysia_MKAK-CL-2020-6430_2020 9 n N/A +Sample5 node_17_condensed_3_leaves 9 n N/A +Sample5 Shanghai_SH0059_2020 9 n N/A +Sample5 USA_TX1_2020 9 n N/A +Sample5 node_14 9 n N/A +Sample5 Shanghai_SH0004_2020 9 n N/A +Sample5 Germany_BavPat3_2020 9 n N/A +Sample5 Shanghai_SH0005_2020 9 n N/A +Sample5 Yunnan_IVDC-YN-003_2020 9 n N/A +Sample5 USA_AZ1_2020 9 n N/A +Sample5 Anhui_SZ005_2020 7 n N/A +Sample5 Beijing_233_2020 10 n N/A 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+Sample5 France_B2334_2020 10 n N/A +Sample5 France_B2340_2020 10 n N/A +Sample5 Georgia_Tb-468_2020 9 n N/A +Sample5 Georgia_Tb-537_2020 9 n N/A +Sample5 Georgia_Tb-54_2020 9 n N/A +Sample5 England_09c_2020 11 n N/A +Sample5 Brazil_ES-225_2020 11 n N/A +Sample5 England_20100001406_2020 11 n N/A +Sample5 node_52 11 n N/A +Sample5 Brazil_SPBR-10_2020 8 n N/A +Sample5 Switzerland_1000477102_2020 10 n N/A +Sample5 Brazil_SPBR-02_2020 10 n N/A +Sample5 England_200990006_2020 10 n N/A +Sample5 Netherlands_Utrecht_18_2020 10 n N/A +Sample5 node_23_condensed_3_leaves 10 n N/A +Sample5 node_24_condensed_2_leaves 8 n N/A +Sample5 Netherlands_Oss_1363500_2020 8 n N/A +Sample5 Netherlands_Tilburg_1363354_2020 8 n N/A +Sample5 Finland_FIN-25_2020 10 n N/A +Sample5 Belgium_DB-03023_2020 10 n N/A +Sample5 Denmark_SSI-102_2020 10 n N/A +Sample5 Denmark_SSI-02_2020 10 n N/A +Sample5 Belgium_BM-03012_2020 10 n N/A +Sample5 England_20100022706_2020 10 n N/A +Sample5 Denmark_SSI-04_2020 10 n N/A +Sample5 Taiwan_NTU03_2020 10 n N/A +Sample5 Finland_FIN03032020A_2020 10 n N/A +Sample5 Switzerland_GE4984_2020 10 n N/A +Sample5 Switzerland_AG0361_2020 10 n N/A +Sample5 Finland_FIN-266_2020 10 n N/A +Sample5 Luxembourg_Lux1_2020 10 n N/A +Sample5 Japan_SMU-0311S3_2020 10 n N/A +Sample5 Denmark_SSI-03_2020 10 n N/A +Sample5 Netherlands_Gelderland_2_2020 10 n N/A +Sample5 Georgia_Tb-273_2020 10 n N/A +Sample5 Belgium_SH-03014_2020 10 n N/A +Sample5 node_60 10 n N/A +Sample5 node_62 10 n N/A +Sample5 Belgium_VAG-03013_2020 10 n N/A +Sample5 node_64 10 n N/A +Sample5 node_65 10 n N/A +Sample5 node_66 10 n N/A +Sample5 node_67 10 n N/A +Sample5 node_68 10 n N/A +Sample5 node_80 10 n N/A +Sample5 node_81 10 n N/A +Sample5 node_82 10 n N/A +Sample5 node_25_condensed_15_leaves 10 n N/A +Sample5 Netherlands_Utrecht_16_2020 11 n N/A +Sample5 Netherlands_Utrecht_17_2020 11 n N/A +Sample5 node_11 11 n N/A +Sample5 node_12 11 n N/A +Sample5 Japan_TY-WK-012_2020 10 n N/A +Sample5 node_26_condensed_2_leaves 10 n N/A +Sample5 node_27_condensed_3_leaves 8 n N/A +Sample5 Shanghai_SH0085_2020 10 n N/A +Sample5 Shanghai_SH0094_2020 10 n N/A +Sample5 Canada_BC_25211_2020 13 n N/A +Sample5 Kuwait_KU09_2020 13 n N/A +Sample5 England_200990002_2020 13 n N/A +Sample5 Germany_BavPat2_2020 13 n N/A +Sample5 node_28_condensed_2_leaves 9 n N/A +Sample5 node_29_condensed_3_leaves 12 n N/A +Sample5 node_61 11 n N/A +Sample5 node_30_condensed_4_leaves 11 n N/A +Sample5 France_HF2174_2020 12 n N/A +Sample5 France_GE1977_2020 12 n N/A +Sample5 France_HF1684_2020 12 n N/A +Sample5 node_63 12 n N/A +Sample5 Netherlands_Utrecht_1363564_2020 14 n N/A +Sample5 node_31_condensed_2_leaves 14 n N/A +Sample5 England_20099107406_2020 11 n N/A +Sample5 Georgia_Tb_2020 11 n N/A +Sample5 France_BFC2094_2020 11 n N/A +Sample5 France_BFC2147_2020 11 n N/A +Sample5 node_32_condensed_4_leaves 11 n N/A +Sample5 Hungary_mbl1_2020 11 n N/A +Sample5 node_33_condensed_5_leaves 11 n N/A +Sample5 Nigeria_Lagos01_2020 13 n N/A +Sample5 Netherlands_Delft_1363424_2020 13 n N/A +Sample5 Denmark_SSI-01_2020 13 n N/A +Sample5 England_200990723_2020 13 n N/A +Sample5 Switzerland_TI2045_2020 13 n N/A +Sample5 Switzerland_1000477377_2020 13 n N/A +Sample5 Denmark_SSI-05_2020 13 n N/A +Sample5 Chile_Santiago-2_2020 13 n N/A +Sample5 Brazil_SPBR-14_2020 13 n N/A +Sample5 Finland_FIN-318_2020 13 n N/A +Sample5 Netherlands_Limburg_5_2020 13 n N/A +Sample5 Belgium_DBA-03032_2020 13 n N/A +Sample5 Switzerland_SZ1417_2020 13 n N/A +Sample5 Belgium_GMH-03022_2020 13 n N/A +Sample5 Netherlands_Utrecht_14_2020 13 n N/A +Sample5 Netherlands_Utrecht_1_2020 13 n N/A +Sample5 Finland_FIN03032020C_2020 13 n N/A +Sample5 Netherlands_Berlicum_1363564_2020 13 n N/A +Sample5 node_69 13 n N/A +Sample5 node_70 13 n N/A +Sample5 node_71 13 n N/A +Sample5 node_72 13 n N/A +Sample5 node_73 13 n N/A +Sample5 node_74 13 n N/A +Sample5 node_75 13 n N/A +Sample5 Belgium_BC-03016_2020 13 n N/A +Sample5 node_76 13 n N/A +Sample5 node_77 13 n N/A +Sample5 node_78 13 n N/A +Sample5 node_34_condensed_7_leaves 13 n N/A +Sample5 Netherlands_NoordHolland_3_2020 11 n N/A +Sample5 Netherlands_Flevoland_1_2020 11 n N/A +Sample5 NetherlandsL_Houten_1363498_2020 11 n N/A +Sample5 Italy_UniSR1_2020 11 n N/A +Sample5 France_N1620_2020 11 n N/A +Sample5 node_35_condensed_3_leaves 11 n N/A +Sample5 Georgia_Tb-673_2020 12 n N/A +Sample5 France_B2330_2020 12 n N/A +Sample5 France_PL1643_2020 12 n N/A +Sample5 France_HF1988_2020 12 n N/A +Sample5 France_B2348_2020 12 n N/A +Sample5 node_83 12 n N/A +Sample5 node_84 12 n N/A +Sample5 Netherlands_Haarlem_1363688_2020 12 n N/A +Sample5 node_36_condensed_6_leaves 12 n N/A +Sample5 USA_CA-CDPH-UC7_2020 14 n N/A +Sample5 USA_CA-CDPH-UC9_2020 14 n N/A +Sample5 node_37_condensed_2_leaves 13 n N/A +Sample5 node_38_condensed_2_leaves 13 n N/A +Sample5 node_39_condensed_2_leaves 13 n N/A +Sample5 node_40_condensed_2_leaves 15 n N/A +Sample5 node_41_condensed_2_leaves 14 n N/A +Sample5 node_42_condensed_2_leaves 14 n N/A +Sample5 Switzerland_1000477797_2020 14 n N/A +Sample5 Brazil_BA-312_2020 14 n N/A +Sample5 node_43_condensed_3_leaves 14 n N/A +Sample5 Finland_FIN-313_2020 15 n N/A +Sample5 Netherlands_Utrecht_15_2020 15 n N/A +Sample5 Switzerland_GE1422_2020 14 n N/A +Sample5 Netherlands_Diemen_1363454_2020 14 n N/A +Sample5 node_44_condensed_3_leaves 14 n N/A +Sample5 Switzerland_BE6651_2020 14 n N/A +Sample5 Netherlands_NoordHolland_2_2020 14 n N/A +Sample5 node_45_condensed_6_leaves 14 n N/A +Sample5 Switzerland_1000477757_2020 14 n N/A +Sample5 Brazil_SPBR-12_2020 14 n N/A +Sample5 Germany_Baden-Wuerttemberg-1_2020 14 n N/A +Sample5 node_46_condensed_16_leaves 14 n N/A +Sample5 Belgium_UMF-03025_2020 14 n N/A +Sample5 node_79 14 n N/A +Sample5 France_B2351_2020 13 n N/A +Sample5 France_B2344_2020 13 n N/A +Sample5 France_B2349_2020 13 n N/A +Sample5 France_IDF2256_2020 13 n N/A +Sample5 France_HF1871_2020 13 n N/A +Sample5 node_47_condensed_2_leaves 15 n N/A
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_06_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_06_mutation_paths.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_85:A27669G +Sample2 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G +Sample5 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_07_single_subtree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((((Sample5:0,Sample4:0)node_87:1,Sample3:0,Sample2:0)node_86:1,Sample1:0)node_85:3,England_SHEF-BFD36_2020:3,France_HF2174_2020:8)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_07_single_subtree_mutations.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,11 @@ +node_1: +node_85: G1440A,G2891A,A27669G +node_86: G14948A +node_87: A23013G +Sample5: +Sample4: +Sample3: +Sample2: +Sample1: +England_SHEF-BFD36_2020: C10741T,C20270T,A29683T +France_HF2174_2020: C241T,C2416T,C3037T,A12745G,C14408T,C20234T,A23403G,G25563T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_08_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_08_mutation_path.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_85:A27669G +Sample2 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G +Sample5 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_09_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_09_mutation_path.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_85:A27669G +Sample2 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G +Sample5 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_10_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,(Sample4:0,Sample5:0)node_85:1,Sample2:0)node_86:1)node_87:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_10_mutation_path.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_87:A27669G +Sample2 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G +Sample5 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_11_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,(Sample4:0,Sample5:0)node_85:1,Sample2:0)node_86:1)node_87:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_11_mutation_path.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_87:A27669G +Sample2 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G +Sample5 node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_12_final_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ +((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0; \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_12_mutation_path.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,5 @@ +Sample1 node_19:G1440A,G2891A node_85:A27669G +Sample2 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample3 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A +Sample4 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G +Sample5 node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_13_path_clades.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,623 @@ +clade root_id from_tree_root +19A node_1 +B node_1 +B.26 node_4 > C7423T +B.48 node_5 > C20270T +B.15 node_8 > T4949C +B.5 node_9 > C29635T +B.54 node_10 > C14805T,G26144T +B.47 node_24 > A10982G +B.20 node_660 > A14940G +B.52 node_661 > A1904G,C8090T,C10789T +B.11 node_662 > T514C +B.46 node_663 > A12557G,C24904T,A27359G +B.1.14 node_664 > C25692T +B.27 node_665 > G29032A +B.19 node_666 > C10277T +B.6 node_674 > C6312A,C13730T,C23929T,C28311T +19B node_676 > C8782T,T28144C +A node_676 > C8782T,T28144C +B.10 node_698 > C6696T +B.4 node_699 > G1397A,T28688C,G29742T +B.23 node_6 > C20270T > A29683T +B.33 node_11 > C14805T,G26144T > T17247C +B.28 node_18 > C14805T,G26144T > G28842T +B.29 node_19 > C14805T,G26144T > C23707T +B.40 node_20 > C14805T,G26144T > A2480G,C2558T +B.30 node_21 > C14805T,G26144T > A4236G,T25655C +B.41 node_22 > C14805T,G26144T > G5572T +B.31 node_23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 node_26 > C241T > C14408T +B.3 node_658 > C241T > T241C,G1440A,G2891A +B.18 node_668 > G29711T > C1218T,G27806T +B.13 node_669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 node_670 > G29711T > T2116A +B.45 node_672 > C28854T > C12710T +B.12 node_673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 node_675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 node_681 > C8782T,T28144C > A17858G,C18060T +A.2 node_682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 node_697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 node_700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 node_701 > G1397A,T28688C,G29742T > C1076T +B.37 node_13 > C14805T,G26144T > T17247C > C8078T +B.35 node_14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 node_15 > C14805T,G26144T > T17247C > A1587G +B.34 node_16 > C14805T,G26144T > T17247C > C988T +B.39 node_17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 node_659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 node_678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 node_680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 node_695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 node_696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A node_28 > C241T > C14408T > A23403G > C3037T +B.1.108 node_28 > C241T > C14408T > A23403G > C3037T +A.23.1 node_691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 node_692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 node_693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 node_694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 node_45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 node_46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 node_47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 node_48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 node_49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 node_50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 node_51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 node_52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 node_53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 node_267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 node_268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 node_272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 node_273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 node_274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 node_275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 node_341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 node_359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 node_360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 node_394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 node_395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 node_396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 node_397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 node_398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 node_400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 node_401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 node_402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 node_403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 node_404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 node_405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 node_406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 node_407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 node_408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 node_412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 node_413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 node_414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 node_415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 node_416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 node_417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 node_418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 node_419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 node_420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 node_421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 node_422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 node_423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 node_424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 node_425 > C241T > C14408T > A23403G > C3037T > G29422T +20B node_426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 node_653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 node_654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 node_657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 node_688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 node_32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 node_33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 node_34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 node_38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 node_39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 node_40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 node_41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 node_42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 node_43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 node_44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 node_54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 node_211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 node_269 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 node_271 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +B.1.415 node_276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 node_304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 node_305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 node_307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 node_308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 node_311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 node_312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 node_313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 node_314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 node_315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 node_342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 node_343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 node_344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 node_345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 node_346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 node_347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 node_348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 node_349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 node_350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 node_351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 node_352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 node_353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 node_355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 node_356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 node_357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 node_358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 node_399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 node_410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 node_411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 node_427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +B.1.1.77 node_655 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C +A.2.3 node_686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 node_687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 node_35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 node_37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 node_60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 node_64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 node_65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 node_66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 node_67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 node_68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 node_69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 node_78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 node_79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 node_80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 node_81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 node_82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 node_83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 node_84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 node_85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 node_105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 node_106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 node_107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 node_108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 node_121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 node_122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 node_123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 node_124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 node_125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 node_126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 node_127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 node_128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 node_129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 node_141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 node_142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 node_146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 node_147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 node_148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 node_149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 node_150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 node_151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 node_152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 node_153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 node_154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 node_155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 node_156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 node_157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 node_158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 node_160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 node_161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 node_162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 node_163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 node_164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 node_165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 node_166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 node_167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 node_168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 node_169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 node_170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 node_171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 node_172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 node_173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 node_174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 node_175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 node_176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 node_177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 node_178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 node_179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 node_180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 node_181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 node_182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 node_183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 node_184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 node_185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 node_186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 node_187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 node_188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 node_189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 node_190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 node_192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 node_199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 node_200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 node_201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 node_202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 node_203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 node_204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 node_205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 node_206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 node_207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 node_208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 node_209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 node_210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 node_249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 node_250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 node_251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 node_252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 node_253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 node_254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 node_255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 node_256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 node_257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 node_258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 node_259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 node_265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 node_266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 node_278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 node_279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 node_280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 node_281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 node_282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 node_283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 node_284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 node_285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 node_287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 node_288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 node_289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 node_290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 node_291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 node_292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 node_296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 node_297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 node_298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 node_299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 node_300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 node_301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 node_302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 node_303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 node_306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 node_340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.177.11 node_365 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 node_366 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T +B.1.177.23 node_381 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.177.16 node_385 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C28310A +B.1.177.15 node_393 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.1.4 node_429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 node_447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 node_448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 node_449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 node_450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 node_451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 node_452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 node_453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 node_454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 node_455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 node_456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 node_457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 node_458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 node_459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 node_460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 node_461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 node_462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 node_463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 node_464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 node_465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 node_467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 node_468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 node_469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 node_470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 node_471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 node_472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 node_473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 node_474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 node_475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 node_476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 node_483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 node_484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 node_485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 node_486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 node_487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 node_489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 node_490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 node_491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 node_492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 node_493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 node_494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 node_495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 node_496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 node_497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 node_499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 node_510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 node_511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 node_512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 node_519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 node_520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 node_521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 node_542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 node_551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 node_552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 node_553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 node_554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 node_555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 node_556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 node_557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.227 node_558 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.133 node_559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 node_561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 node_562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.198 node_563 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.1.97 node_564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 node_565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 node_566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 node_570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 node_571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 node_574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 node_578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 node_579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 node_580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 node_581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 node_582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 node_583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 node_588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 node_593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 node_594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 node_595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 node_596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 node_597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 node_598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 node_604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 node_605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 node_606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 node_607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 node_608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 node_609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 node_612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 node_613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 node_614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 node_615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 node_616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 node_621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 node_625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 node_628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 node_629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 node_630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.315 node_631 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.1.280 node_632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 node_633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 node_634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 node_635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 node_636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 node_637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 node_638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 node_639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 node_640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 node_641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 node_642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 node_643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 node_644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 node_645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 node_646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 node_647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 node_648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 node_649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 node_650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 node_651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 node_652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.1.224 node_656 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.110.1 node_59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 node_71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 node_72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 node_74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 node_75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 node_87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 node_88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 node_89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 node_90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 node_101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 node_102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 node_103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 node_104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +20G node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 node_114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 node_115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 node_117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 node_118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 node_119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 node_120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 node_131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 node_132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 node_134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.375 node_139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 node_140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 node_144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 node_145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 node_159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 node_194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 node_198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 node_213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.523 node_217 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +B.1.454 node_218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 node_219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 node_220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 node_222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 node_223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.160 node_238 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 node_243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 node_244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 node_248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 node_261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 node_262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 node_263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 node_264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 node_286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 node_294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 node_295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 node_310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.256 node_339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.177.26 node_375 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.25 node_380 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.17 node_383 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > C22088T,C29686T +B.1.177.13 node_384 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > G27877T +B.1.177.19 node_387 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > T29185A +B.1.177.20 node_388 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > C10626T +B.1.177.18 node_389 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > G25440T,C27752T +B.1.177.10 node_391 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G28321A +B.1.177.9 node_392 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G21800T,A22053C +B.1.1.74 node_430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 node_431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 node_435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 node_436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 node_437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 node_439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 node_440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 node_441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 node_442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 node_445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 node_446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 node_466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 node_482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 node_488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 node_498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 node_513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.303 node_528 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.305 node_529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 node_530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 node_531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 node_532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 node_534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 node_535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 node_536 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T +B.1.1.272 node_537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 node_538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 node_539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 node_540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 node_541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 node_543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 node_549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 node_550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 node_560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 node_567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 node_568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 node_569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 node_572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 node_576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 node_577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 node_584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 node_585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 node_586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 node_587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 node_590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 node_591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 node_592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 node_600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 node_601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 node_602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 node_603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 node_610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 node_611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 node_617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 node_622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.219 node_626 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > G5572A,A6366T,G11410A,G25776T +B.1.1.218 node_627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 node_57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 node_76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 node_92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 node_93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 node_94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 node_95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 node_96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 node_97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 node_98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.505 node_99 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +B.1.504 node_100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 node_112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 node_113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 node_116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.427 node_136 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > G9738C,G13713A,C16394T +B.1.94 node_137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T +B.1.282 node_196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 node_197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.466 node_215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > C21614T +B.1.465 node_216 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > T241C,A8821G,C15752T,T26066C +B.1.36.20 node_221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.23 node_232 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.16 node_233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 node_234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.24 node_235 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 node_236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 node_237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 node_246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 node_247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258 node_319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A +B.1.177.21 node_368 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A +B.1.177.22 node_369 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T +B.1.177.2 node_377 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G +B.1.177.3 node_378 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T +B.1.177.4 node_379 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T +B.1.1.289 node_433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 node_434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +B.1.316 node_438 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C +R.2 node_443 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +20J/501Y.V3 node_478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 node_480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 node_481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 node_502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 node_503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 node_504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 node_505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.16 node_506 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 node_507 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +C.2 node_508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 node_509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.294 node_515 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C +B.1.1.293 node_518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 node_523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 node_524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 node_526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 node_527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 node_533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.146 node_573 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T +B.1.429 node_138 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T +B.1.36.1 node_225 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +B.1.36.28 node_226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 node_227 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T +B.1.36.27 node_228 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.21 node_230 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 node_231 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +20A.EU2 node_240 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.258.14 node_334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T +B.1.258.2 node_336 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 node_338 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T +B.1.177.6 node_370 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T +B.1.177.12 node_371 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T +B.1.177.5 node_372 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T +B.1.177.7 node_373 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T +B.1.177.8 node_374 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T +N.1 node_545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 node_546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 node_547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T +B.1.258.16 node_321 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T +G.1 node_337 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +M.1 node_517 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.160.7 node_242 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.258.6 node_324 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 node_325 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.258.10 node_327 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G +B.1.258.12 node_328 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A +B.1.258.17 node_333 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.258.4 node_331 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 node_332 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_13_path_mutations.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,138 @@ +England/MILK-9A8AB8/2020|20-08-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_268:C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T node_269:G4442T,C6525T,A16044T England/MILK-9A8AB8/2020|20-08-31:C222T +England/CAMC-106415F/2021|21-01-15 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_268:C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T node_271:G4504T,T8983G,G11761T,T12655C,C26461T,A28133T England/CAMC-106415F/2021|21-01-15:C12116T,C12459T,A23503T,A23989T,C24023T,G28899A +England/CAMC-C470F2/2020|20-12-10 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_268:C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T node_271:G4504T,T8983G,G11761T,T12655C,C26461T,A28133T England/CAMC-C470F2/2020|20-12-10:C6794T,C8814T,C13452T +Spain/R60/2020|LR884131.1|20-04-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_654:C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T node_655:T15933C,T16968G,T29784C Spain/R60/2020|LR884131.1|20-04-17:G3849A,G27506T,C29203T +USA/CA-CZB-5682/2020|MW276261.1|20-07-23 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_654:C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T node_655:T15933C,T16968G,T29784C USA/CA-CZB-5682/2020|MW276261.1|20-07-23:A14424G,G18880T,C28057T,C29774T +England/QEUH-9C7EA8/2020|20-09-11 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_268:C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T node_269:G4442T,C6525T,A16044T node_270:G2407T,G11761T England/QEUH-9C7EA8/2020|20-09-11:T2924C +Scotland/QEUH-9D11C0/2020|20-09-16 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G 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G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14: C15274T +node_687: C28311T +England/OXON-B0922/2020|20-03-28: C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31: G17632A +node_688: C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +USA/WA-S4100/2021|MW555971.1|21-01-18: G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19: C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +node_689: G22468T,G28878A,G29742A +node_690: T22468G +node_691: C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +England/ALDP-CB55B4/2020|20-12-20: C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21: G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +node_692: G16381A,T17877C,G25500T +USA/WI-UW-06/2020|MT772088.1|20-03-21: C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24: C25854T +node_693: C24370T +GHA/34927_S20/2020|MT890226.1|20-05-23: C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24: C2306T,C5672T,C5986T,C13515T,G24926T +node_694: T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07: C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26: A4984T,A7854G,A21062G,A28254C +node_695: A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25: G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03: C6541T,C9988T,T25904C +node_696: G9802A,G11230T,A16512G,C19951T,G26428T +England/CAMC-C91F38/2020|20-12-11: C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10: C10818T,T11230G,C25702T +node_697: T490A,C3177T,C24034T,T26729C,G28077C +USA/COVID20-0008/2020|MT764174.1|20-03-10: T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28: +node_698: C6696T +England/LIVE-9E66F/2020|20-04-10: C7765T,G10256T +Scotland/CVR705/2020|20-03-26: C11001T,G17122T +node_699: G1397A,T28688C,G29742T +England/PHEC-1A601/2020|20-03-04: A19526G +England/PHEC-2275E/2020|20-06-22: G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +node_700: A1079C,C9319T,C19862T,T27384C +USA/CA-QDX-1421/2020|MW065371.1|20-03-18: C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19: C6701T,T7225C +node_701: C1076T +AUS/VIC1255/2020|MT451830.1|20-04-11: T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29: A28955T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_14_path_clades.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,623 @@ +clade root_id from_tree_root +19A node_1 +B node_1 +B.26 node_4 > C7423T +B.48 node_5 > C20270T +B.15 node_8 > T4949C +B.5 node_9 > C29635T +B.54 node_10 > C14805T,G26144T +B.47 node_24 > A10982G +B.20 node_660 > A14940G +B.52 node_661 > A1904G,C8090T,C10789T +B.11 node_662 > T514C +B.46 node_663 > A12557G,C24904T,A27359G +B.1.14 node_664 > C25692T +B.27 node_665 > G29032A +B.19 node_666 > C10277T +B.6 node_674 > C6312A,C13730T,C23929T,C28311T +19B node_676 > C8782T,T28144C +A node_676 > C8782T,T28144C +B.10 node_698 > C6696T +B.4 node_699 > G1397A,T28688C,G29742T +B.23 node_6 > C20270T > A29683T +B.33 node_11 > C14805T,G26144T > T17247C +B.28 node_18 > C14805T,G26144T > G28842T +B.29 node_19 > C14805T,G26144T > C23707T +B.40 node_20 > C14805T,G26144T > A2480G,C2558T +B.30 node_21 > C14805T,G26144T > A4236G,T25655C +B.41 node_22 > C14805T,G26144T > G5572T +B.31 node_23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 node_26 > C241T > C14408T +B.3 node_658 > C241T > T241C,G1440A,G2891A +B.18 node_668 > G29711T > C1218T,G27806T +B.13 node_669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 node_670 > G29711T > T2116A +B.45 node_672 > C28854T > C12710T +B.12 node_673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 node_675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 node_681 > C8782T,T28144C > A17858G,C18060T +A.2 node_682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 node_697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 node_700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 node_701 > G1397A,T28688C,G29742T > C1076T +B.37 node_13 > C14805T,G26144T > T17247C > C8078T +B.35 node_14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 node_15 > C14805T,G26144T > T17247C > A1587G +B.34 node_16 > C14805T,G26144T > T17247C > C988T +B.39 node_17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 node_659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 node_678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 node_680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 node_695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 node_696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A node_28 > C241T > C14408T > A23403G > C3037T +B.1.108 node_28 > C241T > C14408T > A23403G > C3037T +A.23.1 node_691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 node_692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 node_693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 node_694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 node_45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 node_46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 node_47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 node_48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 node_49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 node_50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 node_51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 node_52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 node_53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 node_267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 node_268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 node_272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 node_273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 node_274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 node_275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 node_341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 node_359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 node_360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 node_394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 node_395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 node_396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 node_397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 node_398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 node_400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 node_401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 node_402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 node_403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 node_404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 node_405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 node_406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 node_407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 node_408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 node_412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 node_413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 node_414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 node_415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 node_416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 node_417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 node_418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 node_419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 node_420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 node_421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 node_422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 node_423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 node_424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 node_425 > C241T > C14408T > A23403G > C3037T > G29422T +20B node_426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 node_653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 node_654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 node_657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 node_688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 node_32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 node_33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 node_34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 node_38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 node_39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 node_40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 node_41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 node_42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 node_43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 node_44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 node_54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 node_211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 node_269 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 node_271 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +B.1.415 node_276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 node_304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 node_305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 node_307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 node_308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 node_311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 node_312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 node_313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 node_314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 node_315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 node_342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 node_343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 node_344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 node_345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 node_346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 node_347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 node_348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 node_349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 node_350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 node_351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 node_352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 node_353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 node_355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 node_356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 node_357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 node_358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 node_399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 node_410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 node_411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 node_427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +B.1.1.77 node_655 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C +A.2.3 node_686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 node_687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 node_35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 node_37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 node_60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 node_64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 node_65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 node_66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 node_67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 node_68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 node_69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 node_78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 node_79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 node_80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 node_81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 node_82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 node_83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 node_84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 node_85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 node_105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 node_106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 node_107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 node_108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 node_121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 node_122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 node_123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 node_124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 node_125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 node_126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 node_127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 node_128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 node_129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 node_141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 node_142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 node_146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 node_147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 node_148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 node_149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 node_150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 node_151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 node_152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 node_153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 node_154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 node_155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 node_156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 node_157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 node_158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 node_160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 node_161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 node_162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 node_163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 node_164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 node_165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 node_166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 node_167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 node_168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 node_169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 node_170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 node_171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 node_172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 node_173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 node_174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 node_175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 node_176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 node_177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 node_178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 node_179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 node_180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 node_181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 node_182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 node_183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 node_184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 node_185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 node_186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 node_187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 node_188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 node_189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 node_190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 node_192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 node_199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 node_200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 node_201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 node_202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 node_203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 node_204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 node_205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 node_206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 node_207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 node_208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 node_209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 node_210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 node_249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 node_250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 node_251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 node_252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 node_253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 node_254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 node_255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 node_256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 node_257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 node_258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 node_259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 node_265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 node_266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 node_278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 node_279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 node_280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 node_281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 node_282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 node_283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 node_284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 node_285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 node_287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 node_288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 node_289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 node_290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 node_291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 node_292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 node_296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 node_297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 node_298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 node_299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 node_300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 node_301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 node_302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 node_303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 node_306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 node_340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.177.11 node_365 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 node_366 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T +B.1.177.23 node_381 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.177.16 node_385 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C28310A +B.1.177.15 node_393 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.1.4 node_429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 node_447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 node_448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 node_449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 node_450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 node_451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 node_452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 node_453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 node_454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 node_455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 node_456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 node_457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 node_458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 node_459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 node_460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 node_461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 node_462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 node_463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 node_464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 node_465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 node_467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 node_468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 node_469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 node_470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 node_471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 node_472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 node_473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 node_474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 node_475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 node_476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 node_483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 node_484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 node_485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 node_486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 node_487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 node_489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 node_490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 node_491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 node_492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 node_493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 node_494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 node_495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 node_496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 node_497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 node_499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 node_510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 node_511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 node_512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 node_519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 node_520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 node_521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 node_542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 node_551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 node_552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 node_553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 node_554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 node_555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 node_556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 node_557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.227 node_558 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.133 node_559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 node_561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 node_562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.198 node_563 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.1.97 node_564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 node_565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 node_566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 node_570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 node_571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 node_574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 node_578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 node_579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 node_580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 node_581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 node_582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 node_583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 node_588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 node_593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 node_594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 node_595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 node_596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 node_597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 node_598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 node_604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 node_605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 node_606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 node_607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 node_608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 node_609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 node_612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 node_613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 node_614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 node_615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 node_616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 node_621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 node_625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 node_628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 node_629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 node_630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.315 node_631 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.1.280 node_632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 node_633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 node_634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 node_635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 node_636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 node_637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 node_638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 node_639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 node_640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 node_641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 node_642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 node_643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 node_644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 node_645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 node_646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 node_647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 node_648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 node_649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 node_650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 node_651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 node_652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.1.224 node_656 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.110.1 node_59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 node_71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 node_72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 node_74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 node_75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 node_87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 node_88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 node_89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 node_90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 node_101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 node_102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 node_103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 node_104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +20G node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 node_114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 node_115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 node_117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 node_118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 node_119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 node_120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 node_131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 node_132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 node_134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.375 node_139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 node_140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 node_144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 node_145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 node_159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 node_194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 node_198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 node_213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.523 node_217 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +B.1.454 node_218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 node_219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 node_220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 node_222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 node_223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.160 node_238 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 node_243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 node_244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 node_248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 node_261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 node_262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 node_263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 node_264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 node_286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 node_294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 node_295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 node_310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.256 node_339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.177.26 node_375 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.25 node_380 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.17 node_383 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > C22088T,C29686T +B.1.177.13 node_384 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > G27877T +B.1.177.19 node_387 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > T29185A +B.1.177.20 node_388 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > C10626T +B.1.177.18 node_389 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > G25440T,C27752T +B.1.177.10 node_391 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G28321A +B.1.177.9 node_392 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G21800T,A22053C +B.1.1.74 node_430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 node_431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 node_435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 node_436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 node_437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 node_439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 node_440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 node_441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 node_442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 node_445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 node_446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 node_466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 node_482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 node_488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 node_498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 node_513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.303 node_528 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.305 node_529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 node_530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 node_531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 node_532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 node_534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 node_535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 node_536 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T +B.1.1.272 node_537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 node_538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 node_539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 node_540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 node_541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 node_543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 node_549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 node_550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 node_560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 node_567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 node_568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 node_569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 node_572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 node_576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 node_577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 node_584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 node_585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 node_586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 node_587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 node_590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 node_591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 node_592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 node_600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 node_601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 node_602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 node_603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 node_610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 node_611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 node_617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 node_622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.219 node_626 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > G5572A,A6366T,G11410A,G25776T +B.1.1.218 node_627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 node_57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 node_76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 node_92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 node_93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 node_94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 node_95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 node_96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 node_97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 node_98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.505 node_99 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +B.1.504 node_100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 node_112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 node_113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 node_116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.427 node_136 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > G9738C,G13713A,C16394T +B.1.94 node_137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T +B.1.282 node_196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 node_197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.466 node_215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > C21614T +B.1.465 node_216 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > T241C,A8821G,C15752T,T26066C +B.1.36.20 node_221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.23 node_232 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.16 node_233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 node_234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.24 node_235 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 node_236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 node_237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 node_246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 node_247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258 node_319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A +B.1.177.21 node_368 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A +B.1.177.22 node_369 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T +B.1.177.2 node_377 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G +B.1.177.3 node_378 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T +B.1.177.4 node_379 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T +B.1.1.289 node_433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 node_434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +B.1.316 node_438 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C +R.2 node_443 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +20J/501Y.V3 node_478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 node_480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 node_481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 node_502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 node_503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 node_504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 node_505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.16 node_506 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 node_507 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +C.2 node_508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 node_509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.294 node_515 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C +B.1.1.293 node_518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 node_523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 node_524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 node_526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 node_527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 node_533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.146 node_573 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T +B.1.429 node_138 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T +B.1.36.1 node_225 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +B.1.36.28 node_226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 node_227 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T +B.1.36.27 node_228 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.21 node_230 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 node_231 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +20A.EU2 node_240 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.258.14 node_334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T +B.1.258.2 node_336 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 node_338 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T +B.1.177.6 node_370 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T +B.1.177.12 node_371 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T +B.1.177.5 node_372 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T +B.1.177.7 node_373 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T +B.1.177.8 node_374 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T +N.1 node_545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 node_546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 node_547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T +B.1.258.16 node_321 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T +G.1 node_337 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +M.1 node_517 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.160.7 node_242 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.258.6 node_324 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 node_325 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.258.10 node_327 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G +B.1.258.12 node_328 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A +B.1.258.17 node_333 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.258.4 node_331 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 node_332 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_14_path_mutations.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1096 @@ +England/BRIS-1853249/2020|20-04-02 node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T +Wales/PHWC-25B04/2020|20-03-24 node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G +NPL/61-TW/2020|MT072688.1|20-01-13 node_2:C24034T +Wales/LIVE-A6831/2020|20-03-16 node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C +Scotland/EDB1317/2020|20-04-09 node_4:C7423T Scotland/EDB1317/2020|20-04-09:G4207A,T7423C +Scotland/EDB354/2020|20-03-30 node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C +England/SHEF-BFF8B/2020|20-03-25 node_5:C20270T England/SHEF-BFF8B/2020|20-03-25:C1473T +England/LCST-24D7202/2020|20-06-22 node_5:C20270T node_6:A29683T node_7:A18671G England/LCST-24D7202/2020|20-06-22:C4021T,A9963T,T24027C +England/SHEF-BFFC7/2020|20-03-25 node_8:T4949C England/SHEF-BFFC7/2020|20-03-25:G28027T +England/PHEC-1E01E/2020|20-04-03 node_8:T4949C England/PHEC-1E01E/2020|20-04-03:C22445T +DP0476/2020|LC571003.1|20-02-16 node_9:C29635T DP0476/2020|LC571003.1|20-02-16:C29592T +DP0191/2020|LC570980.1|20-02-15 node_9:C29635T DP0191/2020|LC570980.1|20-02-15:A3854G +England/LIVE-A5D06/2020|20-03-17 node_24:A10982G England/LIVE-A5D06/2020|20-03-17:C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 node_24:A10982G England/LIVE-A065B/2020|20-05-27:C823T,C8752T,A9741C,C19961T,C26333T,C26408T +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 node_660:A14940G USA/CA-CZB-1091/2020|MT460091.1|20-05-01:C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 node_660:A14940G USA/CA-CZB-11876/2020|MW276506.1|20-04-08:A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 node_662:T514C USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24:C22033A +NED/NB02_13KS/2020|MT457397.1|20-04-29 node_662:T514C NED/NB02_13KS/2020|MT457397.1|20-04-29:G1607A,A10829G,G12795A,C17410T,A22920T +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 node_663:A12557G,C24904T,A27359G 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mutations":"A158G,C706T,C5974T,A26459G","sample":"Japan/TKYE624705_2020/2020|LC593810.1|20-07"},"mutations":{"nuc":["A158G","C706T","C5974T","A26459G"]}},"name":"Japan/TKYE624705_2020/2020|LC593810.1|20-07","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"country":{"value":"Japan"},"date":{"value":"20-07"},"div":18,"mutation_of_interest":{"value":""}}}],"name":"node_527","node_attrs":{"MAT_Clade_0":{"value":"B.1.1.284"},"MAT_Clade_1":{"value":""},"div":14,"mutation_of_interest":{"value":""}}}],"name":"node_525","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"div":9,"mutation_of_interest":{"value":""}}},{"branch_attrs":{"labels":{"id":"node_522","mutation_of_interest":"","nuc mutations":"G4510A","sample":"node_522"},"mutations":{"nuc":["G4510A"]}},"children":[{"branch_attrs":{"labels":{"id":"node_523","mutation_of_interest":"","nuc mutations":"G15438T,G25785T","sample":"node_523"},"mutations":{"nuc":["G15438T","G25785T"]}},"children":[{"branch_attrs":{"labels":{"id":"England/ALDP-A525BB/2020|20-10-07","mutation_of_interest":"","nuc mutations":"C1758T,G18337T,G24757T,G28903T,G29260T","sample":"England/ALDP-A525BB/2020|20-10-07"},"mutations":{"nuc":["C1758T","G18337T","G24757T","G28903T","G29260T"]}},"name":"England/ALDP-A525BB/2020|20-10-07","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"country":{"value":"England"},"date":{"value":"20-10-07"},"div":16,"mutation_of_interest":{"value":""}}},{"branch_attrs":{"labels":{"id":"ISR/NH_M2_0614/2020|MW194121.1|20-06-14","mutation_of_interest":"","nuc mutations":"C541T,C1528T,C2836T,C8905T,A23125T,G28851T","sample":"ISR/NH_M2_0614/2020|MW194121.1|20-06-14"},"mutations":{"nuc":["C541T","C1528T","C2836T","C8905T","A23125T","G28851T"]}},"name":"ISR/NH_M2_0614/2020|MW194121.1|20-06-14","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"country":{"value":"ISR"},"date":{"value":"20-06-14"},"div":17,"mutation_of_interest":{"value":""}}}],"name":"node_523","node_attrs":{"MAT_Clade_0":{"value":"B.1.1.50"},"MAT_Clade_1":{"value":""},"div":11,"mutation_of_interest":{"value":""}}},{"branch_attrs":{"labels":{"id":"node_524","mutation_of_interest":"","nuc mutations":"G19480A","sample":"node_524"},"mutations":{"nuc":["G19480A"]}},"children":[{"branch_attrs":{"labels":{"id":"England/MILK-A45AF8/2020|20-10-06","mutation_of_interest":"","nuc 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_15_subtree_no_genotype.vcf Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,3341 @@ +##fileformat=VCFv4.2 +#CHROM POS ID REF ALT QUAL FILTER INFO +NC_045512v2 61 G61T G T . . AC=2;AN=1116 +NC_045512v2 66 C66A,C66T C A,T . . AC=2,6;AN=1116 +NC_045512v2 83 T83C T C . . AC=1;AN=1116 +NC_045512v2 94 G94T G T . . AC=1;AN=1116 +NC_045512v2 96 C96T C T . . AC=1;AN=1116 +NC_045512v2 100 C100T C T . . AC=2;AN=1116 +NC_045512v2 105 G105T G T . . AC=1;AN=1116 +NC_045512v2 106 C106T C T . . AC=1;AN=1116 +NC_045512v2 125 C125T C T . . AC=1;AN=1116 +NC_045512v2 140 C140T C T . . AC=1;AN=1116 +NC_045512v2 147 C147T C T . . AC=3;AN=1116 +NC_045512v2 158 A158G A G . . AC=1;AN=1116 +NC_045512v2 160 G160T G T . . AC=2;AN=1116 +NC_045512v2 169 A169G A G . . AC=1;AN=1116 +NC_045512v2 174 G174T G T . . AC=8;AN=1116 +NC_045512v2 181 T181C T C . . AC=2;AN=1116 +NC_045512v2 186 C186T C T . . AC=2;AN=1116 +NC_045512v2 187 A187G A G . . AC=5;AN=1116 +NC_045512v2 199 G199T G T . . AC=2;AN=1116 +NC_045512v2 203 C203T C T . . AC=2;AN=1116 +NC_045512v2 204 G204T G T . . AC=15;AN=1116 +NC_045512v2 208 G208T G T . . AC=4;AN=1116 +NC_045512v2 209 T209C T C . . AC=1;AN=1116 +NC_045512v2 210 G210T G T . . AC=3;AN=1116 +NC_045512v2 222 C222T C T . . AC=5;AN=1116 +NC_045512v2 235 A235C A C . . AC=1;AN=1116 +NC_045512v2 241 C241T C T . . AC=1116;AN=1116 +NC_045512v2 242 G242T G T . . AC=1;AN=1116 +NC_045512v2 245 C245T C T . . AC=1;AN=1116 +NC_045512v2 248 G248T G T . . AC=1;AN=1116 +NC_045512v2 271 G271T G T . . AC=1;AN=1116 +NC_045512v2 313 C313T C T . . AC=39;AN=1116 +NC_045512v2 335 C335T C T . . AC=3;AN=1116 +NC_045512v2 337 C337T C T . . AC=1;AN=1116 +NC_045512v2 344 C344T C T . . AC=1;AN=1116 +NC_045512v2 346 C346T C T . . AC=2;AN=1116 +NC_045512v2 361 A361G A G . . AC=1;AN=1116 +NC_045512v2 370 G370T G T . . AC=2;AN=1116 +NC_045512v2 379 C379A,C379T C A,T . . AC=2,1;AN=1116 +NC_045512v2 390 C390T C T . . AC=1;AN=1116 +NC_045512v2 401 C401T C T . . AC=1;AN=1116 +NC_045512v2 408 A408G A G . . AC=4;AN=1116 +NC_045512v2 419 G419A G A . . AC=1;AN=1116 +NC_045512v2 443 G443A G A . . AC=2;AN=1116 +NC_045512v2 445 T445C T C . . AC=52;AN=1116 +NC_045512v2 454 A454G A G . . AC=1;AN=1116 +NC_045512v2 466 C466T C T . . AC=1;AN=1116 +NC_045512v2 475 C475T C T . . AC=2;AN=1116 +NC_045512v2 476 A476G A G . . AC=1;AN=1116 +NC_045512v2 478 C478T C T . . AC=2;AN=1116 +NC_045512v2 487 G487A G A . . AC=1;AN=1116 +NC_045512v2 488 G488T G T . . AC=1;AN=1116 +NC_045512v2 489 A489G A G . . AC=1;AN=1116 +NC_045512v2 505 T505C T C . . AC=3;AN=1116 +NC_045512v2 506 C506T C T . . AC=1;AN=1116 +NC_045512v2 511 T511C T C . . AC=1;AN=1116 +NC_045512v2 512 C512T C T . . AC=1;AN=1116 +NC_045512v2 521 G521T G T . . AC=3;AN=1116 +NC_045512v2 526 G526C,G526T G C,T . . AC=1,1;AN=1116 +NC_045512v2 527 C527T C T . . AC=2;AN=1116 +NC_045512v2 533 G533A G A . . AC=1;AN=1116 +NC_045512v2 538 A538G A G . . AC=3;AN=1116 +NC_045512v2 539 C539T C T . . AC=2;AN=1116 +NC_045512v2 541 C541T C T . . AC=1;AN=1116 +NC_045512v2 542 G542A G A . . AC=1;AN=1116 +NC_045512v2 544 A544G A G . . AC=2;AN=1116 +NC_045512v2 556 C556T C T . . AC=3;AN=1116 +NC_045512v2 569 G569A G A . . AC=2;AN=1116 +NC_045512v2 571 G571A G A . . AC=1;AN=1116 +NC_045512v2 583 C583T C T . . AC=1;AN=1116 +NC_045512v2 593 C593T C T . . AC=5;AN=1116 +NC_045512v2 595 T595C T C . . AC=1;AN=1116 +NC_045512v2 596 G596A,G596T G A,T . . AC=1,2;AN=1116 +NC_045512v2 601 C601T C T . . AC=3;AN=1116 +NC_045512v2 619 C619T C T . . AC=1;AN=1116 +NC_045512v2 621 G621A G A . . AC=1;AN=1116 +NC_045512v2 622 C622T C T . . AC=2;AN=1116 +NC_045512v2 625 G625T G T . . AC=2;AN=1116 +NC_045512v2 642 A642G A G . . AC=1;AN=1116 +NC_045512v2 643 C643T C T . . AC=3;AN=1116 +NC_045512v2 658 T658C T C . . AC=1;AN=1116 +NC_045512v2 669 G669T G T . . AC=1;AN=1116 +NC_045512v2 673 C673T C T . . AC=3;AN=1116 +NC_045512v2 675 G675T G T . . AC=1;AN=1116 +NC_045512v2 676 C676T C T . . AC=1;AN=1116 +NC_045512v2 680 G680A,G680T G A,T . . AC=1,1;AN=1116 +NC_045512v2 682 T682C T C . . AC=2;AN=1116 +NC_045512v2 683 C683T C T . . AC=3;AN=1116 +NC_045512v2 696 A696C A C . . AC=2;AN=1116 +NC_045512v2 706 C706T C T . . AC=1;AN=1116 +NC_045512v2 713 G713A G A . . AC=1;AN=1116 +NC_045512v2 715 C715T C T . . AC=2;AN=1116 +NC_045512v2 716 A716G A G . . AC=2;AN=1116 +NC_045512v2 733 T733C T C . . AC=2;AN=1116 +NC_045512v2 749 A749G A G . . AC=2;AN=1116 +NC_045512v2 760 T760C T C . . AC=2;AN=1116 +NC_045512v2 761 A761G A G . . AC=2;AN=1116 +NC_045512v2 772 T772C T C . . AC=2;AN=1116 +NC_045512v2 775 C775T C T . . AC=3;AN=1116 +NC_045512v2 782 C782T C T . . AC=1;AN=1116 +NC_045512v2 790 T790C T C . . AC=2;AN=1116 +NC_045512v2 799 C799T C T . . AC=1;AN=1116 +NC_045512v2 815 C815T C T . . AC=4;AN=1116 +NC_045512v2 823 C823T C T . . AC=7;AN=1116 +NC_045512v2 829 C829T C T . . AC=6;AN=1116 +NC_045512v2 832 C832T C T . . AC=2;AN=1116 +NC_045512v2 833 T833C T C . . AC=4;AN=1116 +NC_045512v2 835 C835T C T . . AC=2;AN=1116 +NC_045512v2 838 T838C T C . . AC=1;AN=1116 +NC_045512v2 840 G840A G A . . AC=1;AN=1116 +NC_045512v2 841 C841T C T . . AC=2;AN=1116 +NC_045512v2 842 C842T C T . . AC=1;AN=1116 +NC_045512v2 847 T847C T C . . AC=1;AN=1116 +NC_045512v2 854 C854T C T . . AC=1;AN=1116 +NC_045512v2 872 G872A,G872T G A,T . . AC=1,2;AN=1116 +NC_045512v2 875 C875T C T . . AC=2;AN=1116 +NC_045512v2 878 C878T C T . . AC=1;AN=1116 +NC_045512v2 882 C882T C T . . AC=4;AN=1116 +NC_045512v2 884 C884T C T . . AC=1;AN=1116 +NC_045512v2 900 C900T C T . . AC=2;AN=1116 +NC_045512v2 901 A901T A T . . AC=1;AN=1116 +NC_045512v2 913 C913T C T . . AC=7;AN=1116 +NC_045512v2 922 G922A,G922T G A,T . . AC=2,3;AN=1116 +NC_045512v2 934 C934T C T . . AC=1;AN=1116 +NC_045512v2 936 C936T C T . . AC=3;AN=1116 +NC_045512v2 960 G960T G T . . AC=1;AN=1116 +NC_045512v2 961 T961C T C . . AC=1;AN=1116 +NC_045512v2 964 A964G A G . . AC=1;AN=1116 +NC_045512v2 974 G974A G A . . AC=1;AN=1116 +NC_045512v2 1005 A1005G A G . . AC=1;AN=1116 +NC_045512v2 1042 G1042T G T . . AC=1;AN=1116 +NC_045512v2 1059 C1059T C T . . AC=233;AN=1116 +NC_045512v2 1060 C1060T C T . . AC=2;AN=1116 +NC_045512v2 1063 C1063T C T . . AC=1;AN=1116 +NC_045512v2 1076 C1076T C T . . AC=3;AN=1116 +NC_045512v2 1088 T1088C T C . . AC=1;AN=1116 +NC_045512v2 1094 T1094C T C . . AC=2;AN=1116 +NC_045512v2 1096 A1096G A G . . AC=2;AN=1116 +NC_045512v2 1098 A1098C A C . . AC=1;AN=1116 +NC_045512v2 1122 C1122T C T . . AC=2;AN=1116 +NC_045512v2 1135 G1135T G T . . AC=2;AN=1116 +NC_045512v2 1141 G1141A,G1141T G A,T . . AC=1,2;AN=1116 +NC_045512v2 1147 T1147C T C . . AC=1;AN=1116 +NC_045512v2 1148 G1148T G T . . AC=1;AN=1116 +NC_045512v2 1150 C1150T C T . . AC=1;AN=1116 +NC_045512v2 1154 A1154G A G . . AC=2;AN=1116 +NC_045512v2 1163 A1163T A T . . AC=9;AN=1116 +NC_045512v2 1169 T1169C T C . . AC=1;AN=1116 +NC_045512v2 1170 C1170T C T . . AC=2;AN=1116 +NC_045512v2 1171 T1171C T C . . AC=2;AN=1116 +NC_045512v2 1186 G1186A G A . . AC=3;AN=1116 +NC_045512v2 1190 C1190T C T . . AC=2;AN=1116 +NC_045512v2 1191 C1191A,C1191T C A,T . . AC=2,2;AN=1116 +NC_045512v2 1194 A1194G A G . . AC=1;AN=1116 +NC_045512v2 1210 G1210T G T . . AC=3;AN=1116 +NC_045512v2 1218 C1218T C T . . AC=1;AN=1116 +NC_045512v2 1230 A1230G A G . . AC=1;AN=1116 +NC_045512v2 1263 C1263T C T . . AC=1;AN=1116 +NC_045512v2 1288 C1288T C T . . AC=6;AN=1116 +NC_045512v2 1291 A1291G A G . . AC=1;AN=1116 +NC_045512v2 1298 G1298A G A . . AC=4;AN=1116 +NC_045512v2 1302 C1302T C T . . AC=2;AN=1116 +NC_045512v2 1306 G1306T G T . . AC=1;AN=1116 +NC_045512v2 1319 G1319A G A . . AC=3;AN=1116 +NC_045512v2 1323 G1323T G T . . AC=1;AN=1116 +NC_045512v2 1325 G1325T G T . . AC=1;AN=1116 +NC_045512v2 1333 T1333A T A . . AC=1;AN=1116 +NC_045512v2 1334 T1334A T A . . AC=1;AN=1116 +NC_045512v2 1338 G1338C G C . . AC=1;AN=1116 +NC_045512v2 1347 C1347T C T . . AC=1;AN=1116 +NC_045512v2 1348 C1348T C T . . AC=2;AN=1116 +NC_045512v2 1359 T1359C T C . . AC=1;AN=1116 +NC_045512v2 1377 C1377T C T . . AC=1;AN=1116 +NC_045512v2 1380 C1380T C T . . AC=1;AN=1116 +NC_045512v2 1403 C1403T C T . . AC=1;AN=1116 +NC_045512v2 1420 C1420T C T . . AC=6;AN=1116 +NC_045512v2 1427 C1427T C T . . AC=4;AN=1116 +NC_045512v2 1437 C1437T C T . . AC=4;AN=1116 +NC_045512v2 1438 T1438C T C . . AC=1;AN=1116 +NC_045512v2 1457 C1457T C T . . AC=3;AN=1116 +NC_045512v2 1463 G1463A G A . . AC=2;AN=1116 +NC_045512v2 1464 G1464A G A . . AC=5;AN=1116 +NC_045512v2 1471 C1471T C T . . AC=2;AN=1116 +NC_045512v2 1489 C1489T C T . . AC=1;AN=1116 +NC_045512v2 1495 G1495T G T . . AC=2;AN=1116 +NC_045512v2 1498 C1498T C T . . AC=2;AN=1116 +NC_045512v2 1514 C1514T C T . . AC=2;AN=1116 +NC_045512v2 1519 C1519T C T . . AC=2;AN=1116 +NC_045512v2 1528 C1528T C T . . AC=1;AN=1116 +NC_045512v2 1541 C1541T C T . . AC=2;AN=1116 +NC_045512v2 1543 T1543A T A . . AC=2;AN=1116 +NC_045512v2 1545 C1545T C T . . AC=1;AN=1116 +NC_045512v2 1550 G1550A G A . . AC=1;AN=1116 +NC_045512v2 1589 G1589A,G1589T G A,T . . AC=2,1;AN=1116 +NC_045512v2 1590 G1590T G T . . AC=2;AN=1116 +NC_045512v2 1593 C1593T C T . . AC=3;AN=1116 +NC_045512v2 1594 C1594T C T . . AC=3;AN=1116 +NC_045512v2 1599 G1599T G T . . AC=2;AN=1116 +NC_045512v2 1601 C1601T C T . . AC=1;AN=1116 +NC_045512v2 1610 A1610G A G . . AC=2;AN=1116 +NC_045512v2 1623 T1623C T C . . AC=1;AN=1116 +NC_045512v2 1625 C1625T C T . . AC=1;AN=1116 +NC_045512v2 1627 C1627T C T . . AC=2;AN=1116 +NC_045512v2 1628 C1628A C A . . AC=1;AN=1116 +NC_045512v2 1630 A1630C A C . . AC=2;AN=1116 +NC_045512v2 1659 G1659A,G1659T G A,T . . AC=1,2;AN=1116 +NC_045512v2 1663 C1663T C T . . AC=1;AN=1116 +NC_045512v2 1673 A1673G A G . . AC=2;AN=1116 +NC_045512v2 1683 T1683C T C . . AC=1;AN=1116 +NC_045512v2 1684 C1684T C T . . AC=2;AN=1116 +NC_045512v2 1699 A1699G A G . . AC=1;AN=1116 +NC_045512v2 1714 C1714T C T . . AC=2;AN=1116 +NC_045512v2 1722 C1722T C T . . AC=1;AN=1116 +NC_045512v2 1729 G1729A G A . . AC=2;AN=1116 +NC_045512v2 1734 C1734T C T . . AC=2;AN=1116 +NC_045512v2 1738 G1738T G T . . AC=3;AN=1116 +NC_045512v2 1755 A1755G A G . . AC=1;AN=1116 +NC_045512v2 1758 C1758T C T . . AC=1;AN=1116 +NC_045512v2 1778 T1778C T C . . AC=1;AN=1116 +NC_045512v2 1800 C1800A C A . . AC=2;AN=1116 +NC_045512v2 1801 A1801G A G . . AC=1;AN=1116 +NC_045512v2 1807 A1807G A G . . AC=1;AN=1116 +NC_045512v2 1812 C1812T C T . . AC=1;AN=1116 +NC_045512v2 1820 G1820A G A . . AC=8;AN=1116 +NC_045512v2 1824 C1824T C T . . AC=1;AN=1116 +NC_045512v2 1834 T1834C T C . . AC=1;AN=1116 +NC_045512v2 1843 G1843A G A . . AC=1;AN=1116 +NC_045512v2 1847 T1847C T C . . AC=1;AN=1116 +NC_045512v2 1848 C1848T C T . . AC=1;AN=1116 +NC_045512v2 1863 T1863C T C . . AC=1;AN=1116 +NC_045512v2 1866 A1866G A G . . AC=2;AN=1116 +NC_045512v2 1869 C1869T C T . . AC=1;AN=1116 +NC_045512v2 1874 G1874T G T . . AC=2;AN=1116 +NC_045512v2 1882 G1882T G T . . AC=1;AN=1116 +NC_045512v2 1884 C1884T C T . . AC=4;AN=1116 +NC_045512v2 1887 C1887T C T . . AC=2;AN=1116 +NC_045512v2 1904 A1904G A G . . AC=2;AN=1116 +NC_045512v2 1908 T1908C T C . . AC=1;AN=1116 +NC_045512v2 1909 C1909T C T . . AC=2;AN=1116 +NC_045512v2 1912 C1912T C T . . AC=9;AN=1116 +NC_045512v2 1914 G1914A G A . . AC=2;AN=1116 +NC_045512v2 1917 C1917T C T . . AC=2;AN=1116 +NC_045512v2 1918 T1918C T C . . AC=2;AN=1116 +NC_045512v2 1921 T1921C T C . . AC=1;AN=1116 +NC_045512v2 1925 A1925C A C . . AC=1;AN=1116 +NC_045512v2 1929 C1929T C T . . AC=1;AN=1116 +NC_045512v2 1937 T1937C T C . . AC=1;AN=1116 +NC_045512v2 1938 C1938T C T . . AC=1;AN=1116 +NC_045512v2 1943 C1943T C T . . AC=1;AN=1116 +NC_045512v2 1947 T1947C T C . . AC=8;AN=1116 +NC_045512v2 1957 G1957T G T . . AC=1;AN=1116 +NC_045512v2 1958 G1958A G A . . AC=1;AN=1116 +NC_045512v2 1960 C1960T C T . . AC=2;AN=1116 +NC_045512v2 1962 C1962T C T . . AC=2;AN=1116 +NC_045512v2 1968 C1968T C T . . AC=4;AN=1116 +NC_045512v2 1973 C1973T C T . . AC=1;AN=1116 +NC_045512v2 1987 A1987G A G . . AC=6;AN=1116 +NC_045512v2 1990 G1990T G T . . AC=2;AN=1116 +NC_045512v2 1997 C1997T C T . . AC=2;AN=1116 +NC_045512v2 2003 C2003T C T . . AC=1;AN=1116 +NC_045512v2 2018 A2018G A G . . AC=2;AN=1116 +NC_045512v2 2031 A2031G A G . . AC=1;AN=1116 +NC_045512v2 2035 G2035T G T . . AC=1;AN=1116 +NC_045512v2 2037 C2037T C T . . AC=1;AN=1116 +NC_045512v2 2044 C2044T C T . . AC=1;AN=1116 +NC_045512v2 2048 C2048T C T . . AC=1;AN=1116 +NC_045512v2 2062 C2062T C T . . AC=3;AN=1116 +NC_045512v2 2065 C2065T C T . . AC=1;AN=1116 +NC_045512v2 2072 G2072A G A . . AC=2;AN=1116 +NC_045512v2 2086 G2086T G T . . AC=2;AN=1116 +NC_045512v2 2104 A2104G A G . . AC=1;AN=1116 +NC_045512v2 2106 C2106T C T . . AC=1;AN=1116 +NC_045512v2 2113 C2113T C T . . AC=10;AN=1116 +NC_045512v2 2130 A2130T A T . . AC=1;AN=1116 +NC_045512v2 2135 C2135T C T . . AC=1;AN=1116 +NC_045512v2 2140 A2140G A G . . AC=1;AN=1116 +NC_045512v2 2143 C2143T C T . . AC=2;AN=1116 +NC_045512v2 2144 G2144T G T . . AC=1;AN=1116 +NC_045512v2 2151 A2151G A G . . AC=1;AN=1116 +NC_045512v2 2155 G2155T G T . . AC=1;AN=1116 +NC_045512v2 2161 A2161G A G . . AC=2;AN=1116 +NC_045512v2 2164 G2164A G A . . AC=2;AN=1116 +NC_045512v2 2166 A2166G A G . . AC=1;AN=1116 +NC_045512v2 2175 A2175G A G . . AC=1;AN=1116 +NC_045512v2 2252 C2252A C A . . AC=2;AN=1116 +NC_045512v2 2258 G2258A G A . . AC=2;AN=1116 +NC_045512v2 2271 A2271G A G . . AC=1;AN=1116 +NC_045512v2 2272 G2272A,G2272T G A,T . . AC=1,1;AN=1116 +NC_045512v2 2281 G2281A G A . . AC=1;AN=1116 +NC_045512v2 2282 G2282A G A . . AC=2;AN=1116 +NC_045512v2 2285 A2285T A T . . AC=2;AN=1116 +NC_045512v2 2286 G2286A G A . . AC=1;AN=1116 +NC_045512v2 2292 A2292C A C . . AC=3;AN=1116 +NC_045512v2 2300 T2300C T C . . AC=2;AN=1116 +NC_045512v2 2305 G2305T G T . . AC=1;AN=1116 +NC_045512v2 2324 G2324A G A . . AC=1;AN=1116 +NC_045512v2 2334 C2334T C T . . AC=1;AN=1116 +NC_045512v2 2340 C2340T C T . . AC=1;AN=1116 +NC_045512v2 2342 A2342G A G . . AC=1;AN=1116 +NC_045512v2 2358 C2358T C T . . AC=1;AN=1116 +NC_045512v2 2388 C2388T C T . . AC=1;AN=1116 +NC_045512v2 2395 C2395T C T . . AC=3;AN=1116 +NC_045512v2 2398 G2398A G A . . AC=1;AN=1116 +NC_045512v2 2399 C2399T C T . . AC=2;AN=1116 +NC_045512v2 2406 A2406G A G . . AC=1;AN=1116 +NC_045512v2 2407 G2407C,G2407T G C,T . . AC=1,2;AN=1116 +NC_045512v2 2416 C2416T C T . . AC=35;AN=1116 +NC_045512v2 2419 A2419G A G . . AC=1;AN=1116 +NC_045512v2 2433 C2433T C T . . AC=1;AN=1116 +NC_045512v2 2445 C2445T C T . . AC=5;AN=1116 +NC_045512v2 2447 G2447T G T . . AC=2;AN=1116 +NC_045512v2 2453 C2453T C T . . AC=4;AN=1116 +NC_045512v2 2462 C2462A,C2462T C A,T . . AC=1,1;AN=1116 +NC_045512v2 2466 A2466G A G . . AC=2;AN=1116 +NC_045512v2 2468 G2468A G A . . AC=1;AN=1116 +NC_045512v2 2470 C2470T C T . . AC=1;AN=1116 +NC_045512v2 2475 A2475G A G . . AC=2;AN=1116 +NC_045512v2 2480 A2480G A G . . AC=1;AN=1116 +NC_045512v2 2484 T2484C T C . . AC=1;AN=1116 +NC_045512v2 2488 C2488T C T . . AC=2;AN=1116 +NC_045512v2 2494 G2494A G A . . AC=1;AN=1116 +NC_045512v2 2509 C2509T C T . . AC=6;AN=1116 +NC_045512v2 2511 C2511T C T . . AC=1;AN=1116 +NC_045512v2 2516 G2516T G T . . AC=1;AN=1116 +NC_045512v2 2523 C2523T C T . . AC=3;AN=1116 +NC_045512v2 2525 G2525A G A . . AC=1;AN=1116 +NC_045512v2 2526 A2526C,A2526G A C,G . . AC=2,2;AN=1116 +NC_045512v2 2533 T2533C T C . . AC=1;AN=1116 +NC_045512v2 2534 G2534T G T . . AC=1;AN=1116 +NC_045512v2 2536 C2536T C T . . AC=4;AN=1116 +NC_045512v2 2537 T2537G T G . . AC=2;AN=1116 +NC_045512v2 2545 T2545C T C . . AC=1;AN=1116 +NC_045512v2 2549 G2549A G A . . AC=1;AN=1116 +NC_045512v2 2570 C2570T C T . . AC=1;AN=1116 +NC_045512v2 2576 A2576T A T . . AC=2;AN=1116 +NC_045512v2 2578 T2578C T C . . AC=1;AN=1116 +NC_045512v2 2597 T2597C T C . . AC=4;AN=1116 +NC_045512v2 2623 C2623T C T . . AC=1;AN=1116 +NC_045512v2 2635 G2635A G A . . AC=1;AN=1116 +NC_045512v2 2638 C2638T C T . . AC=2;AN=1116 +NC_045512v2 2641 A2641G A G . . AC=4;AN=1116 +NC_045512v2 2644 C2644A,C2644T C A,T . . AC=1,1;AN=1116 +NC_045512v2 2647 A2647G A G . . AC=1;AN=1116 +NC_045512v2 2655 A2655C A C . . AC=1;AN=1116 +NC_045512v2 2658 A2658G A G . . AC=1;AN=1116 +NC_045512v2 2659 G2659A,G2659T G A,T . . AC=2,5;AN=1116 +NC_045512v2 2664 G2664A G A . . AC=1;AN=1116 +NC_045512v2 2668 C2668T C T . . AC=2;AN=1116 +NC_045512v2 2679 A2679G A G . . AC=1;AN=1116 +NC_045512v2 2692 A2692T A T . . AC=2;AN=1116 +NC_045512v2 2698 T2698C T C . . AC=1;AN=1116 +NC_045512v2 2706 C2706T C T . . AC=4;AN=1116 +NC_045512v2 2710 C2710T C T . . AC=1;AN=1116 +NC_045512v2 2749 C2749T C T . . AC=2;AN=1116 +NC_045512v2 2756 A2756G A G . . AC=1;AN=1116 +NC_045512v2 2764 G2764T G T . . AC=1;AN=1116 +NC_045512v2 2775 A2775G A G . . AC=2;AN=1116 +NC_045512v2 2782 G2782T G T . . AC=1;AN=1116 +NC_045512v2 2788 C2788T C T . . AC=1;AN=1116 +NC_045512v2 2805 A2805G A G . . AC=1;AN=1116 +NC_045512v2 2815 T2815C T C . . AC=1;AN=1116 +NC_045512v2 2819 G2819T G T . . AC=1;AN=1116 +NC_045512v2 2830 G2830A G A . . AC=1;AN=1116 +NC_045512v2 2836 C2836T C T . . AC=6;AN=1116 +NC_045512v2 2841 C2841T C T . . AC=1;AN=1116 +NC_045512v2 2842 C2842T C T . . AC=1;AN=1116 +NC_045512v2 2845 T2845C T C . . AC=2;AN=1116 +NC_045512v2 2848 A2848G A G . . AC=1;AN=1116 +NC_045512v2 2867 G2867T G T . . AC=1;AN=1116 +NC_045512v2 2869 A2869G A G . . AC=2;AN=1116 +NC_045512v2 2871 A2871C A C . . AC=1;AN=1116 +NC_045512v2 2872 T2872C T C . . AC=1;AN=1116 +NC_045512v2 2878 C2878T C T . . AC=1;AN=1116 +NC_045512v2 2880 C2880T C T . . AC=1;AN=1116 +NC_045512v2 2885 G2885A,G2885T G A,T . . AC=1,1;AN=1116 +NC_045512v2 2898 C2898T C T . . AC=2;AN=1116 +NC_045512v2 2900 G2900T G T . . AC=1;AN=1116 +NC_045512v2 2902 C2902T C T . . AC=1;AN=1116 +NC_045512v2 2903 A2903G A G . . AC=1;AN=1116 +NC_045512v2 2910 C2910T C T . . AC=2;AN=1116 +NC_045512v2 2918 C2918T C T . . AC=1;AN=1116 +NC_045512v2 2919 C2919T C T . . AC=1;AN=1116 +NC_045512v2 2924 T2924C T C . . AC=1;AN=1116 +NC_045512v2 2937 C2937T C T . . AC=2;AN=1116 +NC_045512v2 2939 C2939T C T . . AC=7;AN=1116 +NC_045512v2 2940 C2940T C T . . AC=3;AN=1116 +NC_045512v2 2945 G2945A G A . . AC=2;AN=1116 +NC_045512v2 2947 C2947T C T . . AC=1;AN=1116 +NC_045512v2 2948 A2948G A G . . AC=1;AN=1116 +NC_045512v2 2983 C2983T C T . . AC=1;AN=1116 +NC_045512v2 2995 G2995T G T . . AC=4;AN=1116 +NC_045512v2 3011 T3011C T C . . AC=2;AN=1116 +NC_045512v2 3015 C3015T C T . . AC=1;AN=1116 +NC_045512v2 3037 C3037T C T . . AC=1112;AN=1116 +NC_045512v2 3041 C3041A C A . . AC=1;AN=1116 +NC_045512v2 3044 C3044T C T . . AC=2;AN=1116 +NC_045512v2 3045 C3045T C T . . AC=1;AN=1116 +NC_045512v2 3049 T3049C T C . . AC=3;AN=1116 +NC_045512v2 3056 G3056A G A . . AC=2;AN=1116 +NC_045512v2 3058 A3058G A G . . AC=1;AN=1116 +NC_045512v2 3069 A3069G A G . . AC=1;AN=1116 +NC_045512v2 3080 G3080A G A . . AC=1;AN=1116 +NC_045512v2 3090 A3090T A T . . AC=1;AN=1116 +NC_045512v2 3091 G3091A G A . . AC=1;AN=1116 +NC_045512v2 3093 C3093T C T . . AC=1;AN=1116 +NC_045512v2 3095 T3095C T C . . AC=1;AN=1116 +NC_045512v2 3096 C3096T C T . . AC=4;AN=1116 +NC_045512v2 3099 C3099T C T . . AC=3;AN=1116 +NC_045512v2 3103 A3103C A C . . AC=2;AN=1116 +NC_045512v2 3118 T3118C T C . . AC=2;AN=1116 +NC_045512v2 3120 A3120C A C . . AC=1;AN=1116 +NC_045512v2 3121 A3121C A C . . AC=1;AN=1116 +NC_045512v2 3122 G3122T G T . . AC=1;AN=1116 +NC_045512v2 3127 T3127C T C . . AC=1;AN=1116 +NC_045512v2 3141 C3141A,C3141T C A,T . . AC=1,1;AN=1116 +NC_045512v2 3146 G3146A G A . . AC=1;AN=1116 +NC_045512v2 3152 G3152A G A . . AC=2;AN=1116 +NC_045512v2 3154 T3154C T C . . AC=2;AN=1116 +NC_045512v2 3155 G3155T G T . . AC=1;AN=1116 +NC_045512v2 3163 T3163C T C . . AC=2;AN=1116 +NC_045512v2 3164 G3164T G T . . AC=1;AN=1116 +NC_045512v2 3170 C3170T C T . . AC=2;AN=1116 +NC_045512v2 3177 C3177T C T . . AC=2;AN=1116 +NC_045512v2 3180 A3180G A G . . AC=1;AN=1116 +NC_045512v2 3230 G3230A G A . . AC=3;AN=1116 +NC_045512v2 3231 G3231T G T . . AC=3;AN=1116 +NC_045512v2 3239 G3239A G A . . AC=2;AN=1116 +NC_045512v2 3242 G3242A G A . . AC=3;AN=1116 +NC_045512v2 3250 G3250T G T . . AC=1;AN=1116 +NC_045512v2 3256 T3256C T C . . AC=2;AN=1116 +NC_045512v2 3259 G3259T G T . . AC=6;AN=1116 +NC_045512v2 3260 A3260G A G . . AC=1;AN=1116 +NC_045512v2 3261 C3261T C T . . AC=3;AN=1116 +NC_045512v2 3264 C3264T C T . . AC=2;AN=1116 +NC_045512v2 3267 C3267T C T . . AC=4;AN=1116 +NC_045512v2 3286 G3286A G A . . AC=1;AN=1116 +NC_045512v2 3287 G3287T G T . . AC=1;AN=1116 +NC_045512v2 3302 G3302A G A . . AC=2;AN=1116 +NC_045512v2 3304 G3304T G T . . AC=1;AN=1116 +NC_045512v2 3323 G3323T G T . . AC=2;AN=1116 +NC_045512v2 3334 T3334A T A . . AC=1;AN=1116 +NC_045512v2 3338 G3338T G T . . AC=2;AN=1116 +NC_045512v2 3340 G3340T G T . . AC=1;AN=1116 +NC_045512v2 3366 T3366C T C . . AC=1;AN=1116 +NC_045512v2 3373 C3373A C A . . AC=10;AN=1116 +NC_045512v2 3397 C3397T C T . . AC=1;AN=1116 +NC_045512v2 3403 G3403T G T . . AC=2;AN=1116 +NC_045512v2 3411 C3411T C T . . AC=9;AN=1116 +NC_045512v2 3413 A3413T A T . . AC=1;AN=1116 +NC_045512v2 3419 G3419A G A . . AC=1;AN=1116 +NC_045512v2 3426 C3426T C T . . AC=3;AN=1116 +NC_045512v2 3429 C3429T C T . . AC=2;AN=1116 +NC_045512v2 3431 G3431T G T . . AC=4;AN=1116 +NC_045512v2 3433 G3433A G A . . AC=1;AN=1116 +NC_045512v2 3487 C3487T C T . . AC=2;AN=1116 +NC_045512v2 3496 G3496T G T . . AC=1;AN=1116 +NC_045512v2 3499 T3499C T C . . AC=1;AN=1116 +NC_045512v2 3511 C3511T C T . . AC=2;AN=1116 +NC_045512v2 3527 G3527A G A . . AC=1;AN=1116 +NC_045512v2 3535 C3535T C T . . AC=1;AN=1116 +NC_045512v2 3536 A3536G A G . . AC=1;AN=1116 +NC_045512v2 3587 C3587T C T . . AC=1;AN=1116 +NC_045512v2 3602 C3602T C T . . AC=8;AN=1116 +NC_045512v2 3615 T3615C T C . . AC=2;AN=1116 +NC_045512v2 3616 T3616A T A . . AC=1;AN=1116 +NC_045512v2 3619 C3619T C T . . AC=1;AN=1116 +NC_045512v2 3622 C3622T C T . . AC=3;AN=1116 +NC_045512v2 3634 C3634T C T . . AC=2;AN=1116 +NC_045512v2 3638 G3638A,G3638T G A,T . . AC=1,2;AN=1116 +NC_045512v2 3653 C3653T C T . . AC=1;AN=1116 +NC_045512v2 3689 G3689A G A . . AC=3;AN=1116 +NC_045512v2 3694 T3694C T C . . AC=1;AN=1116 +NC_045512v2 3695 C3695T C T . . AC=1;AN=1116 +NC_045512v2 3698 C3698T C T . . AC=1;AN=1116 +NC_045512v2 3712 A3712G A G . . AC=1;AN=1116 +NC_045512v2 3736 C3736T C T . . AC=4;AN=1116 +NC_045512v2 3737 C3737T C T . . AC=3;AN=1116 +NC_045512v2 3738 C3738T C T . . AC=1;AN=1116 +NC_045512v2 3740 A3740G A G . . AC=1;AN=1116 +NC_045512v2 3745 T3745C T C . . AC=1;AN=1116 +NC_045512v2 3755 G3755T G T . . AC=1;AN=1116 +NC_045512v2 3766 T3766C T C . . AC=1;AN=1116 +NC_045512v2 3768 C3768T C T . . AC=3;AN=1116 +NC_045512v2 3776 A3776G A G . . AC=1;AN=1116 +NC_045512v2 3777 C3777T C T . . AC=1;AN=1116 +NC_045512v2 3801 A3801G A G . . AC=1;AN=1116 +NC_045512v2 3811 C3811T C T . . AC=4;AN=1116 +NC_045512v2 3817 C3817T C T . . AC=2;AN=1116 +NC_045512v2 3828 C3828T C T . . AC=4;AN=1116 +NC_045512v2 3831 G3831A G A . . AC=2;AN=1116 +NC_045512v2 3841 A3841T A T . . AC=1;AN=1116 +NC_045512v2 3843 T3843C T C . . AC=1;AN=1116 +NC_045512v2 3849 G3849A G A . . AC=1;AN=1116 +NC_045512v2 3852 A3852T A T . . AC=2;AN=1116 +NC_045512v2 3867 A3867T A T . . AC=1;AN=1116 +NC_045512v2 3871 G3871T G T . . AC=6;AN=1116 +NC_045512v2 3873 T3873C,T3873G T C,G . . AC=2,1;AN=1116 +NC_045512v2 3874 C3874T C T . . AC=1;AN=1116 +NC_045512v2 3880 G3880A G A . . AC=2;AN=1116 +NC_045512v2 3884 C3884T C T . . AC=2;AN=1116 +NC_045512v2 3885 C3885T C T . . AC=2;AN=1116 +NC_045512v2 3892 G3892T G T . . AC=2;AN=1116 +NC_045512v2 3896 G3896T G T . . AC=2;AN=1116 +NC_045512v2 3939 G3939A G A . . AC=1;AN=1116 +NC_045512v2 3952 T3952C T C . . AC=1;AN=1116 +NC_045512v2 3959 A3959G A G . . AC=2;AN=1116 +NC_045512v2 3961 C3961T C T . . AC=3;AN=1116 +NC_045512v2 3969 G3969A G A . . AC=1;AN=1116 +NC_045512v2 3994 G3994A,G3994T G A,T . . AC=3,1;AN=1116 +NC_045512v2 4002 C4002T C T . . AC=20;AN=1116 +NC_045512v2 4006 G4006T G T . . AC=1;AN=1116 +NC_045512v2 4012 C4012T C T . . AC=1;AN=1116 +NC_045512v2 4033 T4033C T C . . AC=2;AN=1116 +NC_045512v2 4044 A4044C A C . . AC=1;AN=1116 +NC_045512v2 4048 C4048T C T . . AC=3;AN=1116 +NC_045512v2 4057 T4057C T C . . AC=2;AN=1116 +NC_045512v2 4084 C4084T C T . . AC=7;AN=1116 +NC_045512v2 4105 G4105A,G4105T G A,T . . AC=1,1;AN=1116 +NC_045512v2 4113 C4113T C T . . AC=5;AN=1116 +NC_045512v2 4125 T4125C T C . . AC=1;AN=1116 +NC_045512v2 4138 T4138G T G . . AC=1;AN=1116 +NC_045512v2 4143 A4143G A G . . AC=1;AN=1116 +NC_045512v2 4148 G4148T G T . . AC=1;AN=1116 +NC_045512v2 4149 T4149C T C . . AC=2;AN=1116 +NC_045512v2 4158 C4158T C T . . AC=1;AN=1116 +NC_045512v2 4181 G4181T G T . . AC=2;AN=1116 +NC_045512v2 4195 T4195A T A . . AC=2;AN=1116 +NC_045512v2 4197 A4197G A G . . AC=2;AN=1116 +NC_045512v2 4198 A4198C A C . . AC=1;AN=1116 +NC_045512v2 4207 G4207T G T . . AC=3;AN=1116 +NC_045512v2 4208 A4208C A C . . AC=2;AN=1116 +NC_045512v2 4228 A4228G A G . . AC=1;AN=1116 +NC_045512v2 4232 G4232T G T . . AC=1;AN=1116 +NC_045512v2 4255 G4255A,G4255T G A,T . . AC=2,2;AN=1116 +NC_045512v2 4276 C4276T C T . . AC=2;AN=1116 +NC_045512v2 4285 G4285A,G4285T G A,T . . AC=1,1;AN=1116 +NC_045512v2 4300 G4300T G T . . AC=4;AN=1116 +NC_045512v2 4303 T4303C T C . . AC=1;AN=1116 +NC_045512v2 4320 C4320T C T . . AC=3;AN=1116 +NC_045512v2 4321 C4321T C T . . AC=3;AN=1116 +NC_045512v2 4324 T4324G T G . . AC=1;AN=1116 +NC_045512v2 4330 T4330C T C . . AC=1;AN=1116 +NC_045512v2 4331 C4331T C T . . AC=1;AN=1116 +NC_045512v2 4346 T4346C T C . . AC=2;AN=1116 +NC_045512v2 4369 T4369C T C . . AC=2;AN=1116 +NC_045512v2 4372 A4372C A C . . AC=1;AN=1116 +NC_045512v2 4391 C4391A C A . . AC=2;AN=1116 +NC_045512v2 4399 G4399T G T . . AC=1;AN=1116 +NC_045512v2 4414 A4414G A G . . AC=1;AN=1116 +NC_045512v2 4441 T4441C T C . . AC=1;AN=1116 +NC_045512v2 4442 G4442T G T . . AC=3;AN=1116 +NC_045512v2 4455 C4455T C T . . AC=3;AN=1116 +NC_045512v2 4456 C4456T C T . . AC=3;AN=1116 +NC_045512v2 4457 A4457G A G . . AC=2;AN=1116 +NC_045512v2 4459 A4459G A G . . AC=1;AN=1116 +NC_045512v2 4485 A4485G A G . . AC=1;AN=1116 +NC_045512v2 4504 G4504T G T . . AC=2;AN=1116 +NC_045512v2 4508 G4508A G A . . AC=1;AN=1116 +NC_045512v2 4510 G4510A,G4510T G A,T . . AC=4,3;AN=1116 +NC_045512v2 4520 G4520T G T . . AC=2;AN=1116 +NC_045512v2 4534 C4534T C T . . AC=1;AN=1116 +NC_045512v2 4540 C4540T C T . . AC=1;AN=1116 +NC_045512v2 4543 C4543T C T . . AC=7;AN=1116 +NC_045512v2 4551 C4551T C T . . AC=1;AN=1116 +NC_045512v2 4570 C4570A C A . . AC=1;AN=1116 +NC_045512v2 4577 C4577T C T . . AC=1;AN=1116 +NC_045512v2 4579 T4579A T A . . AC=2;AN=1116 +NC_045512v2 4582 C4582T C T . . AC=2;AN=1116 +NC_045512v2 4586 C4586T C T . . AC=2;AN=1116 +NC_045512v2 4587 T4587A T A . . AC=1;AN=1116 +NC_045512v2 4596 C4596A C A . . AC=2;AN=1116 +NC_045512v2 4633 C4633T C T . . AC=2;AN=1116 +NC_045512v2 4655 C4655T C T . . AC=1;AN=1116 +NC_045512v2 4657 G4657T G T . . AC=2;AN=1116 +NC_045512v2 4660 T4660C T C . . AC=1;AN=1116 +NC_045512v2 4672 C4672T C T . . AC=1;AN=1116 +NC_045512v2 4683 C4683T C T . . AC=1;AN=1116 +NC_045512v2 4686 C4686T C T . . AC=1;AN=1116 +NC_045512v2 4698 C4698T C T . . AC=1;AN=1116 +NC_045512v2 4711 T4711C T C . . AC=2;AN=1116 +NC_045512v2 4720 G4720A G A . . AC=1;AN=1116 +NC_045512v2 4754 C4754T C T . . AC=1;AN=1116 +NC_045512v2 4764 A4764G A G . . AC=1;AN=1116 +NC_045512v2 4780 C4780T C T . . AC=1;AN=1116 +NC_045512v2 4784 C4784T C T . . AC=1;AN=1116 +NC_045512v2 4794 C4794T C T . . AC=1;AN=1116 +NC_045512v2 4795 C4795T C T . . AC=2;AN=1116 +NC_045512v2 4809 C4809T C T . . AC=2;AN=1116 +NC_045512v2 4819 A4819G A G . . AC=1;AN=1116 +NC_045512v2 4824 C4824T C T . . AC=1;AN=1116 +NC_045512v2 4838 A4838G A G . . AC=1;AN=1116 +NC_045512v2 4866 G4866T G T . . AC=2;AN=1116 +NC_045512v2 4870 A4870G A G . . AC=1;AN=1116 +NC_045512v2 4871 T4871C T C . . AC=2;AN=1116 +NC_045512v2 4876 C4876T C T . . AC=2;AN=1116 +NC_045512v2 4878 C4878T C T . . AC=3;AN=1116 +NC_045512v2 4886 C4886T C T . . AC=1;AN=1116 +NC_045512v2 4888 T4888A T A . . AC=2;AN=1116 +NC_045512v2 4890 C4890T C T . . AC=1;AN=1116 +NC_045512v2 4891 C4891T C T . . AC=2;AN=1116 +NC_045512v2 4893 C4893T C T . . AC=2;AN=1116 +NC_045512v2 4895 T4895C T C . . AC=1;AN=1116 +NC_045512v2 4897 C4897T C T . . AC=2;AN=1116 +NC_045512v2 4898 C4898T C T . . AC=3;AN=1116 +NC_045512v2 4904 G4904A G A . . AC=2;AN=1116 +NC_045512v2 4918 C4918T C T . . AC=1;AN=1116 +NC_045512v2 4927 C4927T C T . . AC=1;AN=1116 +NC_045512v2 4928 A4928T A T . . AC=1;AN=1116 +NC_045512v2 4935 A4935G A G . . AC=1;AN=1116 +NC_045512v2 4949 T4949C T C . . AC=1;AN=1116 +NC_045512v2 4960 G4960T G T . . AC=5;AN=1116 +NC_045512v2 4965 C4965T C T . . AC=5;AN=1116 +NC_045512v2 4972 G4972A G A . . AC=1;AN=1116 +NC_045512v2 4975 G4975T G T . . AC=1;AN=1116 +NC_045512v2 4999 C4999T C T . . AC=4;AN=1116 +NC_045512v2 5000 C5000T C T . . AC=1;AN=1116 +NC_045512v2 5008 G5008T G T . . AC=2;AN=1116 +NC_045512v2 5015 G5015A G A . . AC=2;AN=1116 +NC_045512v2 5020 C5020T C T . . AC=1;AN=1116 +NC_045512v2 5028 T5028C T C . . AC=1;AN=1116 +NC_045512v2 5029 G5029C G C . . AC=1;AN=1116 +NC_045512v2 5031 C5031T C T . . AC=1;AN=1116 +NC_045512v2 5040 A5040G A G . . AC=2;AN=1116 +NC_045512v2 5059 T5059C T C . . AC=1;AN=1116 +NC_045512v2 5090 C5090T C T . . AC=1;AN=1116 +NC_045512v2 5092 T5092C T C . . AC=1;AN=1116 +NC_045512v2 5101 A5101G A G . . AC=1;AN=1116 +NC_045512v2 5119 T5119C T C . . AC=1;AN=1116 +NC_045512v2 5128 A5128G A G . . AC=1;AN=1116 +NC_045512v2 5140 C5140T C T . . AC=1;AN=1116 +NC_045512v2 5146 A5146G A G . . AC=1;AN=1116 +NC_045512v2 5161 T5161A T A . . AC=1;AN=1116 +NC_045512v2 5170 C5170T C T . . AC=2;AN=1116 +NC_045512v2 5175 C5175T C T . . AC=4;AN=1116 +NC_045512v2 5178 C5178T C T . . AC=1;AN=1116 +NC_045512v2 5182 T5182C T C . . AC=2;AN=1116 +NC_045512v2 5183 C5183T C T . . AC=4;AN=1116 +NC_045512v2 5184 C5184A,C5184T C A,T . . AC=2,2;AN=1116 +NC_045512v2 5192 C5192T C T . . AC=2;AN=1116 +NC_045512v2 5194 G5194T G T . . AC=1;AN=1116 +NC_045512v2 5206 G5206T G T . . AC=2;AN=1116 +NC_045512v2 5221 C5221T C T . . AC=2;AN=1116 +NC_045512v2 5230 G5230T G T . . AC=6;AN=1116 +NC_045512v2 5239 C5239T C T . . AC=1;AN=1116 +NC_045512v2 5240 C5240G C G . . AC=1;AN=1116 +NC_045512v2 5260 T5260A T A . . AC=1;AN=1116 +NC_045512v2 5264 A5264G A G . . AC=2;AN=1116 +NC_045512v2 5277 A5277G A G . . AC=1;AN=1116 +NC_045512v2 5301 C5301T C T . . AC=4;AN=1116 +NC_045512v2 5305 G5305A G A . . AC=1;AN=1116 +NC_045512v2 5310 C5310T C T . . AC=2;AN=1116 +NC_045512v2 5312 C5312T C T . . AC=2;AN=1116 +NC_045512v2 5326 G5326T G T . . AC=2;AN=1116 +NC_045512v2 5329 G5329A G A . . AC=2;AN=1116 +NC_045512v2 5335 T5335C T C . . AC=1;AN=1116 +NC_045512v2 5339 C5339T C T . . AC=2;AN=1116 +NC_045512v2 5347 T5347C T C . . AC=1;AN=1116 +NC_045512v2 5353 A5353G A G . . AC=1;AN=1116 +NC_045512v2 5365 C5365T C T . . AC=3;AN=1116 +NC_045512v2 5368 A5368G A G . . AC=1;AN=1116 +NC_045512v2 5388 C5388A C A . . AC=4;AN=1116 +NC_045512v2 5392 C5392T C T . . AC=1;AN=1116 +NC_045512v2 5416 C5416T C T . . AC=1;AN=1116 +NC_045512v2 5421 A5421G A G . . AC=1;AN=1116 +NC_045512v2 5425 G5425T G T . . AC=2;AN=1116 +NC_045512v2 5452 A5452G A G . . AC=1;AN=1116 +NC_045512v2 5465 T5465C T C . . AC=2;AN=1116 +NC_045512v2 5471 T5471C T C . . AC=1;AN=1116 +NC_045512v2 5482 C5482T C T . . AC=2;AN=1116 +NC_045512v2 5493 C5493T C T . . AC=1;AN=1116 +NC_045512v2 5497 C5497T C T . . AC=1;AN=1116 +NC_045512v2 5504 G5504A G A . . AC=1;AN=1116 +NC_045512v2 5506 C5506T C T . . AC=2;AN=1116 +NC_045512v2 5507 T5507A T A . . AC=2;AN=1116 +NC_045512v2 5538 A5538T A T . . AC=2;AN=1116 +NC_045512v2 5539 G5539A G A . . AC=2;AN=1116 +NC_045512v2 5540 C5540A C A . . AC=1;AN=1116 +NC_045512v2 5544 C5544T C T . . AC=1;AN=1116 +NC_045512v2 5548 C5548T C T . . AC=2;AN=1116 +NC_045512v2 5554 G5554T G T . . AC=2;AN=1116 +NC_045512v2 5572 G5572A,G5572T G A,T . . AC=1,6;AN=1116 +NC_045512v2 5575 C5575T C T . . AC=2;AN=1116 +NC_045512v2 5578 G5578A G A . . AC=1;AN=1116 +NC_045512v2 5585 C5585A C A . . AC=1;AN=1116 +NC_045512v2 5622 C5622T C T . . AC=2;AN=1116 +NC_045512v2 5629 G5629T G T . . AC=6;AN=1116 +NC_045512v2 5648 A5648C A C . . AC=2;AN=1116 +NC_045512v2 5650 A5650G A G . . AC=1;AN=1116 +NC_045512v2 5653 T5653C T C . . AC=2;AN=1116 +NC_045512v2 5674 T5674C T C . . AC=1;AN=1116 +NC_045512v2 5691 C5691T C T . . AC=2;AN=1116 +NC_045512v2 5694 C5694T C T . . AC=2;AN=1116 +NC_045512v2 5695 A5695G A G . . AC=2;AN=1116 +NC_045512v2 5700 C5700A C A . . AC=6;AN=1116 +NC_045512v2 5716 G5716A G A . . AC=2;AN=1116 +NC_045512v2 5717 C5717T C T . . AC=1;AN=1116 +NC_045512v2 5724 C5724T C T . . AC=1;AN=1116 +NC_045512v2 5730 C5730T C T . . AC=4;AN=1116 +NC_045512v2 5747 A5747G A G . . AC=2;AN=1116 +NC_045512v2 5758 C5758T C T . . AC=1;AN=1116 +NC_045512v2 5777 C5777T C T . . AC=1;AN=1116 +NC_045512v2 5780 A5780G A G . . AC=2;AN=1116 +NC_045512v2 5785 T5785A T A . . AC=1;AN=1116 +NC_045512v2 5796 C5796T C T . . AC=2;AN=1116 +NC_045512v2 5806 C5806T C T . . AC=1;AN=1116 +NC_045512v2 5812 C5812T C T . . AC=2;AN=1116 +NC_045512v2 5817 C5817T C T . . AC=1;AN=1116 +NC_045512v2 5829 A5829G A G . . AC=1;AN=1116 +NC_045512v2 5830 G5830A G A . . AC=1;AN=1116 +NC_045512v2 5833 C5833T C T . . AC=1;AN=1116 +NC_045512v2 5855 A5855G A G . . AC=1;AN=1116 +NC_045512v2 5877 A5877G A G . . AC=3;AN=1116 +NC_045512v2 5878 C5878T C T . . AC=1;AN=1116 +NC_045512v2 5884 C5884T C T . . AC=5;AN=1116 +NC_045512v2 5893 C5893T C T . . AC=2;AN=1116 +NC_045512v2 5907 C5907T C T . . AC=3;AN=1116 +NC_045512v2 5924 G5924A G A . . AC=2;AN=1116 +NC_045512v2 5934 C5934T C T . . AC=1;AN=1116 +NC_045512v2 5941 T5941C T C . . AC=2;AN=1116 +NC_045512v2 5950 G5950A,G5950T G A,T . . AC=2,2;AN=1116 +NC_045512v2 5958 A5958G A G . . AC=1;AN=1116 +NC_045512v2 5974 C5974T C T . . AC=1;AN=1116 +NC_045512v2 5979 C5979T C T . . AC=2;AN=1116 +NC_045512v2 5986 C5986T C T . . AC=6;AN=1116 +NC_045512v2 5991 A5991G A G . . AC=1;AN=1116 +NC_045512v2 5999 A5999G A G . . AC=1;AN=1116 +NC_045512v2 6016 C6016T C T . . AC=1;AN=1116 +NC_045512v2 6023 T6023C T C . . AC=1;AN=1116 +NC_045512v2 6025 T6025C T C . . AC=1;AN=1116 +NC_045512v2 6027 C6027T C T . . AC=1;AN=1116 +NC_045512v2 6033 C6033T C T . . AC=1;AN=1116 +NC_045512v2 6035 A6035G A G . . AC=1;AN=1116 +NC_045512v2 6055 T6055C T C . . AC=1;AN=1116 +NC_045512v2 6070 C6070T C T . . AC=2;AN=1116 +NC_045512v2 6077 G6077T G T . . AC=2;AN=1116 +NC_045512v2 6091 C6091T C T . . AC=1;AN=1116 +NC_045512v2 6103 T6103C T C . . AC=1;AN=1116 +NC_045512v2 6114 C6114A,C6114T C A,T . . AC=1,1;AN=1116 +NC_045512v2 6125 G6125A G A . . AC=1;AN=1116 +NC_045512v2 6141 T6141A T A . . AC=1;AN=1116 +NC_045512v2 6190 C6190T C T . . AC=1;AN=1116 +NC_045512v2 6195 C6195T C T . . AC=1;AN=1116 +NC_045512v2 6196 C6196T C T . . AC=2;AN=1116 +NC_045512v2 6268 C6268A,C6268T C A,T . . AC=2,1;AN=1116 +NC_045512v2 6285 C6285T C T . . AC=3;AN=1116 +NC_045512v2 6286 C6286T C T . . AC=54;AN=1116 +NC_045512v2 6288 G6288T G T . . AC=1;AN=1116 +NC_045512v2 6310 C6310T C T . . AC=1;AN=1116 +NC_045512v2 6312 C6312A,C6312T C A,T . . AC=2,2;AN=1116 +NC_045512v2 6317 C6317T C T . . AC=2;AN=1116 +NC_045512v2 6319 A6319G A G . . AC=3;AN=1116 +NC_045512v2 6320 G6320T G T . . AC=1;AN=1116 +NC_045512v2 6336 C6336T C T . . AC=5;AN=1116 +NC_045512v2 6344 G6344T G T . . AC=2;AN=1116 +NC_045512v2 6347 C6347T C T . . AC=1;AN=1116 +NC_045512v2 6351 A6351C A C . . AC=1;AN=1116 +NC_045512v2 6356 G6356A G A . . AC=2;AN=1116 +NC_045512v2 6358 G6358A G A . . AC=1;AN=1116 +NC_045512v2 6360 A6360G A G . . AC=1;AN=1116 +NC_045512v2 6361 C6361T C T . . AC=2;AN=1116 +NC_045512v2 6366 A6366T A T . . AC=1;AN=1116 +NC_045512v2 6375 A6375G A G . . AC=1;AN=1116 +NC_045512v2 6376 T6376A T A . . AC=1;AN=1116 +NC_045512v2 6385 C6385A,C6385T C A,T . . AC=1,1;AN=1116 +NC_045512v2 6387 G6387A G A . . AC=1;AN=1116 +NC_045512v2 6391 A6391G A G . . AC=3;AN=1116 +NC_045512v2 6401 C6401T C T . . AC=5;AN=1116 +NC_045512v2 6402 C6402T C T . . AC=2;AN=1116 +NC_045512v2 6404 G6404T G T . . AC=1;AN=1116 +NC_045512v2 6406 C6406T C T . . AC=2;AN=1116 +NC_045512v2 6407 T6407A T A . . AC=1;AN=1116 +NC_045512v2 6414 A6414G A G . . AC=1;AN=1116 +NC_045512v2 6421 G6421C G C . . AC=1;AN=1116 +NC_045512v2 6441 A6441G A G . . AC=3;AN=1116 +NC_045512v2 6442 A6442G A G . . AC=2;AN=1116 +NC_045512v2 6443 G6443A G A . . AC=1;AN=1116 +NC_045512v2 6445 C6445T C T . . AC=2;AN=1116 +NC_045512v2 6446 G6446T G T . . AC=1;AN=1116 +NC_045512v2 6449 C6449T C T . . AC=3;AN=1116 +NC_045512v2 6461 G6461T G T . . AC=1;AN=1116 +NC_045512v2 6466 A6466G A G . . AC=2;AN=1116 +NC_045512v2 6472 C6472T C T . . AC=2;AN=1116 +NC_045512v2 6476 G6476T G T . . AC=1;AN=1116 +NC_045512v2 6500 C6500T C T . . AC=1;AN=1116 +NC_045512v2 6512 A6512C A C . . AC=2;AN=1116 +NC_045512v2 6525 C6525T C T . . AC=6;AN=1116 +NC_045512v2 6538 C6538T C T . . AC=1;AN=1116 +NC_045512v2 6539 C6539T C T . . AC=2;AN=1116 +NC_045512v2 6541 C6541T C T . . AC=6;AN=1116 +NC_045512v2 6543 C6543T C T . . AC=1;AN=1116 +NC_045512v2 6555 C6555T C T . . AC=1;AN=1116 +NC_045512v2 6558 C6558T C T . . AC=1;AN=1116 +NC_045512v2 6566 G6566T G T . . AC=1;AN=1116 +NC_045512v2 6568 C6568T C T . . AC=2;AN=1116 +NC_045512v2 6573 C6573T C T . . AC=6;AN=1116 +NC_045512v2 6578 C6578T C T . . AC=1;AN=1116 +NC_045512v2 6579 T6579C T C . . AC=1;AN=1116 +NC_045512v2 6582 C6582A,C6582T C A,T . . AC=1,2;AN=1116 +NC_045512v2 6589 G6589A G A . . AC=1;AN=1116 +NC_045512v2 6593 C6593T C T . . AC=1;AN=1116 +NC_045512v2 6606 C6606T C T . . AC=2;AN=1116 +NC_045512v2 6608 A6608G A G . . AC=2;AN=1116 +NC_045512v2 6613 A6613G A G . . AC=2;AN=1116 +NC_045512v2 6616 A6616G A G . . AC=3;AN=1116 +NC_045512v2 6617 G6617T G T . . AC=1;AN=1116 +NC_045512v2 6627 C6627T C T . . AC=4;AN=1116 +NC_045512v2 6628 C6628T C T . . AC=4;AN=1116 +NC_045512v2 6629 C6629T C T . . AC=1;AN=1116 +NC_045512v2 6633 C6633T C T . . AC=2;AN=1116 +NC_045512v2 6636 C6636T C T . . AC=2;AN=1116 +NC_045512v2 6650 G6650T G T . . AC=1;AN=1116 +NC_045512v2 6651 C6651T C T . . AC=1;AN=1116 +NC_045512v2 6659 A6659G A G . . AC=4;AN=1116 +NC_045512v2 6662 G6662A G A . . AC=1;AN=1116 +NC_045512v2 6672 A6672G A G . . AC=1;AN=1116 +NC_045512v2 6673 T6673C T C . . AC=1;AN=1116 +NC_045512v2 6681 C6681T C T . . AC=4;AN=1116 +NC_045512v2 6690 C6690T C T . . AC=1;AN=1116 +NC_045512v2 6696 C6696T C T . . AC=1;AN=1116 +NC_045512v2 6701 C6701T C T . . AC=4;AN=1116 +NC_045512v2 6707 A6707G A G . . AC=1;AN=1116 +NC_045512v2 6709 A6709G A G . . AC=2;AN=1116 +NC_045512v2 6723 C6723T C T . . AC=2;AN=1116 +NC_045512v2 6726 C6726T C T . . AC=2;AN=1116 +NC_045512v2 6730 C6730T C T . . AC=1;AN=1116 +NC_045512v2 6738 C6738T C T . . AC=1;AN=1116 +NC_045512v2 6762 C6762T C T . . AC=1;AN=1116 +NC_045512v2 6781 C6781T C T . . AC=3;AN=1116 +NC_045512v2 6794 C6794T C T . . AC=1;AN=1116 +NC_045512v2 6813 C6813T C T . . AC=1;AN=1116 +NC_045512v2 6843 C6843T C T . . AC=2;AN=1116 +NC_045512v2 6861 C6861T C T . . AC=1;AN=1116 +NC_045512v2 6877 G6877T G T . . AC=1;AN=1116 +NC_045512v2 6883 C6883T C T . . AC=5;AN=1116 +NC_045512v2 6884 G6884A G A . . AC=1;AN=1116 +NC_045512v2 6889 A6889C A C . . AC=2;AN=1116 +NC_045512v2 6892 T6892C T C . . AC=1;AN=1116 +NC_045512v2 6896 C6896T C T . . AC=1;AN=1116 +NC_045512v2 6900 A6900G A G . . AC=2;AN=1116 +NC_045512v2 6905 T6905G T G . . AC=2;AN=1116 +NC_045512v2 6934 T6934C T C . . AC=2;AN=1116 +NC_045512v2 6941 C6941T C T . . AC=6;AN=1116 +NC_045512v2 6949 T6949C T C . . AC=1;AN=1116 +NC_045512v2 6954 T6954C T C . . AC=4;AN=1116 +NC_045512v2 6983 C6983T C T . . AC=2;AN=1116 +NC_045512v2 6989 T6989C T C . . AC=1;AN=1116 +NC_045512v2 6990 C6990T C T . . AC=6;AN=1116 +NC_045512v2 7009 T7009A T A . . AC=1;AN=1116 +NC_045512v2 7011 C7011T C T . . AC=1;AN=1116 +NC_045512v2 7031 A7031G A G . . AC=2;AN=1116 +NC_045512v2 7034 T7034C T C . . AC=1;AN=1116 +NC_045512v2 7037 G7037A,G7037T G A,T . . AC=2,1;AN=1116 +NC_045512v2 7040 A7040T A T . . AC=1;AN=1116 +NC_045512v2 7042 G7042T G T . . AC=6;AN=1116 +NC_045512v2 7081 C7081T C T . . AC=1;AN=1116 +NC_045512v2 7095 C7095T C T . . AC=2;AN=1116 +NC_045512v2 7113 C7113T C T . . AC=2;AN=1116 +NC_045512v2 7132 T7132C T C . . AC=1;AN=1116 +NC_045512v2 7162 C7162T C T . . AC=1;AN=1116 +NC_045512v2 7168 T7168C T C . . AC=1;AN=1116 +NC_045512v2 7169 C7169T C T . . AC=1;AN=1116 +NC_045512v2 7173 C7173T C T . . AC=1;AN=1116 +NC_045512v2 7185 T7185C T C . . AC=1;AN=1116 +NC_045512v2 7200 C7200T C T . . AC=1;AN=1116 +NC_045512v2 7209 A7209G A G . . AC=1;AN=1116 +NC_045512v2 7224 C7224T C T . . AC=1;AN=1116 +NC_045512v2 7258 T7258C T C . . AC=1;AN=1116 +NC_045512v2 7267 C7267T C T . . AC=3;AN=1116 +NC_045512v2 7279 C7279T C T . . AC=3;AN=1116 +NC_045512v2 7291 A7291G A G . . AC=2;AN=1116 +NC_045512v2 7292 T7292C T C . . AC=2;AN=1116 +NC_045512v2 7295 G7295T G T . . AC=2;AN=1116 +NC_045512v2 7303 C7303T C T . . AC=2;AN=1116 +NC_045512v2 7318 C7318T C T . . AC=2;AN=1116 +NC_045512v2 7319 A7319G A G . . AC=1;AN=1116 +NC_045512v2 7320 G7320A G A . . AC=1;AN=1116 +NC_045512v2 7328 G7328T G T . . AC=2;AN=1116 +NC_045512v2 7332 T7332C T C . . AC=2;AN=1116 +NC_045512v2 7360 G7360T G T . . AC=1;AN=1116 +NC_045512v2 7393 G7393T G T . . AC=1;AN=1116 +NC_045512v2 7396 T7396C T C . . AC=1;AN=1116 +NC_045512v2 7405 G7405T G T . . AC=1;AN=1116 +NC_045512v2 7423 C7423T C T . . AC=1;AN=1116 +NC_045512v2 7426 T7426C T C . . AC=1;AN=1116 +NC_045512v2 7438 T7438C T C . . AC=2;AN=1116 +NC_045512v2 7441 T7441C T C . . AC=1;AN=1116 +NC_045512v2 7452 G7452T G T . . AC=1;AN=1116 +NC_045512v2 7471 C7471T C T . . AC=1;AN=1116 +NC_045512v2 7483 A7483G A G . . AC=1;AN=1116 +NC_045512v2 7488 C7488T C T . . AC=1;AN=1116 +NC_045512v2 7504 C7504T C T . . AC=2;AN=1116 +NC_045512v2 7528 C7528T C T . . AC=10;AN=1116 +NC_045512v2 7540 T7540C T C . . AC=3;AN=1116 +NC_045512v2 7549 T7549C T C . . AC=1;AN=1116 +NC_045512v2 7557 G7557A G A . . AC=2;AN=1116 +NC_045512v2 7564 C7564T C T . . AC=3;AN=1116 +NC_045512v2 7582 T7582C T C . . AC=1;AN=1116 +NC_045512v2 7600 C7600T C T . . AC=2;AN=1116 +NC_045512v2 7645 T7645C T C . . AC=1;AN=1116 +NC_045512v2 7675 G7675T G T . . AC=2;AN=1116 +NC_045512v2 7720 C7720T C T . . AC=1;AN=1116 +NC_045512v2 7728 C7728T C T . . AC=3;AN=1116 +NC_045512v2 7732 C7732T C T . . AC=2;AN=1116 +NC_045512v2 7735 C7735T C T . . AC=4;AN=1116 +NC_045512v2 7749 C7749T C T . . AC=1;AN=1116 +NC_045512v2 7761 G7761A G A . . AC=1;AN=1116 +NC_045512v2 7764 C7764T C T . . AC=1;AN=1116 +NC_045512v2 7765 C7765T C T . . AC=9;AN=1116 +NC_045512v2 7767 T7767C T C . . AC=25;AN=1116 +NC_045512v2 7768 C7768T C T . . AC=4;AN=1116 +NC_045512v2 7783 T7783C T C . . AC=2;AN=1116 +NC_045512v2 7792 T7792C T C . . AC=2;AN=1116 +NC_045512v2 7798 G7798T G T . . AC=7;AN=1116 +NC_045512v2 7813 T7813C T C . . AC=1;AN=1116 +NC_045512v2 7814 T7814C T C . . AC=1;AN=1116 +NC_045512v2 7815 C7815T C T . . AC=2;AN=1116 +NC_045512v2 7831 T7831A T A . . AC=2;AN=1116 +NC_045512v2 7834 C7834T C T . . AC=4;AN=1116 +NC_045512v2 7843 C7843T C T . . AC=2;AN=1116 +NC_045512v2 7844 C7844T C T . . AC=3;AN=1116 +NC_045512v2 7851 C7851T C T . . AC=2;AN=1116 +NC_045512v2 7863 A7863G A G . . AC=1;AN=1116 +NC_045512v2 7869 C7869T C T . . AC=1;AN=1116 +NC_045512v2 7884 T7884C T C . . AC=1;AN=1116 +NC_045512v2 7919 T7919G T G . . AC=2;AN=1116 +NC_045512v2 7932 C7932T C T . . AC=1;AN=1116 +NC_045512v2 7936 G7936A,G7936T G A,T . . AC=1,3;AN=1116 +NC_045512v2 7945 C7945T C T . . AC=1;AN=1116 +NC_045512v2 7954 G7954T G T . . AC=4;AN=1116 +NC_045512v2 7955 C7955T C T . . AC=1;AN=1116 +NC_045512v2 8008 T8008C T C . . AC=1;AN=1116 +NC_045512v2 8015 G8015A G A . . AC=1;AN=1116 +NC_045512v2 8016 C8016T C T . . AC=1;AN=1116 +NC_045512v2 8017 G8017T G T . . AC=3;AN=1116 +NC_045512v2 8025 C8025T C T . . AC=2;AN=1116 +NC_045512v2 8031 A8031G A G . . AC=3;AN=1116 +NC_045512v2 8040 A8040G A G . . AC=1;AN=1116 +NC_045512v2 8041 T8041C T C . . AC=2;AN=1116 +NC_045512v2 8047 C8047T C T . . AC=25;AN=1116 +NC_045512v2 8072 A8072G A G . . AC=4;AN=1116 +NC_045512v2 8082 T8082C T C . . AC=1;AN=1116 +NC_045512v2 8084 G8084A G A . . AC=1;AN=1116 +NC_045512v2 8092 C8092T C T . . AC=1;AN=1116 +NC_045512v2 8102 G8102T G T . . AC=1;AN=1116 +NC_045512v2 8109 C8109T C T . . AC=1;AN=1116 +NC_045512v2 8110 T8110C T C . . AC=2;AN=1116 +NC_045512v2 8114 G8114A G A . . AC=1;AN=1116 +NC_045512v2 8120 G8120C G C . . AC=2;AN=1116 +NC_045512v2 8131 G8131T G T . . AC=3;AN=1116 +NC_045512v2 8133 A8133G A G . . AC=1;AN=1116 +NC_045512v2 8139 C8139T C T . . AC=2;AN=1116 +NC_045512v2 8140 C8140T C T . . AC=2;AN=1116 +NC_045512v2 8171 G8171A G A . . AC=1;AN=1116 +NC_045512v2 8179 G8179T G T . . AC=2;AN=1116 +NC_045512v2 8208 C8208T C T . . AC=1;AN=1116 +NC_045512v2 8213 G8213A G A . . AC=1;AN=1116 +NC_045512v2 8233 A8233G A G . . AC=1;AN=1116 +NC_045512v2 8240 C8240T C T . . AC=2;AN=1116 +NC_045512v2 8244 A8244G A G . . AC=2;AN=1116 +NC_045512v2 8252 A8252G A G . . AC=2;AN=1116 +NC_045512v2 8264 G8264T G T . . AC=1;AN=1116 +NC_045512v2 8290 C8290T C T . . AC=5;AN=1116 +NC_045512v2 8293 C8293T C T . . AC=3;AN=1116 +NC_045512v2 8296 T8296C T C . . AC=2;AN=1116 +NC_045512v2 8299 C8299T C T . . AC=1;AN=1116 +NC_045512v2 8318 C8318A C A . . AC=1;AN=1116 +NC_045512v2 8320 C8320T C T . . AC=2;AN=1116 +NC_045512v2 8323 T8323C T C . . AC=2;AN=1116 +NC_045512v2 8326 C8326T C T . . AC=2;AN=1116 +NC_045512v2 8327 C8327T C T . . AC=2;AN=1116 +NC_045512v2 8334 C8334T C T . . AC=2;AN=1116 +NC_045512v2 8357 C8357T C T . . AC=1;AN=1116 +NC_045512v2 8371 G8371A,G8371T G A,T . . AC=1,8;AN=1116 +NC_045512v2 8374 A8374T A T . . AC=1;AN=1116 +NC_045512v2 8389 C8389T C T . . AC=11;AN=1116 +NC_045512v2 8390 A8390G A G . . AC=1;AN=1116 +NC_045512v2 8394 C8394T C T . . AC=1;AN=1116 +NC_045512v2 8408 G8408A G A . . AC=2;AN=1116 +NC_045512v2 8410 T8410C T C . . AC=2;AN=1116 +NC_045512v2 8413 A8413G A G . . AC=1;AN=1116 +NC_045512v2 8416 T8416C T C . . AC=1;AN=1116 +NC_045512v2 8559 T8559A T A . . AC=1;AN=1116 +NC_045512v2 8561 G8561A G A . . AC=1;AN=1116 +NC_045512v2 8565 A8565C A C . . AC=1;AN=1116 +NC_045512v2 8578 G8578A,G8578T G A,T . . AC=1,2;AN=1116 +NC_045512v2 8591 G8591T G T . . AC=1;AN=1116 +NC_045512v2 8593 T8593C T C . . AC=2;AN=1116 +NC_045512v2 8603 T8603C T C . . AC=2;AN=1116 +NC_045512v2 8605 C8605T C T . . AC=1;AN=1116 +NC_045512v2 8618 G8618A G A . . AC=2;AN=1116 +NC_045512v2 8626 C8626T C T . . AC=1;AN=1116 +NC_045512v2 8634 T8634C T C . . AC=1;AN=1116 +NC_045512v2 8637 C8637T C T . . AC=1;AN=1116 +NC_045512v2 8650 C8650T C T . . AC=1;AN=1116 +NC_045512v2 8655 C8655T C T . . AC=1;AN=1116 +NC_045512v2 8662 T8662C T C . . AC=1;AN=1116 +NC_045512v2 8664 C8664A,C8664T C A,T . . AC=1,2;AN=1116 +NC_045512v2 8681 A8681G A G . . AC=1;AN=1116 +NC_045512v2 8683 C8683T C T . . AC=5;AN=1116 +NC_045512v2 8697 C8697T C T . . AC=1;AN=1116 +NC_045512v2 8733 C8733T C T . . AC=2;AN=1116 +NC_045512v2 8734 A8734G A G . . AC=1;AN=1116 +NC_045512v2 8752 C8752T C T . . AC=1;AN=1116 +NC_045512v2 8773 A8773G A G . . AC=2;AN=1116 +NC_045512v2 8788 T8788C T C . . AC=2;AN=1116 +NC_045512v2 8800 T8800C T C . . AC=2;AN=1116 +NC_045512v2 8802 C8802T C T . . AC=1;AN=1116 +NC_045512v2 8814 C8814T C T . . AC=1;AN=1116 +NC_045512v2 8818 C8818T C T . . AC=3;AN=1116 +NC_045512v2 8851 G8851A G A . . AC=1;AN=1116 +NC_045512v2 8861 G8861T G T . . AC=2;AN=1116 +NC_045512v2 8884 A8884G A G . . AC=2;AN=1116 +NC_045512v2 8895 C8895T C T . . AC=1;AN=1116 +NC_045512v2 8905 C8905T C T . . AC=1;AN=1116 +NC_045512v2 8917 C8917T C T . . AC=6;AN=1116 +NC_045512v2 8941 T8941C T C . . AC=1;AN=1116 +NC_045512v2 8944 T8944C T C . . AC=1;AN=1116 +NC_045512v2 8947 C8947T C T . . AC=2;AN=1116 +NC_045512v2 8950 C8950T C T . . AC=2;AN=1116 +NC_045512v2 8956 C8956T C T . . AC=1;AN=1116 +NC_045512v2 8964 C8964T C T . . AC=1;AN=1116 +NC_045512v2 8983 T8983G T G . . AC=2;AN=1116 +NC_045512v2 8986 C8986T C T . . AC=2;AN=1116 +NC_045512v2 8991 C8991T C T . . AC=2;AN=1116 +NC_045512v2 8993 A8993G A G . . AC=1;AN=1116 +NC_045512v2 9024 C9024T C T . . AC=1;AN=1116 +NC_045512v2 9049 G9049T G T . . AC=2;AN=1116 +NC_045512v2 9070 T9070C T C . . AC=3;AN=1116 +NC_045512v2 9072 C9072T C T . . AC=1;AN=1116 +NC_045512v2 9073 C9073T C T . . AC=1;AN=1116 +NC_045512v2 9092 G9092A G A . . AC=1;AN=1116 +NC_045512v2 9107 T9107C T C . . AC=2;AN=1116 +NC_045512v2 9111 G9111A G A . . AC=1;AN=1116 +NC_045512v2 9112 C9112T C T . . AC=1;AN=1116 +NC_045512v2 9118 C9118T C T . . AC=1;AN=1116 +NC_045512v2 9120 C9120T C T . . AC=4;AN=1116 +NC_045512v2 9130 G9130A,G9130T G A,T . . AC=1,3;AN=1116 +NC_045512v2 9142 C9142T C T . . AC=1;AN=1116 +NC_045512v2 9151 T9151C T C . . AC=2;AN=1116 +NC_045512v2 9165 C9165T C T . . AC=2;AN=1116 +NC_045512v2 9172 T9172C T C . . AC=2;AN=1116 +NC_045512v2 9190 G9190T G T . . AC=3;AN=1116 +NC_045512v2 9195 C9195T C T . . AC=1;AN=1116 +NC_045512v2 9204 A9204G A G . . AC=3;AN=1116 +NC_045512v2 9207 C9207T C T . . AC=1;AN=1116 +NC_045512v2 9220 G9220A G A . . AC=1;AN=1116 +NC_045512v2 9226 C9226T C T . . AC=1;AN=1116 +NC_045512v2 9246 C9246T C T . . AC=3;AN=1116 +NC_045512v2 9272 A9272C A C . . AC=1;AN=1116 +NC_045512v2 9278 G9278A G A . . AC=1;AN=1116 +NC_045512v2 9286 C9286T C T . . AC=8;AN=1116 +NC_045512v2 9292 T9292C T C . . AC=1;AN=1116 +NC_045512v2 9298 C9298T C T . . AC=3;AN=1116 +NC_045512v2 9314 G9314A G A . . AC=1;AN=1116 +NC_045512v2 9319 C9319T C T . . AC=1;AN=1116 +NC_045512v2 9337 A9337G A G . . AC=2;AN=1116 +NC_045512v2 9344 C9344T C T . . AC=2;AN=1116 +NC_045512v2 9360 C9360T C T . . AC=2;AN=1116 +NC_045512v2 9361 A9361T A T . . AC=1;AN=1116 +NC_045512v2 9379 T9379A T A . . AC=1;AN=1116 +NC_045512v2 9389 G9389A G A . . AC=2;AN=1116 +NC_045512v2 9397 A9397G A G . . AC=1;AN=1116 +NC_045512v2 9398 G9398T G T . . AC=1;AN=1116 +NC_045512v2 9409 A9409G A G . . AC=1;AN=1116 +NC_045512v2 9425 G9425T G T . . AC=1;AN=1116 +NC_045512v2 9430 C9430T C T . . AC=11;AN=1116 +NC_045512v2 9433 A9433T A T . . AC=1;AN=1116 +NC_045512v2 9436 A9436T A T . . AC=1;AN=1116 +NC_045512v2 9438 C9438T C T . . AC=6;AN=1116 +NC_045512v2 9448 C9448T C T . . AC=1;AN=1116 +NC_045512v2 9474 C9474T C T . . AC=1;AN=1116 +NC_045512v2 9485 T9485C T C . . AC=1;AN=1116 +NC_045512v2 9491 C9491T C T . . AC=1;AN=1116 +NC_045512v2 9492 A9492C A C . . AC=1;AN=1116 +NC_045512v2 9510 C9510T C T . . AC=1;AN=1116 +NC_045512v2 9521 C9521A C A . . AC=2;AN=1116 +NC_045512v2 9526 G9526T G T . . AC=7;AN=1116 +NC_045512v2 9559 C9559T C T . . AC=2;AN=1116 +NC_045512v2 9561 C9561T C T . . AC=2;AN=1116 +NC_045512v2 9565 C9565T C T . . AC=1;AN=1116 +NC_045512v2 9575 G9575A G A . . AC=1;AN=1116 +NC_045512v2 9650 A9650G A G . . AC=1;AN=1116 +NC_045512v2 9651 T9651G T G . . AC=1;AN=1116 +NC_045512v2 9655 T9655C T C . . AC=1;AN=1116 +NC_045512v2 9658 G9658T G T . . AC=1;AN=1116 +NC_045512v2 9693 C9693T C T . . AC=6;AN=1116 +NC_045512v2 9694 T9694C T C . . AC=1;AN=1116 +NC_045512v2 9697 T9697C T C . . AC=2;AN=1116 +NC_045512v2 9705 G9705T G T . . AC=2;AN=1116 +NC_045512v2 9708 T9708C T C . . AC=1;AN=1116 +NC_045512v2 9737 A9737G A G . . AC=1;AN=1116 +NC_045512v2 9738 G9738C G C . . AC=2;AN=1116 +NC_045512v2 9742 T9742C T C . . AC=2;AN=1116 +NC_045512v2 9745 C9745T C T . . AC=1;AN=1116 +NC_045512v2 9802 G9802T G T . . AC=2;AN=1116 +NC_045512v2 9803 C9803A,C9803T C A,T . . AC=2,2;AN=1116 +NC_045512v2 9805 G9805T G T . . AC=1;AN=1116 +NC_045512v2 9811 C9811T C T . . AC=1;AN=1116 +NC_045512v2 9830 A9830G A G . . AC=1;AN=1116 +NC_045512v2 9857 C9857A,C9857T C A,T . . AC=1,2;AN=1116 +NC_045512v2 9859 A9859G A G . . AC=1;AN=1116 +NC_045512v2 9891 C9891T C T . . AC=3;AN=1116 +NC_045512v2 9907 C9907T C T . . AC=2;AN=1116 +NC_045512v2 9924 C9924T C T . . AC=3;AN=1116 +NC_045512v2 9928 G9928T G T . . AC=4;AN=1116 +NC_045512v2 9935 A9935G A G . . AC=1;AN=1116 +NC_045512v2 9967 C9967T C T . . AC=5;AN=1116 +NC_045512v2 9968 G9968T G T . . AC=2;AN=1116 +NC_045512v2 9979 C9979T C T . . AC=3;AN=1116 +NC_045512v2 9984 A9984C A C . . AC=3;AN=1116 +NC_045512v2 9996 C9996T C T . . AC=1;AN=1116 +NC_045512v2 9997 A9997C A C . . AC=1;AN=1116 +NC_045512v2 10029 C10029T C T . . AC=1;AN=1116 +NC_045512v2 10039 C10039A C A . . AC=1;AN=1116 +NC_045512v2 10074 C10074T C T . . AC=1;AN=1116 +NC_045512v2 10078 C10078T C T . . AC=2;AN=1116 +NC_045512v2 10096 G10096A G A . . AC=1;AN=1116 +NC_045512v2 10097 G10097A G A . . AC=20;AN=1116 +NC_045512v2 10116 C10116T C T . . AC=4;AN=1116 +NC_045512v2 10128 C10128T C T . . AC=1;AN=1116 +NC_045512v2 10138 C10138T C T . . AC=1;AN=1116 +NC_045512v2 10156 C10156T C T . . AC=3;AN=1116 +NC_045512v2 10190 T10190C T C . . AC=1;AN=1116 +NC_045512v2 10200 T10200C T C . . AC=2;AN=1116 +NC_045512v2 10228 C10228T C T . . AC=2;AN=1116 +NC_045512v2 10248 A10248G A G . . AC=1;AN=1116 +NC_045512v2 10249 T10249C T C . . AC=1;AN=1116 +NC_045512v2 10252 C10252T C T . . AC=4;AN=1116 +NC_045512v2 10255 G10255T G T . . AC=1;AN=1116 +NC_045512v2 10260 A10260G A G . . AC=2;AN=1116 +NC_045512v2 10262 G10262A G A . . AC=2;AN=1116 +NC_045512v2 10265 G10265A G A . . AC=8;AN=1116 +NC_045512v2 10277 C10277T C T . . AC=2;AN=1116 +NC_045512v2 10279 C10279T C T . . AC=4;AN=1116 +NC_045512v2 10286 A10286G A G . . AC=2;AN=1116 +NC_045512v2 10288 T10288C T C . . AC=1;AN=1116 +NC_045512v2 10296 C10296T C T . . AC=1;AN=1116 +NC_045512v2 10301 C10301A C A . . AC=2;AN=1116 +NC_045512v2 10319 C10319T C T . . AC=3;AN=1116 +NC_045512v2 10321 T10321C T C . . AC=1;AN=1116 +NC_045512v2 10323 A10323G A G . . AC=14;AN=1116 +NC_045512v2 10324 G10324T G T . . AC=1;AN=1116 +NC_045512v2 10335 C10335T C T . . AC=1;AN=1116 +NC_045512v2 10341 C10341T C T . . AC=1;AN=1116 +NC_045512v2 10350 C10350T C T . . AC=1;AN=1116 +NC_045512v2 10369 C10369T C T . . AC=9;AN=1116 +NC_045512v2 10376 C10376T C T . . AC=8;AN=1116 +NC_045512v2 10377 C10377T C T . . AC=1;AN=1116 +NC_045512v2 10399 A10399G A G . . AC=2;AN=1116 +NC_045512v2 10408 C10408T C T . . AC=1;AN=1116 +NC_045512v2 10417 A10417G A G . . AC=1;AN=1116 +NC_045512v2 10440 C10440T C T . . AC=5;AN=1116 +NC_045512v2 10448 C10448T C T . . AC=1;AN=1116 +NC_045512v2 10450 C10450T C T . . AC=2;AN=1116 +NC_045512v2 10456 C10456T C T . . AC=2;AN=1116 +NC_045512v2 10458 C10458T C T . . AC=2;AN=1116 +NC_045512v2 10474 C10474T C T . . AC=1;AN=1116 +NC_045512v2 10480 T10480C T C . . AC=1;AN=1116 +NC_045512v2 10507 C10507T C T . . AC=5;AN=1116 +NC_045512v2 10513 T10513C T C . . AC=2;AN=1116 +NC_045512v2 10523 G10523C G C . . AC=1;AN=1116 +NC_045512v2 10525 C10525T C T . . AC=2;AN=1116 +NC_045512v2 10540 G10540A G A . . AC=1;AN=1116 +NC_045512v2 10552 A10552G A G . . AC=2;AN=1116 +NC_045512v2 10561 T10561C T C . . AC=2;AN=1116 +NC_045512v2 10565 G10565A G A . . AC=1;AN=1116 +NC_045512v2 10582 C10582T C T . . AC=6;AN=1116 +NC_045512v2 10594 C10594T C T . . AC=2;AN=1116 +NC_045512v2 10615 C10615T C T . . AC=2;AN=1116 +NC_045512v2 10626 C10626T C T . . AC=3;AN=1116 +NC_045512v2 10631 G10631T G T . . AC=2;AN=1116 +NC_045512v2 10641 C10641T C T . . AC=2;AN=1116 +NC_045512v2 10645 C10645T C T . . AC=1;AN=1116 +NC_045512v2 10667 T10667G T G . . AC=2;AN=1116 +NC_045512v2 10681 C10681T C T . . AC=1;AN=1116 +NC_045512v2 10688 G10688T G T . . AC=2;AN=1116 +NC_045512v2 10702 C10702T C T . . AC=1;AN=1116 +NC_045512v2 10705 G10705T G T . . AC=2;AN=1116 +NC_045512v2 10712 C10712T C T . . AC=2;AN=1116 +NC_045512v2 10720 A10720G A G . . AC=2;AN=1116 +NC_045512v2 10724 A10724G A G . . AC=1;AN=1116 +NC_045512v2 10732 T10732C T C . . AC=1;AN=1116 +NC_045512v2 10741 C10741T C T . . AC=1;AN=1116 +NC_045512v2 10747 C10747T C T . . AC=2;AN=1116 +NC_045512v2 10753 G10753A G A . . AC=2;AN=1116 +NC_045512v2 10755 C10755T C T . . AC=2;AN=1116 +NC_045512v2 10759 G10759T G T . . AC=1;AN=1116 +NC_045512v2 10770 A10770G A G . . AC=1;AN=1116 +NC_045512v2 10771 T10771C T C . . AC=1;AN=1116 +NC_045512v2 10781 A10781G A G . . AC=1;AN=1116 +NC_045512v2 10786 A10786G A G . . AC=2;AN=1116 +NC_045512v2 10789 C10789T C T . . AC=2;AN=1116 +NC_045512v2 10793 G10793T G T . . AC=2;AN=1116 +NC_045512v2 10795 T10795C T C . . AC=2;AN=1116 +NC_045512v2 10815 C10815T C T . . AC=2;AN=1116 +NC_045512v2 10818 C10818T C T . . AC=1;AN=1116 +NC_045512v2 10833 C10833T C T . . AC=4;AN=1116 +NC_045512v2 10851 C10851T C T . . AC=2;AN=1116 +NC_045512v2 10868 C10868T C T . . AC=2;AN=1116 +NC_045512v2 10870 G10870T G T . . AC=5;AN=1116 +NC_045512v2 10874 A10874G A G . . AC=3;AN=1116 +NC_045512v2 10880 A10880G A G . . AC=2;AN=1116 +NC_045512v2 10886 G10886A G A . . AC=2;AN=1116 +NC_045512v2 10902 G10902A G A . . AC=2;AN=1116 +NC_045512v2 10904 A10904G A G . . AC=2;AN=1116 +NC_045512v2 10912 A10912G A G . . AC=1;AN=1116 +NC_045512v2 10939 T10939C T C . . AC=1;AN=1116 +NC_045512v2 10948 A10948G A G . . AC=4;AN=1116 +NC_045512v2 10956 C10956T C T . . AC=1;AN=1116 +NC_045512v2 10960 T10960C T C . . AC=1;AN=1116 +NC_045512v2 10963 T10963A T A . . AC=1;AN=1116 +NC_045512v2 10969 C10969T C T . . AC=1;AN=1116 +NC_045512v2 10977 C10977T C T . . AC=1;AN=1116 +NC_045512v2 10978 A10978T A T . . AC=5;AN=1116 +NC_045512v2 10996 G10996T G T . . AC=1;AN=1116 +NC_045512v2 11003 C11003T C T . . AC=3;AN=1116 +NC_045512v2 11005 C11005A C A . . AC=1;AN=1116 +NC_045512v2 11008 C11008T C T . . AC=1;AN=1116 +NC_045512v2 11020 C11020T C T . . AC=1;AN=1116 +NC_045512v2 11023 A11023G A G . . AC=1;AN=1116 +NC_045512v2 11050 C11050A C A . . AC=2;AN=1116 +NC_045512v2 11061 A11061G A G . . AC=2;AN=1116 +NC_045512v2 11078 T11078C T C . . AC=1;AN=1116 +NC_045512v2 11095 C11095T C T . . AC=1;AN=1116 +NC_045512v2 11102 C11102T C T . . AC=3;AN=1116 +NC_045512v2 11109 C11109T C T . . AC=6;AN=1116 +NC_045512v2 11113 G11113A G A . . AC=1;AN=1116 +NC_045512v2 11120 A11120G A G . . AC=2;AN=1116 +NC_045512v2 11131 T11131A T A . . AC=1;AN=1116 +NC_045512v2 11132 G11132T G T . . AC=2;AN=1116 +NC_045512v2 11146 G11146T G T . . AC=1;AN=1116 +NC_045512v2 11152 C11152T C T . . AC=1;AN=1116 +NC_045512v2 11164 T11164G T G . . AC=1;AN=1116 +NC_045512v2 11195 C11195T C T . . AC=1;AN=1116 +NC_045512v2 11221 G11221T G T . . AC=2;AN=1116 +NC_045512v2 11224 C11224T C T . . AC=1;AN=1116 +NC_045512v2 11230 G11230T G T . . AC=5;AN=1116 +NC_045512v2 11243 G11243T G T . . AC=2;AN=1116 +NC_045512v2 11246 A11246T A T . . AC=2;AN=1116 +NC_045512v2 11259 C11259T C T . . AC=3;AN=1116 +NC_045512v2 11266 G11266A G A . . AC=2;AN=1116 +NC_045512v2 11273 G11273A G A . . AC=1;AN=1116 +NC_045512v2 11305 A11305G A G . . AC=1;AN=1116 +NC_045512v2 11308 C11308T C T . . AC=4;AN=1116 +NC_045512v2 11310 G11310A G A . . AC=1;AN=1116 +NC_045512v2 11339 C11339T C T . . AC=1;AN=1116 +NC_045512v2 11345 C11345T C T . . AC=1;AN=1116 +NC_045512v2 11348 A11348G A G . . AC=2;AN=1116 +NC_045512v2 11365 G11365A G A . . AC=2;AN=1116 +NC_045512v2 11379 C11379T C T . . AC=2;AN=1116 +NC_045512v2 11396 C11396A,C11396T C A,T . . AC=1,1;AN=1116 +NC_045512v2 11401 G11401T G T . . AC=2;AN=1116 +NC_045512v2 11417 G11417T G T . . AC=8;AN=1116 +NC_045512v2 11425 A11425T A T . . AC=1;AN=1116 +NC_045512v2 11430 A11430G A G . . AC=2;AN=1116 +NC_045512v2 11438 A11438G A G . . AC=1;AN=1116 +NC_045512v2 11447 G11447A G A . . AC=2;AN=1116 +NC_045512v2 11449 T11449C T C . . AC=1;AN=1116 +NC_045512v2 11460 C11460T C T . . AC=1;AN=1116 +NC_045512v2 11490 C11490T C T . . AC=1;AN=1116 +NC_045512v2 11494 C11494T C T . . AC=2;AN=1116 +NC_045512v2 11497 C11497T C T . . AC=6;AN=1116 +NC_045512v2 11514 C11514T C T . . AC=2;AN=1116 +NC_045512v2 11521 G11521T G T . . AC=2;AN=1116 +NC_045512v2 11522 T11522G T G . . AC=1;AN=1116 +NC_045512v2 11540 G11540T G T . . AC=1;AN=1116 +NC_045512v2 11546 A11546G A G . . AC=1;AN=1116 +NC_045512v2 11552 G11552T G T . . AC=1;AN=1116 +NC_045512v2 11572 C11572T C T . . AC=3;AN=1116 +NC_045512v2 11575 C11575T C T . . AC=2;AN=1116 +NC_045512v2 11596 G11596T G T . . AC=4;AN=1116 +NC_045512v2 11620 C11620T C T . . AC=4;AN=1116 +NC_045512v2 11638 T11638C T C . . AC=2;AN=1116 +NC_045512v2 11654 T11654C T C . . AC=1;AN=1116 +NC_045512v2 11660 T11660A T A . . AC=1;AN=1116 +NC_045512v2 11670 G11670A G A . . AC=1;AN=1116 +NC_045512v2 11693 G11693T G T . . AC=1;AN=1116 +NC_045512v2 11698 T11698C T C . . AC=1;AN=1116 +NC_045512v2 11708 G11708A G A . . AC=1;AN=1116 +NC_045512v2 11714 A11714G A G . . AC=1;AN=1116 +NC_045512v2 11730 A11730G A G . . AC=1;AN=1116 +NC_045512v2 11740 A11740T A T . . AC=1;AN=1116 +NC_045512v2 11747 C11747T C T . . AC=5;AN=1116 +NC_045512v2 11750 C11750T C T . . AC=2;AN=1116 +NC_045512v2 11757 C11757T C T . . AC=1;AN=1116 +NC_045512v2 11758 C11758T C T . . AC=8;AN=1116 +NC_045512v2 11761 G11761T G T . . AC=5;AN=1116 +NC_045512v2 11764 T11764C T C . . AC=2;AN=1116 +NC_045512v2 11767 C11767T C T . . AC=1;AN=1116 +NC_045512v2 11781 A11781G A G . . AC=2;AN=1116 +NC_045512v2 11782 A11782G A G . . AC=6;AN=1116 +NC_045512v2 11783 C11783A C A . . AC=1;AN=1116 +NC_045512v2 11801 G11801A G A . . AC=2;AN=1116 +NC_045512v2 11824 C11824T C T . . AC=4;AN=1116 +NC_045512v2 11837 G11837T G T . . AC=1;AN=1116 +NC_045512v2 11839 A11839G A G . . AC=2;AN=1116 +NC_045512v2 11842 G11842A,G11842T G A,T . . AC=2,2;AN=1116 +NC_045512v2 11851 G11851T G T . . AC=2;AN=1116 +NC_045512v2 11857 T11857C T C . . AC=1;AN=1116 +NC_045512v2 11866 C11866T C T . . AC=2;AN=1116 +NC_045512v2 11869 A11869G A G . . AC=2;AN=1116 +NC_045512v2 11916 C11916T C T . . AC=37;AN=1116 +NC_045512v2 11919 C11919T C T . . AC=2;AN=1116 +NC_045512v2 11923 A11923G A G . . AC=1;AN=1116 +NC_045512v2 11926 G11926A G A . . AC=1;AN=1116 +NC_045512v2 11934 A11934T A T . . AC=1;AN=1116 +NC_045512v2 11941 C11941T C T . . AC=1;AN=1116 +NC_045512v2 11962 C11962T C T . . AC=1;AN=1116 +NC_045512v2 12025 C12025T C T . . AC=1;AN=1116 +NC_045512v2 12031 G12031A G A . . AC=1;AN=1116 +NC_045512v2 12043 C12043T C T . . AC=2;AN=1116 +NC_045512v2 12049 C12049T C T . . AC=1;AN=1116 +NC_045512v2 12053 C12053T C T . . AC=4;AN=1116 +NC_045512v2 12067 G12067T G T . . AC=2;AN=1116 +NC_045512v2 12073 C12073T C T . . AC=1;AN=1116 +NC_045512v2 12075 A12075G A G . . AC=2;AN=1116 +NC_045512v2 12076 C12076T C T . . AC=2;AN=1116 +NC_045512v2 12079 G12079C G C . . AC=1;AN=1116 +NC_045512v2 12085 C12085T C T . . AC=1;AN=1116 +NC_045512v2 12100 C12100T C T . . AC=2;AN=1116 +NC_045512v2 12115 C12115T C T . . AC=1;AN=1116 +NC_045512v2 12116 C12116T C T . . AC=2;AN=1116 +NC_045512v2 12130 A12130G A G . . AC=1;AN=1116 +NC_045512v2 12132 C12132T C T . . AC=1;AN=1116 +NC_045512v2 12134 T12134C T C . . AC=1;AN=1116 +NC_045512v2 12148 A12148G A G . . AC=1;AN=1116 +NC_045512v2 12160 G12160T G T . . AC=1;AN=1116 +NC_045512v2 12171 C12171T C T . . AC=2;AN=1116 +NC_045512v2 12174 A12174G A G . . AC=1;AN=1116 +NC_045512v2 12191 G12191T G T . . AC=6;AN=1116 +NC_045512v2 12194 C12194T C T . . AC=2;AN=1116 +NC_045512v2 12197 A12197C A C . . AC=1;AN=1116 +NC_045512v2 12202 G12202T G T . . AC=2;AN=1116 +NC_045512v2 12213 C12213T C T . . AC=1;AN=1116 +NC_045512v2 12225 C12225T C T . . AC=1;AN=1116 +NC_045512v2 12226 T12226C T C . . AC=2;AN=1116 +NC_045512v2 12242 C12242T C T . . AC=2;AN=1116 +NC_045512v2 12249 C12249T C T . . AC=3;AN=1116 +NC_045512v2 12294 C12294T C T . . AC=2;AN=1116 +NC_045512v2 12302 T12302C T C . . AC=1;AN=1116 +NC_045512v2 12311 G12311T G T . . AC=1;AN=1116 +NC_045512v2 12312 C12312T C T . . AC=2;AN=1116 +NC_045512v2 12357 C12357T C T . . AC=1;AN=1116 +NC_045512v2 12358 A12358T A T . . AC=1;AN=1116 +NC_045512v2 12374 C12374T C T . . AC=4;AN=1116 +NC_045512v2 12400 C12400T C T . . AC=3;AN=1116 +NC_045512v2 12406 C12406T C T . . AC=1;AN=1116 +NC_045512v2 12439 C12439T C T . . AC=1;AN=1116 +NC_045512v2 12459 C12459T C T . . AC=1;AN=1116 +NC_045512v2 12473 C12473T C T . . AC=2;AN=1116 +NC_045512v2 12488 C12488T C T . . AC=4;AN=1116 +NC_045512v2 12513 C12513T C T . . AC=6;AN=1116 +NC_045512v2 12514 G12514T G T . . AC=3;AN=1116 +NC_045512v2 12519 A12519G A G . . AC=4;AN=1116 +NC_045512v2 12525 C12525T C T . . AC=5;AN=1116 +NC_045512v2 12528 C12528A C A . . AC=1;AN=1116 +NC_045512v2 12529 A12529G A G . . AC=2;AN=1116 +NC_045512v2 12534 C12534T C T . . AC=1;AN=1116 +NC_045512v2 12547 A12547G A G . . AC=2;AN=1116 +NC_045512v2 12550 G12550A G A . . AC=2;AN=1116 +NC_045512v2 12556 A12556G A G . . AC=1;AN=1116 +NC_045512v2 12557 A12557C A C . . AC=2;AN=1116 +NC_045512v2 12559 C12559T C T . . AC=1;AN=1116 +NC_045512v2 12651 C12651T C T . . AC=3;AN=1116 +NC_045512v2 12655 T12655C T C . . AC=2;AN=1116 +NC_045512v2 12672 C12672T C T . . AC=1;AN=1116 +NC_045512v2 12694 G12694A G A . . AC=1;AN=1116 +NC_045512v2 12703 T12703C T C . . AC=1;AN=1116 +NC_045512v2 12710 C12710T C T . . AC=1;AN=1116 +NC_045512v2 12731 G12731A G A . . AC=1;AN=1116 +NC_045512v2 12733 C12733T C T . . AC=1;AN=1116 +NC_045512v2 12741 C12741T C T . . AC=2;AN=1116 +NC_045512v2 12747 C12747T C T . . AC=1;AN=1116 +NC_045512v2 12754 C12754T C T . . AC=2;AN=1116 +NC_045512v2 12759 A12759G A G . . AC=2;AN=1116 +NC_045512v2 12769 G12769A,G12769T G A,T . . AC=1,2;AN=1116 +NC_045512v2 12778 C12778T C T . . AC=2;AN=1116 +NC_045512v2 12781 C12781T C T . . AC=1;AN=1116 +NC_045512v2 12784 C12784T C T . . AC=1;AN=1116 +NC_045512v2 12786 C12786T C T . . AC=1;AN=1116 +NC_045512v2 12789 C12789T C T . . AC=3;AN=1116 +NC_045512v2 12809 C12809T C T . . AC=3;AN=1116 +NC_045512v2 12820 A12820G A G . . AC=3;AN=1116 +NC_045512v2 12832 G12832T G T . . AC=2;AN=1116 +NC_045512v2 12833 G12833A G A . . AC=1;AN=1116 +NC_045512v2 12845 G12845A G A . . AC=1;AN=1116 +NC_045512v2 12850 A12850G A G . . AC=2;AN=1116 +NC_045512v2 12854 C12854T C T . . AC=1;AN=1116 +NC_045512v2 12872 G12872A G A . . AC=1;AN=1116 +NC_045512v2 12878 A12878G A G . . AC=4;AN=1116 +NC_045512v2 12880 C12880T C T . . AC=3;AN=1116 +NC_045512v2 12892 G12892T G T . . AC=1;AN=1116 +NC_045512v2 12907 G12907A G A . . AC=1;AN=1116 +NC_045512v2 12911 G12911A G A . . AC=1;AN=1116 +NC_045512v2 12915 C12915T C T . . AC=3;AN=1116 +NC_045512v2 12923 C12923T C T . . AC=2;AN=1116 +NC_045512v2 12925 T12925C T C . . AC=1;AN=1116 +NC_045512v2 12964 A12964G A G . . AC=1;AN=1116 +NC_045512v2 12988 G12988T G T . . AC=14;AN=1116 +NC_045512v2 13006 T13006C T C . . AC=2;AN=1116 +NC_045512v2 13009 C13009T C T . . AC=1;AN=1116 +NC_045512v2 13019 C13019T C T . . AC=2;AN=1116 +NC_045512v2 13051 C13051T C T . . AC=2;AN=1116 +NC_045512v2 13059 C13059T C T . . AC=2;AN=1116 +NC_045512v2 13105 C13105T C T . . AC=1;AN=1116 +NC_045512v2 13115 C13115T C T . . AC=1;AN=1116 +NC_045512v2 13122 G13122A G A . . AC=1;AN=1116 +NC_045512v2 13168 C13168T C T . . AC=2;AN=1116 +NC_045512v2 13176 C13176T C T . . AC=2;AN=1116 +NC_045512v2 13201 G13201T G T . . AC=1;AN=1116 +NC_045512v2 13247 C13247T C T . . AC=2;AN=1116 +NC_045512v2 13252 C13252T C T . . AC=2;AN=1116 +NC_045512v2 13261 C13261T C T . . AC=1;AN=1116 +NC_045512v2 13264 C13264T C T . . AC=1;AN=1116 +NC_045512v2 13270 T13270C T C . . AC=1;AN=1116 +NC_045512v2 13274 C13274T C T . . AC=2;AN=1116 +NC_045512v2 13276 A13276G A G . . AC=1;AN=1116 +NC_045512v2 13315 A13315G A G . . AC=1;AN=1116 +NC_045512v2 13329 C13329T C T . . AC=2;AN=1116 +NC_045512v2 13335 C13335T C T . . AC=5;AN=1116 +NC_045512v2 13345 T13345C T C . . AC=2;AN=1116 +NC_045512v2 13348 G13348T G T . . AC=1;AN=1116 +NC_045512v2 13378 C13378T C T . . AC=2;AN=1116 +NC_045512v2 13384 C13384T C T . . AC=1;AN=1116 +NC_045512v2 13397 G13397A,G13397T G A,T . . AC=1,1;AN=1116 +NC_045512v2 13417 T13417C T C . . AC=1;AN=1116 +NC_045512v2 13433 A13433G A G . . AC=1;AN=1116 +NC_045512v2 13440 A13440G A G . . AC=1;AN=1116 +NC_045512v2 13452 C13452T C T . . AC=1;AN=1116 +NC_045512v2 13458 C13458T C T . . AC=2;AN=1116 +NC_045512v2 13459 G13459T G T . . AC=2;AN=1116 +NC_045512v2 13487 C13487T C T . . AC=1;AN=1116 +NC_045512v2 13502 C13502T C T . . AC=1;AN=1116 +NC_045512v2 13512 A13512T A T . . AC=2;AN=1116 +NC_045512v2 13513 G13513A,G13513T G A,T . . AC=1,2;AN=1116 +NC_045512v2 13514 G13514A G A . . AC=2;AN=1116 +NC_045512v2 13516 A13516G A G . . AC=1;AN=1116 +NC_045512v2 13517 C13517T C T . . AC=2;AN=1116 +NC_045512v2 13536 C13536T C T . . AC=20;AN=1116 +NC_045512v2 13554 C13554T C T . . AC=1;AN=1116 +NC_045512v2 13568 C13568T C T . . AC=2;AN=1116 +NC_045512v2 13604 G13604C G C . . AC=1;AN=1116 +NC_045512v2 13605 C13605T C T . . AC=1;AN=1116 +NC_045512v2 13617 G13617T G T . . AC=2;AN=1116 +NC_045512v2 13620 C13620T C T . . AC=2;AN=1116 +NC_045512v2 13665 C13665T C T . . AC=2;AN=1116 +NC_045512v2 13667 C13667T C T . . AC=1;AN=1116 +NC_045512v2 13671 C13671T C T . . AC=3;AN=1116 +NC_045512v2 13707 A13707G A G . . AC=1;AN=1116 +NC_045512v2 13708 C13708A C A . . AC=1;AN=1116 +NC_045512v2 13712 A13712G A G . . AC=2;AN=1116 +NC_045512v2 13713 G13713A G A . . AC=2;AN=1116 +NC_045512v2 13724 C13724T C T . . AC=1;AN=1116 +NC_045512v2 13730 C13730T C T . . AC=4;AN=1116 +NC_045512v2 13761 C13761T C T . . AC=1;AN=1116 +NC_045512v2 13794 T13794G T G . . AC=2;AN=1116 +NC_045512v2 13821 C13821T C T . . AC=1;AN=1116 +NC_045512v2 13827 T13827C T C . . AC=2;AN=1116 +NC_045512v2 13833 A13833G A G . . AC=1;AN=1116 +NC_045512v2 13852 A13852G A G . . AC=1;AN=1116 +NC_045512v2 13858 G13858T G T . . AC=2;AN=1116 +NC_045512v2 13860 C13860T C T . . AC=3;AN=1116 +NC_045512v2 13862 C13862T C T . . AC=2;AN=1116 +NC_045512v2 13863 A13863G A G . . AC=1;AN=1116 +NC_045512v2 13876 C13876T C T . . AC=1;AN=1116 +NC_045512v2 13880 T13880C T C . . AC=1;AN=1116 +NC_045512v2 13883 C13883T C T . . AC=1;AN=1116 +NC_045512v2 13887 C13887T C T . . AC=4;AN=1116 +NC_045512v2 13897 G13897T G T . . AC=1;AN=1116 +NC_045512v2 13914 T13914C T C . . AC=2;AN=1116 +NC_045512v2 13923 C13923T C T . . AC=1;AN=1116 +NC_045512v2 13945 C13945T C T . . AC=1;AN=1116 +NC_045512v2 13968 C13968T C T . . AC=1;AN=1116 +NC_045512v2 13993 G13993T G T . . AC=5;AN=1116 +NC_045512v2 13994 C13994T C T . . AC=3;AN=1116 +NC_045512v2 14001 A14001G A G . . AC=1;AN=1116 +NC_045512v2 14012 A14012T A T . . AC=1;AN=1116 +NC_045512v2 14020 G14020T G T . . AC=1;AN=1116 +NC_045512v2 14055 G14055T G T . . AC=1;AN=1116 +NC_045512v2 14076 C14076T C T . . AC=1;AN=1116 +NC_045512v2 14097 C14097T C T . . AC=1;AN=1116 +NC_045512v2 14109 A14109G A G . . AC=1;AN=1116 +NC_045512v2 14120 C14120T C T . . AC=6;AN=1116 +NC_045512v2 14122 G14122T G T . . AC=2;AN=1116 +NC_045512v2 14127 T14127C T C . . AC=1;AN=1116 +NC_045512v2 14144 A14144G A G . . AC=1;AN=1116 +NC_045512v2 14177 C14177T C T . . AC=1;AN=1116 +NC_045512v2 14178 C14178T C T . . AC=1;AN=1116 +NC_045512v2 14183 C14183T C T . . AC=1;AN=1116 +NC_045512v2 14184 C14184T C T . . AC=1;AN=1116 +NC_045512v2 14186 G14186A G A . . AC=1;AN=1116 +NC_045512v2 14187 G14187A G A . . AC=1;AN=1116 +NC_045512v2 14189 C14189T C T . . AC=1;AN=1116 +NC_045512v2 14202 G14202T G T . . AC=2;AN=1116 +NC_045512v2 14220 C14220T C T . . AC=3;AN=1116 +NC_045512v2 14230 C14230A,C14230T C A,T . . AC=2,1;AN=1116 +NC_045512v2 14235 C14235T C T . . AC=1;AN=1116 +NC_045512v2 14238 T14238C T C . . AC=2;AN=1116 +NC_045512v2 14241 G14241T G T . . AC=2;AN=1116 +NC_045512v2 14245 G14245A G A . . AC=1;AN=1116 +NC_045512v2 14250 G14250T G T . . AC=1;AN=1116 +NC_045512v2 14265 C14265T C T . . AC=1;AN=1116 +NC_045512v2 14268 G14268A G A . . AC=1;AN=1116 +NC_045512v2 14294 G14294A G A . . AC=1;AN=1116 +NC_045512v2 14313 T14313C T C . . AC=2;AN=1116 +NC_045512v2 14318 C14318T C T . . AC=1;AN=1116 +NC_045512v2 14322 C14322T C T . . AC=2;AN=1116 +NC_045512v2 14328 A14328G A G . . AC=1;AN=1116 +NC_045512v2 14330 A14330G A G . . AC=1;AN=1116 +NC_045512v2 14340 C14340T C T . . AC=4;AN=1116 +NC_045512v2 14345 T14345C T C . . AC=2;AN=1116 +NC_045512v2 14352 C14352T C T . . AC=1;AN=1116 +NC_045512v2 14371 G14371A,G14371T G A,T . . AC=2,2;AN=1116 +NC_045512v2 14396 C14396T C T . . AC=1;AN=1116 +NC_045512v2 14407 C14407T C T . . AC=4;AN=1116 +NC_045512v2 14408 C14408T C T . . AC=1114;AN=1116 +NC_045512v2 14424 A14424G A G . . AC=1;AN=1116 +NC_045512v2 14425 C14425A C A . . AC=2;AN=1116 +NC_045512v2 14428 G14428T G T . . AC=1;AN=1116 +NC_045512v2 14490 G14490A G A . . AC=1;AN=1116 +NC_045512v2 14491 C14491T C T . . AC=1;AN=1116 +NC_045512v2 14499 T14499C T C . . AC=1;AN=1116 +NC_045512v2 14508 T14508C T C . . AC=1;AN=1116 +NC_045512v2 14528 G14528A G A . . AC=1;AN=1116 +NC_045512v2 14531 C14531T C T . . AC=1;AN=1116 +NC_045512v2 14547 G14547A G A . . AC=1;AN=1116 +NC_045512v2 14580 G14580A,G14580T G A,T . . AC=1,2;AN=1116 +NC_045512v2 14599 C14599T C T . . AC=1;AN=1116 +NC_045512v2 14610 T14610C T C . . AC=1;AN=1116 +NC_045512v2 14643 T14643C T C . . AC=2;AN=1116 +NC_045512v2 14656 G14656T G T . . AC=1;AN=1116 +NC_045512v2 14676 C14676T C T . . AC=6;AN=1116 +NC_045512v2 14691 A14691G A G . . AC=1;AN=1116 +NC_045512v2 14697 C14697T C T . . AC=2;AN=1116 +NC_045512v2 14708 C14708T C T . . AC=2;AN=1116 +NC_045512v2 14721 T14721C T C . . AC=2;AN=1116 +NC_045512v2 14724 C14724T C T . . AC=9;AN=1116 +NC_045512v2 14741 C14741T C T . . AC=2;AN=1116 +NC_045512v2 14745 T14745G T G . . AC=1;AN=1116 +NC_045512v2 14757 C14757T C T . . AC=1;AN=1116 +NC_045512v2 14763 C14763T C T . . AC=1;AN=1116 +NC_045512v2 14769 T14769C T C . . AC=1;AN=1116 +NC_045512v2 14774 A14774G A G . . AC=2;AN=1116 +NC_045512v2 14785 G14785A G A . . AC=1;AN=1116 +NC_045512v2 14786 C14786T C T . . AC=5;AN=1116 +NC_045512v2 14805 C14805T C T . . AC=4;AN=1116 +NC_045512v2 14829 G14829T G T . . AC=1;AN=1116 +NC_045512v2 14857 G14857T G T . . AC=1;AN=1116 +NC_045512v2 14869 G14869A G A . . AC=1;AN=1116 +NC_045512v2 14874 G14874T G T . . AC=2;AN=1116 +NC_045512v2 14925 C14925T C T . . AC=1;AN=1116 +NC_045512v2 14928 C14928T C T . . AC=1;AN=1116 +NC_045512v2 14931 C14931T C T . . AC=4;AN=1116 +NC_045512v2 14937 C14937T C T . . AC=5;AN=1116 +NC_045512v2 15010 C15010T C T . . AC=1;AN=1116 +NC_045512v2 15026 C15026T C T . . AC=3;AN=1116 +NC_045512v2 15045 C15045T C T . . AC=1;AN=1116 +NC_045512v2 15081 C15081T C T . . AC=1;AN=1116 +NC_045512v2 15100 G15100T G T . . AC=1;AN=1116 +NC_045512v2 15120 C15120T C T . . AC=2;AN=1116 +NC_045512v2 15154 C15154T C T . . AC=1;AN=1116 +NC_045512v2 15156 T15156C T C . . AC=2;AN=1116 +NC_045512v2 15173 C15173T C T . . AC=1;AN=1116 +NC_045512v2 15187 A15187G A G . . AC=2;AN=1116 +NC_045512v2 15193 G15193A,G15193T G A,T . . AC=1,1;AN=1116 +NC_045512v2 15231 T15231C T C . . AC=1;AN=1116 +NC_045512v2 15237 C15237T C T . . AC=1;AN=1116 +NC_045512v2 15240 C15240T C T . . AC=5;AN=1116 +NC_045512v2 15250 A15250G A G . . AC=1;AN=1116 +NC_045512v2 15251 C15251A C A . . AC=1;AN=1116 +NC_045512v2 15253 G15253A G A . . AC=1;AN=1116 +NC_045512v2 15254 T15254C T C . . AC=1;AN=1116 +NC_045512v2 15260 G15260A,G15260T G A,T . . AC=1,1;AN=1116 +NC_045512v2 15264 T15264C T C . . AC=2;AN=1116 +NC_045512v2 15276 T15276A T A . . AC=1;AN=1116 +NC_045512v2 15277 C15277T C T . . AC=4;AN=1116 +NC_045512v2 15279 C15279T C T . . AC=4;AN=1116 +NC_045512v2 15283 A15283G A G . . AC=1;AN=1116 +NC_045512v2 15315 C15315T C T . . AC=1;AN=1116 +NC_045512v2 15324 C15324T C T . . AC=31;AN=1116 +NC_045512v2 15346 C15346A C A . . AC=1;AN=1116 +NC_045512v2 15352 C15352T C T . . AC=2;AN=1116 +NC_045512v2 15354 T15354C T C . . AC=2;AN=1116 +NC_045512v2 15366 T15366C T C . . AC=2;AN=1116 +NC_045512v2 15380 G15380T G T . . AC=1;AN=1116 +NC_045512v2 15402 A15402G A G . . AC=1;AN=1116 +NC_045512v2 15406 G15406T G T . . AC=1;AN=1116 +NC_045512v2 15437 T15437C T C . . AC=2;AN=1116 +NC_045512v2 15438 G15438T G T . . AC=8;AN=1116 +NC_045512v2 15451 G15451T G T . . AC=1;AN=1116 +NC_045512v2 15452 G15452T G T . . AC=2;AN=1116 +NC_045512v2 15477 A15477G,A15477T A G,T . . AC=1,2;AN=1116 +NC_045512v2 15480 C15480T C T . . AC=2;AN=1116 +NC_045512v2 15540 C15540T C T . . AC=1;AN=1116 +NC_045512v2 15543 G15543T G T . . AC=2;AN=1116 +NC_045512v2 15579 C15579T C T . . AC=2;AN=1116 +NC_045512v2 15585 T15585A T A . . AC=1;AN=1116 +NC_045512v2 15598 G15598A G A . . AC=14;AN=1116 +NC_045512v2 15613 C15613T C T . . AC=1;AN=1116 +NC_045512v2 15624 T15624C T C . . AC=2;AN=1116 +NC_045512v2 15652 G15652T G T . . AC=2;AN=1116 +NC_045512v2 15654 C15654T C T . . AC=1;AN=1116 +NC_045512v2 15656 C15656T C T . . AC=2;AN=1116 +NC_045512v2 15657 A15657G A G . . AC=1;AN=1116 +NC_045512v2 15705 G15705A G A . . AC=1;AN=1116 +NC_045512v2 15720 C15720T C T . . AC=5;AN=1116 +NC_045512v2 15732 G15732T G T . . AC=2;AN=1116 +NC_045512v2 15738 C15738T C T . . AC=1;AN=1116 +NC_045512v2 15753 A15753G A G . . AC=1;AN=1116 +NC_045512v2 15763 C15763T C T . . AC=2;AN=1116 +NC_045512v2 15766 G15766T G T . . AC=6;AN=1116 +NC_045512v2 15773 G15773A G A . . AC=1;AN=1116 +NC_045512v2 15774 C15774T C T . . AC=1;AN=1116 +NC_045512v2 15801 T15801C T C . . AC=2;AN=1116 +NC_045512v2 15820 A15820G A G . . AC=1;AN=1116 +NC_045512v2 15824 C15824T C T . . AC=2;AN=1116 +NC_045512v2 15848 C15848T C T . . AC=3;AN=1116 +NC_045512v2 15906 G15906T G T . . AC=5;AN=1116 +NC_045512v2 15908 G15908A G A . . AC=1;AN=1116 +NC_045512v2 15933 C15933T C T . . AC=2;AN=1116 +NC_045512v2 15951 C15951T C T . . AC=1;AN=1116 +NC_045512v2 15952 C15952T C T . . AC=1;AN=1116 +NC_045512v2 15960 C15960T C T . . AC=5;AN=1116 +NC_045512v2 15972 A15972G A G . . AC=2;AN=1116 +NC_045512v2 15978 T15978C T C . . AC=2;AN=1116 +NC_045512v2 15982 G15982T G T . . AC=1;AN=1116 +NC_045512v2 15984 A15984T A T . . AC=2;AN=1116 +NC_045512v2 16014 G16014A G A . . AC=1;AN=1116 +NC_045512v2 16017 C16017T C T . . AC=2;AN=1116 +NC_045512v2 16044 A16044T A T . . AC=3;AN=1116 +NC_045512v2 16045 C16045T C T . . AC=1;AN=1116 +NC_045512v2 16049 C16049T C T . . AC=1;AN=1116 +NC_045512v2 16059 T16059C T C . . AC=1;AN=1116 +NC_045512v2 16062 T16062C T C . . AC=3;AN=1116 +NC_045512v2 16068 G16068T G T . . AC=1;AN=1116 +NC_045512v2 16072 G16072T G T . . AC=1;AN=1116 +NC_045512v2 16075 G16075T G T . . AC=1;AN=1116 +NC_045512v2 16077 T16077C T C . . AC=1;AN=1116 +NC_045512v2 16084 C16084T C T . . AC=1;AN=1116 +NC_045512v2 16085 A16085G A G . . AC=1;AN=1116 +NC_045512v2 16089 G16089A G A . . AC=1;AN=1116 +NC_045512v2 16101 C16101T C T . . AC=2;AN=1116 +NC_045512v2 16110 G16110A G A . . AC=1;AN=1116 +NC_045512v2 16111 C16111T C T . . AC=2;AN=1116 +NC_045512v2 16114 C16114T C T . . AC=1;AN=1116 +NC_045512v2 16117 G16117T G T . . AC=1;AN=1116 +NC_045512v2 16138 T16138C T C . . AC=1;AN=1116 +NC_045512v2 16148 A16148G A G . . AC=1;AN=1116 +NC_045512v2 16163 C16163T C T . . AC=1;AN=1116 +NC_045512v2 16169 A16169G A G . . AC=1;AN=1116 +NC_045512v2 16173 C16173T C T . . AC=1;AN=1116 +NC_045512v2 16176 T16176C T C . . AC=4;AN=1116 +NC_045512v2 16178 C16178T C T . . AC=2;AN=1116 +NC_045512v2 16179 A16179G A G . . AC=2;AN=1116 +NC_045512v2 16197 G16197T G T . . AC=1;AN=1116 +NC_045512v2 16213 T16213C T C . . AC=1;AN=1116 +NC_045512v2 16217 C16217T C T . . AC=1;AN=1116 +NC_045512v2 16230 C16230T C T . . AC=1;AN=1116 +NC_045512v2 16242 T16242A T A . . AC=2;AN=1116 +NC_045512v2 16260 C16260T C T . . AC=3;AN=1116 +NC_045512v2 16289 C16289T C T . . AC=2;AN=1116 +NC_045512v2 16293 C16293T C T . . AC=4;AN=1116 +NC_045512v2 16329 C16329T C T . . AC=4;AN=1116 +NC_045512v2 16332 C16332T C T . . AC=2;AN=1116 +NC_045512v2 16362 C16362T C T . . AC=2;AN=1116 +NC_045512v2 16376 C16376T C T . . AC=2;AN=1116 +NC_045512v2 16377 G16377T G T . . AC=1;AN=1116 +NC_045512v2 16393 C16393T C T . . AC=3;AN=1116 +NC_045512v2 16394 C16394T C T . . AC=8;AN=1116 +NC_045512v2 16425 T16425G T G . . AC=1;AN=1116 +NC_045512v2 16428 C16428T C T . . AC=3;AN=1116 +NC_045512v2 16456 T16456C,T16456G T C,G . . AC=4,1;AN=1116 +NC_045512v2 16457 C16457T C T . . AC=2;AN=1116 +NC_045512v2 16469 C16469T C T . . AC=1;AN=1116 +NC_045512v2 16479 T16479C T C . . AC=2;AN=1116 +NC_045512v2 16521 T16521C T C . . AC=1;AN=1116 +NC_045512v2 16541 A16541G A G . . AC=1;AN=1116 +NC_045512v2 16568 C16568A C A . . AC=1;AN=1116 +NC_045512v2 16575 C16575T C T . . AC=1;AN=1116 +NC_045512v2 16616 C16616T C T . . AC=2;AN=1116 +NC_045512v2 16626 C16626T C T . . AC=1;AN=1116 +NC_045512v2 16632 T16632C T C . . AC=1;AN=1116 +NC_045512v2 16638 A16638G A G . . AC=1;AN=1116 +NC_045512v2 16647 G16647T G T . . AC=8;AN=1116 +NC_045512v2 16650 C16650T C T . . AC=2;AN=1116 +NC_045512v2 16653 A16653G A G . . AC=1;AN=1116 +NC_045512v2 16694 C16694A C A . . AC=2;AN=1116 +NC_045512v2 16695 T16695G T G . . AC=1;AN=1116 +NC_045512v2 16733 C16733T C T . . AC=1;AN=1116 +NC_045512v2 16741 G16741A,G16741T G A,T . . AC=2,2;AN=1116 +NC_045512v2 16743 T16743C T C . . AC=1;AN=1116 +NC_045512v2 16752 T16752G T G . . AC=1;AN=1116 +NC_045512v2 16762 C16762T C T . . AC=6;AN=1116 +NC_045512v2 16766 A16766G A G . . AC=1;AN=1116 +NC_045512v2 16813 G16813A G A . . AC=6;AN=1116 +NC_045512v2 16840 A16840C A C . . AC=1;AN=1116 +NC_045512v2 16846 G16846T G T . . AC=2;AN=1116 +NC_045512v2 16852 G16852T G T . . AC=3;AN=1116 +NC_045512v2 16853 G16853T G T . . AC=1;AN=1116 +NC_045512v2 16855 G16855T G T . . AC=1;AN=1116 +NC_045512v2 16861 G16861T G T . . AC=1;AN=1116 +NC_045512v2 16872 A16872C A C . . AC=1;AN=1116 +NC_045512v2 16889 A16889G A G . . AC=6;AN=1116 +NC_045512v2 16912 G16912T G T . . AC=4;AN=1116 +NC_045512v2 16915 C16915T C T . . AC=4;AN=1116 +NC_045512v2 16917 G16917T G T . . AC=1;AN=1116 +NC_045512v2 16920 A16920G A G . . AC=1;AN=1116 +NC_045512v2 16928 C16928T C T . . AC=1;AN=1116 +NC_045512v2 16935 G16935T G T . . AC=1;AN=1116 +NC_045512v2 16946 C16946T C T . . AC=1;AN=1116 +NC_045512v2 16968 G16968T G T . . AC=2;AN=1116 +NC_045512v2 16993 T16993C T C . . AC=2;AN=1116 +NC_045512v2 16997 C16997T C T . . AC=2;AN=1116 +NC_045512v2 17000 C17000T C T . . AC=1;AN=1116 +NC_045512v2 17004 C17004T C T . . AC=1;AN=1116 +NC_045512v2 17014 G17014T G T . . AC=4;AN=1116 +NC_045512v2 17019 G17019T G T . . AC=6;AN=1116 +NC_045512v2 17027 G17027T G T . . AC=1;AN=1116 +NC_045512v2 17032 G17032A G A . . AC=1;AN=1116 +NC_045512v2 17040 T17040C T C . . AC=1;AN=1116 +NC_045512v2 17058 G17058T G T . . AC=3;AN=1116 +NC_045512v2 17069 C17069T C T . . AC=2;AN=1116 +NC_045512v2 17104 C17104T C T . . AC=29;AN=1116 +NC_045512v2 17118 C17118T C T . . AC=2;AN=1116 +NC_045512v2 17119 C17119T C T . . AC=1;AN=1116 +NC_045512v2 17125 C17125T C T . . AC=5;AN=1116 +NC_045512v2 17126 T17126C T C . . AC=2;AN=1116 +NC_045512v2 17142 T17142A T A . . AC=2;AN=1116 +NC_045512v2 17145 C17145T C T . . AC=2;AN=1116 +NC_045512v2 17156 C17156T C T . . AC=1;AN=1116 +NC_045512v2 17163 C17163T C T . . AC=1;AN=1116 +NC_045512v2 17172 C17172T C T . . AC=1;AN=1116 +NC_045512v2 17208 T17208C T C . . AC=2;AN=1116 +NC_045512v2 17214 T17214C T C . . AC=1;AN=1116 +NC_045512v2 17249 C17249T C T . . AC=2;AN=1116 +NC_045512v2 17259 G17259T G T . . AC=7;AN=1116 +NC_045512v2 17261 G17261A G A . . AC=1;AN=1116 +NC_045512v2 17262 T17262C T C . . AC=1;AN=1116 +NC_045512v2 17278 G17278T G T . . AC=6;AN=1116 +NC_045512v2 17280 G17280T G T . . AC=2;AN=1116 +NC_045512v2 17302 G17302T G T . . AC=2;AN=1116 +NC_045512v2 17304 C17304T C T . . AC=2;AN=1116 +NC_045512v2 17313 T17313C T C . . AC=1;AN=1116 +NC_045512v2 17334 G17334T G T . . AC=3;AN=1116 +NC_045512v2 17336 C17336T C T . . AC=1;AN=1116 +NC_045512v2 17338 G17338T G T . . AC=1;AN=1116 +NC_045512v2 17410 C17410T C T . . AC=2;AN=1116 +NC_045512v2 17427 G17427T G T . . AC=2;AN=1116 +NC_045512v2 17429 A17429G A G . . AC=1;AN=1116 +NC_045512v2 17436 C17436T C T . . AC=1;AN=1116 +NC_045512v2 17502 C17502T C T . . AC=1;AN=1116 +NC_045512v2 17518 C17518A,C17518T C A,T . . AC=1,2;AN=1116 +NC_045512v2 17521 A17521G A G . . AC=2;AN=1116 +NC_045512v2 17550 C17550T C T . . AC=5;AN=1116 +NC_045512v2 17551 G17551A G A . . AC=4;AN=1116 +NC_045512v2 17568 T17568C T C . . AC=1;AN=1116 +NC_045512v2 17572 G17572T G T . . AC=1;AN=1116 +NC_045512v2 17590 G17590T G T . . AC=1;AN=1116 +NC_045512v2 17607 T17607C T C . . AC=1;AN=1116 +NC_045512v2 17612 A17612G A G . . AC=1;AN=1116 +NC_045512v2 17615 A17615G A G . . AC=2;AN=1116 +NC_045512v2 17632 G17632A G A . . AC=1;AN=1116 +NC_045512v2 17637 A17637G A G . . AC=4;AN=1116 +NC_045512v2 17639 C17639T C T . . AC=5;AN=1116 +NC_045512v2 17676 C17676T C T . . AC=3;AN=1116 +NC_045512v2 17678 C17678T C T . . AC=3;AN=1116 +NC_045512v2 17688 T17688C T C . . AC=2;AN=1116 +NC_045512v2 17690 C17690T C T . . AC=9;AN=1116 +NC_045512v2 17691 A17691G A G . . AC=1;AN=1116 +NC_045512v2 17721 G17721T G T . . AC=4;AN=1116 +NC_045512v2 17722 G17722T G T . . AC=2;AN=1116 +NC_045512v2 17730 A17730G A G . . AC=1;AN=1116 +NC_045512v2 17746 C17746T C T . . AC=4;AN=1116 +NC_045512v2 17750 C17750T C T . . AC=1;AN=1116 +NC_045512v2 17759 A17759G A G . . AC=1;AN=1116 +NC_045512v2 17762 C17762T C T . . AC=1;AN=1116 +NC_045512v2 17766 C17766T C T . . AC=1;AN=1116 +NC_045512v2 17772 T17772C T C . . AC=1;AN=1116 +NC_045512v2 17790 G17790T G T . . AC=1;AN=1116 +NC_045512v2 17795 C17795T C T . . AC=1;AN=1116 +NC_045512v2 17799 A17799G A G . . AC=1;AN=1116 +NC_045512v2 17802 C17802T C T . . AC=2;AN=1116 +NC_045512v2 17808 G17808T G T . . AC=2;AN=1116 +NC_045512v2 17835 T17835C T C . . AC=2;AN=1116 +NC_045512v2 17838 T17838C T C . . AC=2;AN=1116 +NC_045512v2 17893 G17893T G T . . AC=1;AN=1116 +NC_045512v2 17944 G17944T G T . . AC=5;AN=1116 +NC_045512v2 17964 G17964T G T . . AC=1;AN=1116 +NC_045512v2 17977 C17977T C T . . AC=1;AN=1116 +NC_045512v2 17999 C17999T C T . . AC=1;AN=1116 +NC_045512v2 18028 G18028T G T . . AC=15;AN=1116 +NC_045512v2 18029 C18029T C T . . AC=4;AN=1116 +NC_045512v2 18032 C18032T C T . . AC=5;AN=1116 +NC_045512v2 18060 C18060T C T . . AC=1;AN=1116 +NC_045512v2 18086 C18086T C T . . AC=2;AN=1116 +NC_045512v2 18105 G18105T G T . . AC=2;AN=1116 +NC_045512v2 18110 C18110T C T . . AC=1;AN=1116 +NC_045512v2 18115 C18115T C T . . AC=2;AN=1116 +NC_045512v2 18120 C18120T C T . . AC=2;AN=1116 +NC_045512v2 18129 C18129T C T . . AC=2;AN=1116 +NC_045512v2 18131 C18131T C T . . AC=1;AN=1116 +NC_045512v2 18144 T18144C T C . . AC=3;AN=1116 +NC_045512v2 18148 G18148A G A . . AC=1;AN=1116 +NC_045512v2 18167 C18167T C T . . AC=2;AN=1116 +NC_045512v2 18171 C18171T C T . . AC=2;AN=1116 +NC_045512v2 18174 A18174G A G . . AC=1;AN=1116 +NC_045512v2 18176 C18176T C T . . AC=2;AN=1116 +NC_045512v2 18183 C18183T C T . . AC=2;AN=1116 +NC_045512v2 18186 G18186T G T . . AC=2;AN=1116 +NC_045512v2 18210 G18210T G T . . AC=1;AN=1116 +NC_045512v2 18213 G18213T G T . . AC=2;AN=1116 +NC_045512v2 18231 T18231C T C . . AC=2;AN=1116 +NC_045512v2 18240 T18240C T C . . AC=1;AN=1116 +NC_045512v2 18252 C18252T C T . . AC=1;AN=1116 +NC_045512v2 18255 G18255T G T . . AC=1;AN=1116 +NC_045512v2 18267 C18267T C T . . AC=3;AN=1116 +NC_045512v2 18270 A18270C A C . . AC=2;AN=1116 +NC_045512v2 18281 G18281A G A . . AC=2;AN=1116 +NC_045512v2 18292 G18292T G T . . AC=5;AN=1116 +NC_045512v2 18309 T18309C T C . . AC=1;AN=1116 +NC_045512v2 18315 G18315A G A . . AC=1;AN=1116 +NC_045512v2 18318 G18318T G T . . AC=1;AN=1116 +NC_045512v2 18322 C18322T C T . . AC=1;AN=1116 +NC_045512v2 18329 C18329T C T . . AC=2;AN=1116 +NC_045512v2 18337 G18337T G T . . AC=1;AN=1116 +NC_045512v2 18366 A18366G A G . . AC=1;AN=1116 +NC_045512v2 18377 C18377T C T . . AC=1;AN=1116 +NC_045512v2 18380 G18380T G T . . AC=1;AN=1116 +NC_045512v2 18395 C18395T C T . . AC=3;AN=1116 +NC_045512v2 18402 T18402C T C . . AC=1;AN=1116 +NC_045512v2 18412 G18412T G T . . AC=1;AN=1116 +NC_045512v2 18424 A18424G A G . . AC=3;AN=1116 +NC_045512v2 18452 C18452T C T . . AC=2;AN=1116 +NC_045512v2 18453 T18453C T C . . AC=1;AN=1116 +NC_045512v2 18462 G18462T G T . . AC=1;AN=1116 +NC_045512v2 18463 C18463T C T . . AC=1;AN=1116 +NC_045512v2 18468 A18468C A C . . AC=1;AN=1116 +NC_045512v2 18481 C18481T C T . . AC=1;AN=1116 +NC_045512v2 18483 C18483T C T . . AC=1;AN=1116 +NC_045512v2 18486 C18486T C T . . AC=2;AN=1116 +NC_045512v2 18488 T18488C T C . . AC=2;AN=1116 +NC_045512v2 18500 A18500G A G . . AC=1;AN=1116 +NC_045512v2 18501 C18501T C T . . AC=1;AN=1116 +NC_045512v2 18508 C18508T C T . . AC=2;AN=1116 +NC_045512v2 18513 T18513A T A . . AC=1;AN=1116 +NC_045512v2 18529 A18529G A G . . AC=1;AN=1116 +NC_045512v2 18538 G18538T G T . . AC=1;AN=1116 +NC_045512v2 18546 G18546T G T . . AC=1;AN=1116 +NC_045512v2 18552 T18552C T C . . AC=1;AN=1116 +NC_045512v2 18555 C18555T C T . . AC=12;AN=1116 +NC_045512v2 18568 C18568T C T . . AC=5;AN=1116 +NC_045512v2 18570 C18570T C T . . AC=1;AN=1116 +NC_045512v2 18583 G18583A,G18583T G A,T . . AC=2,2;AN=1116 +NC_045512v2 18591 C18591T C T . . AC=1;AN=1116 +NC_045512v2 18594 A18594G A G . . AC=1;AN=1116 +NC_045512v2 18606 C18606T C T . . AC=1;AN=1116 +NC_045512v2 18616 A18616G A G . . AC=1;AN=1116 +NC_045512v2 18641 T18641C T C . . AC=1;AN=1116 +NC_045512v2 18647 C18647T C T . . AC=2;AN=1116 +NC_045512v2 18652 C18652T C T . . AC=1;AN=1116 +NC_045512v2 18654 C18654T C T . . AC=1;AN=1116 +NC_045512v2 18662 G18662C G C . . AC=2;AN=1116 +NC_045512v2 18670 G18670A G A . . AC=1;AN=1116 +NC_045512v2 18671 A18671C A C . . AC=1;AN=1116 +NC_045512v2 18674 G18674A G A . . AC=2;AN=1116 +NC_045512v2 18676 C18676T C T . . AC=1;AN=1116 +NC_045512v2 18687 C18687T C T . . AC=5;AN=1116 +NC_045512v2 18693 C18693A C A . . AC=1;AN=1116 +NC_045512v2 18695 C18695T C T . . AC=1;AN=1116 +NC_045512v2 18713 C18713T C T . . AC=3;AN=1116 +NC_045512v2 18723 T18723C T C . . AC=2;AN=1116 +NC_045512v2 18744 C18744T C T . . AC=6;AN=1116 +NC_045512v2 18747 C18747T C T . . AC=4;AN=1116 +NC_045512v2 18756 G18756T G T . . AC=2;AN=1116 +NC_045512v2 18788 C18788T C T . . AC=2;AN=1116 +NC_045512v2 18803 G18803T G T . . AC=5;AN=1116 +NC_045512v2 18807 C18807T C T . . AC=1;AN=1116 +NC_045512v2 18816 G18816T G T . . AC=1;AN=1116 +NC_045512v2 18818 A18818G A G . . AC=2;AN=1116 +NC_045512v2 18840 A18840G A G . . AC=2;AN=1116 +NC_045512v2 18846 A18846G A G . . AC=1;AN=1116 +NC_045512v2 18859 G18859T G T . . AC=2;AN=1116 +NC_045512v2 18877 C18877T C T . . AC=98;AN=1116 +NC_045512v2 18880 G18880T G T . . AC=1;AN=1116 +NC_045512v2 18898 G18898T G T . . AC=2;AN=1116 +NC_045512v2 18902 A18902C A C . . AC=1;AN=1116 +NC_045512v2 18904 C18904T C T . . AC=2;AN=1116 +NC_045512v2 18907 G18907T G T . . AC=3;AN=1116 +NC_045512v2 18928 C18928T C T . . AC=1;AN=1116 +NC_045512v2 18960 G18960T G T . . AC=1;AN=1116 +NC_045512v2 18972 G18972A G A . . AC=2;AN=1116 +NC_045512v2 18974 T18974G T G . . AC=1;AN=1116 +NC_045512v2 18978 A18978G A G . . AC=2;AN=1116 +NC_045512v2 18981 C18981T C T . . AC=4;AN=1116 +NC_045512v2 18984 G18984T G T . . AC=2;AN=1116 +NC_045512v2 18985 G18985T G T . . AC=1;AN=1116 +NC_045512v2 18989 T18989C T C . . AC=2;AN=1116 +NC_045512v2 18998 C18998T C T . . AC=18;AN=1116 +NC_045512v2 19009 G19009T G T . . AC=1;AN=1116 +NC_045512v2 19011 C19011T C T . . AC=1;AN=1116 +NC_045512v2 19029 C19029T C T . . AC=1;AN=1116 +NC_045512v2 19032 C19032T C T . . AC=1;AN=1116 +NC_045512v2 19041 C19041T C T . . AC=1;AN=1116 +NC_045512v2 19056 G19056T G T . . AC=1;AN=1116 +NC_045512v2 19066 C19066A C A . . AC=2;AN=1116 +NC_045512v2 19072 G19072T G T . . AC=1;AN=1116 +NC_045512v2 19080 A19080G A G . . AC=1;AN=1116 +NC_045512v2 19086 G19086T G T . . AC=5;AN=1116 +NC_045512v2 19089 C19089T C T . . AC=3;AN=1116 +NC_045512v2 19098 A19098G A G . . AC=1;AN=1116 +NC_045512v2 19113 C19113A,C19113T C A,T . . AC=1,1;AN=1116 +NC_045512v2 19116 A19116G A G . . AC=1;AN=1116 +NC_045512v2 19117 G19117T G T . . AC=1;AN=1116 +NC_045512v2 19137 A19137T A T . . AC=1;AN=1116 +NC_045512v2 19143 T19143C T C . . AC=2;AN=1116 +NC_045512v2 19145 C19145T C T . . AC=3;AN=1116 +NC_045512v2 19151 C19151T C T . . AC=1;AN=1116 +NC_045512v2 19160 C19160T C T . . AC=1;AN=1116 +NC_045512v2 19164 C19164T C T . . AC=5;AN=1116 +NC_045512v2 19167 A19167G A G . . AC=4;AN=1116 +NC_045512v2 19170 C19170T C T . . AC=7;AN=1116 +NC_045512v2 19174 G19174T G T . . AC=1;AN=1116 +NC_045512v2 19180 G19180T G T . . AC=1;AN=1116 +NC_045512v2 19185 C19185T C T . . AC=5;AN=1116 +NC_045512v2 19186 C19186T C T . . AC=2;AN=1116 +NC_045512v2 19232 T19232C T C . . AC=1;AN=1116 +NC_045512v2 19254 G19254T G T . . AC=1;AN=1116 +NC_045512v2 19264 C19264T C T . . AC=1;AN=1116 +NC_045512v2 19269 C19269T C T . . AC=3;AN=1116 +NC_045512v2 19273 C19273T C T . . AC=2;AN=1116 +NC_045512v2 19274 C19274A C A . . AC=4;AN=1116 +NC_045512v2 19324 C19324A C A . . AC=1;AN=1116 +NC_045512v2 19341 T19341C T C . . AC=1;AN=1116 +NC_045512v2 19366 C19366T C T . . AC=6;AN=1116 +NC_045512v2 19367 C19367T C T . . AC=1;AN=1116 +NC_045512v2 19374 C19374T C T . . AC=1;AN=1116 +NC_045512v2 19386 C19386T C T . . AC=1;AN=1116 +NC_045512v2 19387 A19387G A G . . AC=1;AN=1116 +NC_045512v2 19398 G19398A,G19398T G A,T . . AC=1,2;AN=1116 +NC_045512v2 19454 C19454T C T . . AC=1;AN=1116 +NC_045512v2 19473 T19473C T C . . AC=1;AN=1116 +NC_045512v2 19476 A19476G A G . . AC=1;AN=1116 +NC_045512v2 19480 G19480A,G19480T G A,T . . AC=2,1;AN=1116 +NC_045512v2 19488 C19488T C T . . AC=5;AN=1116 +NC_045512v2 19509 G19509A G A . . AC=4;AN=1116 +NC_045512v2 19524 C19524T C T . . AC=4;AN=1116 +NC_045512v2 19527 T19527C T C . . AC=1;AN=1116 +NC_045512v2 19538 T19538C T C . . AC=1;AN=1116 +NC_045512v2 19540 A19540G A G . . AC=1;AN=1116 +NC_045512v2 19542 G19542T G T . . AC=8;AN=1116 +NC_045512v2 19545 C19545T C T . . AC=1;AN=1116 +NC_045512v2 19549 G19549T G T . . AC=2;AN=1116 +NC_045512v2 19572 C19572T C T . . AC=1;AN=1116 +NC_045512v2 19602 C19602T C T . . AC=2;AN=1116 +NC_045512v2 19610 C19610T C T . . AC=2;AN=1116 +NC_045512v2 19635 G19635T G T . . AC=1;AN=1116 +NC_045512v2 19648 G19648T G T . . AC=1;AN=1116 +NC_045512v2 19650 A19650G A G . . AC=2;AN=1116 +NC_045512v2 19655 A19655G A G . . AC=1;AN=1116 +NC_045512v2 19656 G19656A G A . . AC=2;AN=1116 +NC_045512v2 19670 G19670A G A . . AC=1;AN=1116 +NC_045512v2 19674 A19674G A G . . AC=2;AN=1116 +NC_045512v2 19684 G19684A G A . . AC=1;AN=1116 +NC_045512v2 19698 C19698T C T . . AC=1;AN=1116 +NC_045512v2 19718 C19718T C T . . AC=5;AN=1116 +NC_045512v2 19735 G19735T G T . . AC=3;AN=1116 +NC_045512v2 19743 A19743C A C . . AC=1;AN=1116 +NC_045512v2 19763 C19763T C T . . AC=2;AN=1116 +NC_045512v2 19806 C19806T C T . . AC=1;AN=1116 +NC_045512v2 19815 A19815G A G . . AC=1;AN=1116 +NC_045512v2 19816 G19816A,G19816T G A,T . . AC=1,4;AN=1116 +NC_045512v2 19821 A19821G A G . . AC=1;AN=1116 +NC_045512v2 19839 T19839C T C . . AC=35;AN=1116 +NC_045512v2 19846 G19846A G A . . AC=1;AN=1116 +NC_045512v2 19855 A19855G A G . . AC=1;AN=1116 +NC_045512v2 19862 C19862T C T . . AC=6;AN=1116 +NC_045512v2 19872 G19872C G C . . AC=1;AN=1116 +NC_045512v2 19879 G19879A G A . . AC=1;AN=1116 +NC_045512v2 19884 C19884T C T . . AC=2;AN=1116 +NC_045512v2 19889 G19889T G T . . AC=1;AN=1116 +NC_045512v2 19891 G19891T G T . . AC=2;AN=1116 +NC_045512v2 19893 T19893C T C . . AC=2;AN=1116 +NC_045512v2 19899 A19899T A T . . AC=2;AN=1116 +NC_045512v2 19935 T19935C T C . . AC=1;AN=1116 +NC_045512v2 19955 C19955T C T . . AC=2;AN=1116 +NC_045512v2 19961 C19961T C T . . AC=1;AN=1116 +NC_045512v2 19962 G19962C,G19962T G C,T . . AC=1,4;AN=1116 +NC_045512v2 19963 A19963G A G . . AC=1;AN=1116 +NC_045512v2 19969 G19969A G A . . AC=4;AN=1116 +NC_045512v2 19975 C19975A C A . . AC=1;AN=1116 +NC_045512v2 19983 C19983T C T . . AC=3;AN=1116 +NC_045512v2 19999 G19999T G T . . AC=1;AN=1116 +NC_045512v2 20006 G20006T G T . . AC=1;AN=1116 +NC_045512v2 20037 T20037C T C . . AC=2;AN=1116 +NC_045512v2 20049 T20049C T C . . AC=2;AN=1116 +NC_045512v2 20055 A20055G A G . . AC=1;AN=1116 +NC_045512v2 20060 G20060T G T . . AC=1;AN=1116 +NC_045512v2 20062 G20062T G T . . AC=2;AN=1116 +NC_045512v2 20089 C20089T C T . . AC=1;AN=1116 +NC_045512v2 20092 A20092G A G . . AC=1;AN=1116 +NC_045512v2 20125 G20125A G A . . AC=1;AN=1116 +NC_045512v2 20134 G20134T G T . . AC=1;AN=1116 +NC_045512v2 20136 A20136G A G . . AC=1;AN=1116 +NC_045512v2 20148 C20148T C T . . AC=1;AN=1116 +NC_045512v2 20160 G20160T G T . . AC=1;AN=1116 +NC_045512v2 20164 G20164A G A . . AC=1;AN=1116 +NC_045512v2 20178 C20178T C T . . AC=1;AN=1116 +NC_045512v2 20196 T20196C T C . . AC=1;AN=1116 +NC_045512v2 20199 C20199T C T . . AC=2;AN=1116 +NC_045512v2 20233 C20233T C T . . AC=7;AN=1116 +NC_045512v2 20238 G20238T G T . . AC=1;AN=1116 +NC_045512v2 20247 G20247T G T . . AC=1;AN=1116 +NC_045512v2 20259 C20259T C T . . AC=1;AN=1116 +NC_045512v2 20262 A20262G A G . . AC=1;AN=1116 +NC_045512v2 20268 A20268G A G . . AC=106;AN=1116 +NC_045512v2 20275 G20275A,G20275T G A,T . . AC=2,1;AN=1116 +NC_045512v2 20283 C20283T C T . . AC=2;AN=1116 +NC_045512v2 20284 A20284G,A20284T A G,T . . AC=1,2;AN=1116 +NC_045512v2 20285 T20285C,T20285G T C,G . . AC=2,1;AN=1116 +NC_045512v2 20288 A20288G A G . . AC=2;AN=1116 +NC_045512v2 20320 C20320T C T . . AC=2;AN=1116 +NC_045512v2 20325 C20325T C T . . AC=1;AN=1116 +NC_045512v2 20355 A20355G A G . . AC=2;AN=1116 +NC_045512v2 20362 T20362C T C . . AC=1;AN=1116 +NC_045512v2 20368 C20368T C T . . AC=2;AN=1116 +NC_045512v2 20384 C20384T C T . . AC=1;AN=1116 +NC_045512v2 20396 A20396G A G . . AC=1;AN=1116 +NC_045512v2 20401 T20401C T C . . AC=1;AN=1116 +NC_045512v2 20405 C20405T C T . . AC=1;AN=1116 +NC_045512v2 20429 C20429T C T . . AC=1;AN=1116 +NC_045512v2 20451 C20451T C T . . AC=5;AN=1116 +NC_045512v2 20468 C20468T C T . . AC=1;AN=1116 +NC_045512v2 20474 C20474T C T . . AC=3;AN=1116 +NC_045512v2 20476 G20476T G T . . AC=1;AN=1116 +NC_045512v2 20491 G20491A G A . . AC=1;AN=1116 +NC_045512v2 20503 A20503G A G . . AC=1;AN=1116 +NC_045512v2 20544 C20544A C A . . AC=1;AN=1116 +NC_045512v2 20553 A20553G A G . . AC=2;AN=1116 +NC_045512v2 20555 C20555T C T . . AC=4;AN=1116 +NC_045512v2 20559 A20559G A G . . AC=2;AN=1116 +NC_045512v2 20568 G20568A G A . . AC=1;AN=1116 +NC_045512v2 20569 G20569T G T . . AC=1;AN=1116 +NC_045512v2 20578 G20578A,G20578T G A,T . . AC=1,3;AN=1116 +NC_045512v2 20580 G20580T G T . . AC=1;AN=1116 +NC_045512v2 20613 T20613C T C . . AC=1;AN=1116 +NC_045512v2 20622 A20622T A T . . AC=2;AN=1116 +NC_045512v2 20623 G20623T G T . . AC=2;AN=1116 +NC_045512v2 20624 A20624T A T . . AC=2;AN=1116 +NC_045512v2 20649 A20649T A T . . AC=1;AN=1116 +NC_045512v2 20667 A20667G A G . . AC=1;AN=1116 +NC_045512v2 20670 G20670A G A . . AC=1;AN=1116 +NC_045512v2 20675 A20675T A T . . AC=2;AN=1116 +NC_045512v2 20679 G20679A,G20679T G A,T . . AC=3,3;AN=1116 +NC_045512v2 20703 C20703T C T . . AC=1;AN=1116 +NC_045512v2 20709 G20709T G T . . AC=2;AN=1116 +NC_045512v2 20716 A20716G A G . . AC=1;AN=1116 +NC_045512v2 20724 A20724G A G . . AC=2;AN=1116 +NC_045512v2 20736 C20736T C T . . AC=1;AN=1116 +NC_045512v2 20740 C20740A C A . . AC=2;AN=1116 +NC_045512v2 20742 A20742C,A20742G,A20742T A C,G,T . . AC=4,1,1;AN=1116 +NC_045512v2 20752 G20752T G T . . AC=1;AN=1116 +NC_045512v2 20755 A20755C A C . . AC=2;AN=1116 +NC_045512v2 20759 C20759T C T . . AC=1;AN=1116 +NC_045512v2 20762 C20762T C T . . AC=4;AN=1116 +NC_045512v2 20764 T20764C T C . . AC=1;AN=1116 +NC_045512v2 20799 T20799C T C . . AC=5;AN=1116 +NC_045512v2 20823 C20823T C T . . AC=1;AN=1116 +NC_045512v2 20826 A20826G A G . . AC=1;AN=1116 +NC_045512v2 20829 A20829G A G . . AC=1;AN=1116 +NC_045512v2 20838 T20838C T C . . AC=1;AN=1116 +NC_045512v2 20844 C20844T C T . . AC=2;AN=1116 +NC_045512v2 20860 A20860G A G . . AC=1;AN=1116 +NC_045512v2 20890 G20890A G A . . AC=1;AN=1116 +NC_045512v2 20916 A20916G A G . . AC=2;AN=1116 +NC_045512v2 20931 G20931A G A . . AC=2;AN=1116 +NC_045512v2 20936 C20936T C T . . AC=1;AN=1116 +NC_045512v2 20940 G20940T G T . . AC=1;AN=1116 +NC_045512v2 20941 C20941T C T . . AC=1;AN=1116 +NC_045512v2 20946 C20946T C T . . AC=4;AN=1116 +NC_045512v2 20970 C20970T C T . . AC=1;AN=1116 +NC_045512v2 20976 T20976C T C . . AC=1;AN=1116 +NC_045512v2 20977 G20977T G T . . AC=1;AN=1116 +NC_045512v2 20980 G20980A G A . . AC=2;AN=1116 +NC_045512v2 20982 T20982C T C . . AC=1;AN=1116 +NC_045512v2 20989 T20989C T C . . AC=1;AN=1116 +NC_045512v2 21000 T21000C T C . . AC=1;AN=1116 +NC_045512v2 21005 C21005T C T . . AC=1;AN=1116 +NC_045512v2 21017 C21017T C T . . AC=1;AN=1116 +NC_045512v2 21018 A21018G A G . . AC=1;AN=1116 +NC_045512v2 21033 T21033C T C . . AC=1;AN=1116 +NC_045512v2 21034 C21034T C T . . AC=1;AN=1116 +NC_045512v2 21058 C21058T C T . . AC=3;AN=1116 +NC_045512v2 21077 C21077T C T . . AC=1;AN=1116 +NC_045512v2 21080 A21080C A C . . AC=1;AN=1116 +NC_045512v2 21099 G21099T G T . . AC=1;AN=1116 +NC_045512v2 21127 A21127G A G . . AC=1;AN=1116 +NC_045512v2 21131 A21131G A G . . AC=2;AN=1116 +NC_045512v2 21137 A21137G A G . . AC=5;AN=1116 +NC_045512v2 21145 C21145T C T . . AC=1;AN=1116 +NC_045512v2 21177 A21177G A G . . AC=1;AN=1116 +NC_045512v2 21193 G21193T G T . . AC=4;AN=1116 +NC_045512v2 21204 G21204T G T . . AC=4;AN=1116 +NC_045512v2 21205 C21205T C T . . AC=1;AN=1116 +NC_045512v2 21206 T21206G T G . . AC=1;AN=1116 +NC_045512v2 21219 C21219T C T . . AC=1;AN=1116 +NC_045512v2 21231 A21231G A G . . AC=1;AN=1116 +NC_045512v2 21234 C21234A,C21234T C A,T . . AC=1,1;AN=1116 +NC_045512v2 21255 G21255C,G21255T G C,T . . AC=55,2;AN=1116 +NC_045512v2 21291 T21291C T C . . AC=1;AN=1116 +NC_045512v2 21294 T21294A,T21294C T A,C . . AC=1,1;AN=1116 +NC_045512v2 21295 G21295A,G21295T G A,T . . AC=1,1;AN=1116 +NC_045512v2 21296 G21296A G A . . AC=1;AN=1116 +NC_045512v2 21302 C21302T C T . . AC=4;AN=1116 +NC_045512v2 21304 C21304A,C21304T C A,T . . AC=4,3;AN=1116 +NC_045512v2 21305 G21305A G A . . AC=3;AN=1116 +NC_045512v2 21306 C21306T C T . . AC=1;AN=1116 +NC_045512v2 21310 C21310A C A . . AC=1;AN=1116 +NC_045512v2 21312 A21312G A G . . AC=1;AN=1116 +NC_045512v2 21334 G21334T G T . . AC=2;AN=1116 +NC_045512v2 21352 A21352C A C . . AC=1;AN=1116 +NC_045512v2 21360 A21360C A C . . AC=1;AN=1116 +NC_045512v2 21364 C21364T C T . . AC=3;AN=1116 +NC_045512v2 21365 C21365T C T . . AC=2;AN=1116 +NC_045512v2 21368 T21368C T C . . AC=1;AN=1116 +NC_045512v2 21431 C21431T C T . . AC=1;AN=1116 +NC_045512v2 21464 A21464G A G . . AC=2;AN=1116 +NC_045512v2 21468 G21468A,G21468T G A,T . . AC=2,1;AN=1116 +NC_045512v2 21511 A21511G A G . . AC=1;AN=1116 +NC_045512v2 21515 A21515G A G . . AC=1;AN=1116 +NC_045512v2 21518 G21518T G T . . AC=2;AN=1116 +NC_045512v2 21538 G21538T G T . . AC=2;AN=1116 +NC_045512v2 21570 T21570G T G . . AC=2;AN=1116 +NC_045512v2 21588 C21588T C T . . AC=1;AN=1116 +NC_045512v2 21590 C21590T C T . . AC=1;AN=1116 +NC_045512v2 21595 C21595T C T . . AC=1;AN=1116 +NC_045512v2 21597 C21597T C T . . AC=3;AN=1116 +NC_045512v2 21600 G21600T G T . . AC=7;AN=1116 +NC_045512v2 21604 G21604T G T . . AC=2;AN=1116 +NC_045512v2 21606 G21606T G T . . AC=1;AN=1116 +NC_045512v2 21614 C21614T C T . . AC=21;AN=1116 +NC_045512v2 21618 C21618T C T . . AC=1;AN=1116 +NC_045512v2 21621 C21621A C A . . AC=2;AN=1116 +NC_045512v2 21624 G21624T G T . . AC=10;AN=1116 +NC_045512v2 21625 A21625G A G . . AC=1;AN=1116 +NC_045512v2 21627 C21627A C A . . AC=2;AN=1116 +NC_045512v2 21631 A21631T A T . . AC=1;AN=1116 +NC_045512v2 21635 C21635T C T . . AC=2;AN=1116 +NC_045512v2 21637 C21637T C T . . AC=3;AN=1116 +NC_045512v2 21638 C21638T C T . . AC=4;AN=1116 +NC_045512v2 21639 C21639T C T . . AC=1;AN=1116 +NC_045512v2 21641 G21641T G T . . AC=3;AN=1116 +NC_045512v2 21646 C21646T C T . . AC=3;AN=1116 +NC_045512v2 21648 C21648T C T . . AC=2;AN=1116 +NC_045512v2 21656 T21656C T C . . AC=1;AN=1116 +NC_045512v2 21660 C21660A C A . . AC=2;AN=1116 +NC_045512v2 21682 C21682T C T . . AC=2;AN=1116 +NC_045512v2 21717 A21717G A G . . AC=2;AN=1116 +NC_045512v2 21721 C21721T C T . . AC=2;AN=1116 +NC_045512v2 21724 G21724A,G21724T G A,T . . AC=4,15;AN=1116 +NC_045512v2 21731 C21731T C T . . AC=1;AN=1116 +NC_045512v2 21742 C21742T C T . . AC=1;AN=1116 +NC_045512v2 21745 T21745C T C . . AC=1;AN=1116 +NC_045512v2 21752 T21752C T C . . AC=1;AN=1116 +NC_045512v2 21753 G21753T G T . . AC=1;AN=1116 +NC_045512v2 21757 C21757T C T . . AC=4;AN=1116 +NC_045512v2 21760 T21760C T C . . AC=1;AN=1116 +NC_045512v2 21762 C21762T C T . . AC=2;AN=1116 +NC_045512v2 21770 G21770A G A . . AC=4;AN=1116 +NC_045512v2 21772 C21772T C T . . AC=6;AN=1116 +NC_045512v2 21775 T21775G T G . . AC=2;AN=1116 +NC_045512v2 21776 G21776T G T . . AC=1;AN=1116 +NC_045512v2 21777 G21777A G A . . AC=1;AN=1116 +NC_045512v2 21778 G21778A G A . . AC=2;AN=1116 +NC_045512v2 21780 C21780T C T . . AC=2;AN=1116 +NC_045512v2 21786 G21786T G T . . AC=3;AN=1116 +NC_045512v2 21789 C21789T C T . . AC=2;AN=1116 +NC_045512v2 21794 A21794G A G . . AC=1;AN=1116 +NC_045512v2 21800 G21800T G T . . AC=6;AN=1116 +NC_045512v2 21801 A21801C A C . . AC=3;AN=1116 +NC_045512v2 21802 T21802C T C . . AC=1;AN=1116 +NC_045512v2 21809 G21809A G A . . AC=1;AN=1116 +NC_045512v2 21811 C21811T C T . . AC=3;AN=1116 +NC_045512v2 21830 G21830C,G21830T G C,T . . AC=1,1;AN=1116 +NC_045512v2 21841 T21841A,T21841C T A,C . . AC=1,1;AN=1116 +NC_045512v2 21844 C21844T C T . . AC=1;AN=1116 +NC_045512v2 21846 C21846T C T . . AC=6;AN=1116 +NC_045512v2 21853 G21853T G T . . AC=1;AN=1116 +NC_045512v2 21855 C21855T C T . . AC=10;AN=1116 +NC_045512v2 21867 G21867T G T . . AC=1;AN=1116 +NC_045512v2 21890 T21890C T C . . AC=1;AN=1116 +NC_045512v2 21893 G21893A G A . . AC=1;AN=1116 +NC_045512v2 21910 C21910T C T . . AC=3;AN=1116 +NC_045512v2 21917 A21917G A G . . AC=1;AN=1116 +NC_045512v2 21944 A21944T A T . . AC=1;AN=1116 +NC_045512v2 21952 C21952T C T . . AC=2;AN=1116 +NC_045512v2 21973 T21973C T C . . AC=1;AN=1116 +NC_045512v2 21974 G21974C,G21974T G C,T . . AC=2,3;AN=1116 +NC_045512v2 21976 T21976C T C . . AC=2;AN=1116 +NC_045512v2 21997 C21997T C T . . AC=1;AN=1116 +NC_045512v2 21998 C21998T C T . . AC=2;AN=1116 +NC_045512v2 22000 C22000T C T . . AC=1;AN=1116 +NC_045512v2 22001 A22001G A G . . AC=1;AN=1116 +NC_045512v2 22017 G22017T G T . . AC=4;AN=1116 +NC_045512v2 22018 G22018T G T . . AC=6;AN=1116 +NC_045512v2 22020 T22020C T C . . AC=4;AN=1116 +NC_045512v2 22021 G22021A,G22021T G A,T . . AC=1,2;AN=1116 +NC_045512v2 22022 G22022A G A . . AC=1;AN=1116 +NC_045512v2 22024 A22024C A C . . AC=1;AN=1116 +NC_045512v2 22026 G22026T G T . . AC=1;AN=1116 +NC_045512v2 22051 G22051T G T . . AC=2;AN=1116 +NC_045512v2 22052 A22052C A C . . AC=1;AN=1116 +NC_045512v2 22053 A22053C A C . . AC=2;AN=1116 +NC_045512v2 22075 C22075T C T . . AC=2;AN=1116 +NC_045512v2 22088 C22088T C T . . AC=2;AN=1116 +NC_045512v2 22093 G22093A G A . . AC=3;AN=1116 +NC_045512v2 22096 C22096T C T . . AC=1;AN=1116 +NC_045512v2 22101 A22101T A T . . AC=1;AN=1116 +NC_045512v2 22104 G22104T G T . . AC=1;AN=1116 +NC_045512v2 22108 A22108G A G . . AC=1;AN=1116 +NC_045512v2 22112 G22112A G A . . AC=1;AN=1116 +NC_045512v2 22116 A22116G A G . . AC=2;AN=1116 +NC_045512v2 22120 C22120T C T . . AC=2;AN=1116 +NC_045512v2 22127 C22127T C T . . AC=6;AN=1116 +NC_045512v2 22132 G22132T G T . . AC=2;AN=1116 +NC_045512v2 22150 T22150C T C . . AC=1;AN=1116 +NC_045512v2 22154 G22154T G T . . AC=1;AN=1116 +NC_045512v2 22155 A22155G A G . . AC=2;AN=1116 +NC_045512v2 22162 T22162C T C . . AC=2;AN=1116 +NC_045512v2 22182 A22182G A G . . AC=2;AN=1116 +NC_045512v2 22189 T22189C T C . . AC=1;AN=1116 +NC_045512v2 22199 G22199T G T . . AC=2;AN=1116 +NC_045512v2 22201 G22201T G T . . AC=2;AN=1116 +NC_045512v2 22203 G22203T G T . . AC=2;AN=1116 +NC_045512v2 22205 G22205C,G22205T G C,T . . AC=2,2;AN=1116 +NC_045512v2 22206 A22206G A G . . AC=4;AN=1116 +NC_045512v2 22208 C22208T C T . . AC=3;AN=1116 +NC_045512v2 22210 C22210T C T . . AC=2;AN=1116 +NC_045512v2 22222 T22222C T C . . AC=1;AN=1116 +NC_045512v2 22224 C22224T C T . . AC=1;AN=1116 +NC_045512v2 22225 G22225A,G22225T G A,T . . AC=2,3;AN=1116 +NC_045512v2 22227 C22227T C T . . AC=56;AN=1116 +NC_045512v2 22244 G22244T G T . . AC=1;AN=1116 +NC_045512v2 22256 G22256T G T . . AC=2;AN=1116 +NC_045512v2 22264 C22264T C T . . AC=4;AN=1116 +NC_045512v2 22286 C22286T C T . . AC=1;AN=1116 +NC_045512v2 22295 C22295T C T . . AC=1;AN=1116 +NC_045512v2 22299 G22299A G A . . AC=1;AN=1116 +NC_045512v2 22301 A22301G A G . . AC=2;AN=1116 +NC_045512v2 22314 C22314T C T . . AC=2;AN=1116 +NC_045512v2 22320 A22320G A G . . AC=2;AN=1116 +NC_045512v2 22323 C22323T C T . . AC=3;AN=1116 +NC_045512v2 22325 T22325C T C . . AC=1;AN=1116 +NC_045512v2 22326 C22326T C T . . AC=2;AN=1116 +NC_045512v2 22330 A22330G A G . . AC=1;AN=1116 +NC_045512v2 22332 G22332A,G22332T G A,T . . AC=1,1;AN=1116 +NC_045512v2 22345 T22345C T C . . AC=1;AN=1116 +NC_045512v2 22346 G22346T G T . . AC=5;AN=1116 +NC_045512v2 22349 G22349T G T . . AC=2;AN=1116 +NC_045512v2 22363 G22363T G T . . AC=1;AN=1116 +NC_045512v2 22369 T22369C T C . . AC=1;AN=1116 +NC_045512v2 22381 G22381T G T . . AC=1;AN=1116 +NC_045512v2 22388 C22388T C T . . AC=2;AN=1116 +NC_045512v2 22409 G22409T G T . . AC=1;AN=1116 +NC_045512v2 22435 T22435C T C . . AC=1;AN=1116 +NC_045512v2 22438 A22438T A T . . AC=2;AN=1116 +NC_045512v2 22441 T22441G T G . . AC=1;AN=1116 +NC_045512v2 22444 C22444T C T . . AC=32;AN=1116 +NC_045512v2 22450 C22450T C T . . AC=2;AN=1116 +NC_045512v2 22457 A22457G A G . . AC=1;AN=1116 +NC_045512v2 22468 G22468T G T . . AC=1;AN=1116 +NC_045512v2 22471 G22471T G T . . AC=1;AN=1116 +NC_045512v2 22477 C22477T C T . . AC=5;AN=1116 +NC_045512v2 22480 C22480A,C22480T C A,T . . AC=2,1;AN=1116 +NC_045512v2 22482 C22482T C T . . AC=2;AN=1116 +NC_045512v2 22484 G22484T G T . . AC=1;AN=1116 +NC_045512v2 22487 G22487C G C . . AC=2;AN=1116 +NC_045512v2 22498 C22498T C T . . AC=1;AN=1116 +NC_045512v2 22522 C22522T C T . . AC=1;AN=1116 +NC_045512v2 22525 A22525G A G . . AC=2;AN=1116 +NC_045512v2 22528 A22528G A G . . AC=1;AN=1116 +NC_045512v2 22588 T22588C T C . . AC=1;AN=1116 +NC_045512v2 22606 A22606G A G . . AC=2;AN=1116 +NC_045512v2 22627 G22627A G A . . AC=2;AN=1116 +NC_045512v2 22645 T22645C T C . . AC=1;AN=1116 +NC_045512v2 22664 C22664T C T . . AC=1;AN=1116 +NC_045512v2 22672 T22672C T C . . AC=1;AN=1116 +NC_045512v2 22681 A22681C A C . . AC=1;AN=1116 +NC_045512v2 22687 C22687T C T . . AC=2;AN=1116 +NC_045512v2 22708 G22708T G T . . AC=1;AN=1116 +NC_045512v2 22712 C22712T C T . . AC=1;AN=1116 +NC_045512v2 22713 C22713T C T . . AC=4;AN=1116 +NC_045512v2 22756 T22756C T C . . AC=1;AN=1116 +NC_045512v2 22801 G22801T G T . . AC=2;AN=1116 +NC_045512v2 22812 A22812C A C . . AC=1;AN=1116 +NC_045512v2 22813 G22813T G T . . AC=4;AN=1116 +NC_045512v2 22825 T22825C T C . . AC=1;AN=1116 +NC_045512v2 22842 A22842T A T . . AC=1;AN=1116 +NC_045512v2 22843 T22843C T C . . AC=2;AN=1116 +NC_045512v2 22858 C22858T C T . . AC=1;AN=1116 +NC_045512v2 22879 C22879A C A . . AC=27;AN=1116 +NC_045512v2 22896 T22896C T C . . AC=1;AN=1116 +NC_045512v2 22912 T22912G T G . . AC=1;AN=1116 +NC_045512v2 22917 T22917G T G . . AC=6;AN=1116 +NC_045512v2 22918 G22918T G T . . AC=3;AN=1116 +NC_045512v2 22920 A22920T A T . . AC=1;AN=1116 +NC_045512v2 22938 C22938A C A . . AC=2;AN=1116 +NC_045512v2 22987 C22987T C T . . AC=3;AN=1116 +NC_045512v2 22992 G22992A,G22992T G A,T . . AC=10,3;AN=1116 +NC_045512v2 22993 C22993T C T . . AC=1;AN=1116 +NC_045512v2 22995 C22995A,C22995T C A,T . . AC=1,2;AN=1116 +NC_045512v2 22998 C22998T C T . . AC=1;AN=1116 +NC_045512v2 23006 G23006A G A . . AC=1;AN=1116 +NC_045512v2 23009 G23009T G T . . AC=1;AN=1116 +NC_045512v2 23012 G23012A G A . . AC=18;AN=1116 +NC_045512v2 23029 C23029T C T . . AC=2;AN=1116 +NC_045512v2 23042 T23042C T C . . AC=1;AN=1116 +NC_045512v2 23053 C23053T C T . . AC=2;AN=1116 +NC_045512v2 23062 T23062C T C . . AC=1;AN=1116 +NC_045512v2 23063 A23063T A T . . AC=12;AN=1116 +NC_045512v2 23064 A23064C A C . . AC=2;AN=1116 +NC_045512v2 23084 T23084C T C . . AC=1;AN=1116 +NC_045512v2 23114 C23114T C T . . AC=1;AN=1116 +NC_045512v2 23120 G23120T G T . . AC=4;AN=1116 +NC_045512v2 23121 C23121T C T . . AC=1;AN=1116 +NC_045512v2 23125 A23125T A T . . AC=1;AN=1116 +NC_045512v2 23126 G23126T G T . . AC=3;AN=1116 +NC_045512v2 23127 C23127T C T . . AC=2;AN=1116 +NC_045512v2 23170 C23170T C T . . AC=1;AN=1116 +NC_045512v2 23173 A23173G A G . . AC=1;AN=1116 +NC_045512v2 23176 T23176C T C . . AC=1;AN=1116 +NC_045512v2 23179 C23179T C T . . AC=1;AN=1116 +NC_045512v2 23185 C23185T C T . . AC=1;AN=1116 +NC_045512v2 23191 C23191T C T . . AC=6;AN=1116 +NC_045512v2 23202 C23202T C T . . AC=1;AN=1116 +NC_045512v2 23207 A23207G A G . . AC=2;AN=1116 +NC_045512v2 23208 C23208T C T . . AC=1;AN=1116 +NC_045512v2 23220 C23220A C A . . AC=1;AN=1116 +NC_045512v2 23227 T23227C T C . . AC=1;AN=1116 +NC_045512v2 23233 A23233G A G . . AC=1;AN=1116 +NC_045512v2 23234 A23234G A G . . AC=1;AN=1116 +NC_045512v2 23248 C23248T C T . . AC=4;AN=1116 +NC_045512v2 23255 T23255C T C . . AC=2;AN=1116 +NC_045512v2 23266 C23266T C T . . AC=1;AN=1116 +NC_045512v2 23271 C23271A C A . . AC=4;AN=1116 +NC_045512v2 23287 T23287C T C . . AC=2;AN=1116 +NC_045512v2 23296 T23296C T C . . AC=1;AN=1116 +NC_045512v2 23299 A23299G A G . . AC=1;AN=1116 +NC_045512v2 23302 G23302A G A . . AC=1;AN=1116 +NC_045512v2 23309 G23309C G C . . AC=2;AN=1116 +NC_045512v2 23311 G23311C,G23311T G C,T . . AC=6,1;AN=1116 +NC_045512v2 23324 A23324T A T . . AC=1;AN=1116 +NC_045512v2 23362 A23362T A T . . AC=1;AN=1116 +NC_045512v2 23401 G23401A,G23401T G A,T . . AC=3,1;AN=1116 +NC_045512v2 23403 A23403G A G . . AC=1114;AN=1116 +NC_045512v2 23406 T23406C T C . . AC=1;AN=1116 +NC_045512v2 23422 C23422T C T . . AC=2;AN=1116 +NC_045512v2 23426 G23426C G C . . AC=1;AN=1116 +NC_045512v2 23430 C23430T C T . . AC=1;AN=1116 +NC_045512v2 23438 G23438T G T . . AC=1;AN=1116 +NC_045512v2 23441 G23441A G A . . AC=1;AN=1116 +NC_045512v2 23453 C23453T C T . . AC=2;AN=1116 +NC_045512v2 23480 T23480G T G . . AC=2;AN=1116 +NC_045512v2 23501 G23501T G T . . AC=1;AN=1116 +NC_045512v2 23503 A23503G,A23503T A G,T . . AC=1,1;AN=1116 +NC_045512v2 23506 C23506T C T . . AC=1;AN=1116 +NC_045512v2 23522 G23522A,G23522C G A,C . . AC=2,2;AN=1116 +NC_045512v2 23525 C23525T C T . . AC=9;AN=1116 +NC_045512v2 23534 A23534T A T . . AC=1;AN=1116 +NC_045512v2 23536 C23536A,C23536T C A,T . . AC=1,2;AN=1116 +NC_045512v2 23548 T23548C T C . . AC=2;AN=1116 +NC_045512v2 23551 C23551T C T . . AC=3;AN=1116 +NC_045512v2 23557 C23557T C T . . AC=1;AN=1116 +NC_045512v2 23586 A23586G A G . . AC=3;AN=1116 +NC_045512v2 23587 G23587C,G23587T G C,T . . AC=2,2;AN=1116 +NC_045512v2 23588 A23588T A T . . AC=1;AN=1116 +NC_045512v2 23593 G23593C,G23593T G C,T . . AC=7,2;AN=1116 +NC_045512v2 23595 C23595T C T . . AC=1;AN=1116 +NC_045512v2 23599 T23599A T A . . AC=1;AN=1116 +NC_045512v2 23604 C23604A,C23604T C A,T . . AC=12,2;AN=1116 +NC_045512v2 23605 T23605C T C . . AC=1;AN=1116 +NC_045512v2 23608 G23608T G T . . AC=1;AN=1116 +NC_045512v2 23611 G23611A,G23611T G A,T . . AC=1,1;AN=1116 +NC_045512v2 23612 G23612A G A . . AC=1;AN=1116 +NC_045512v2 23625 C23625T C T . . AC=2;AN=1116 +NC_045512v2 23628 G23628T G T . . AC=2;AN=1116 +NC_045512v2 23629 T23629G T G . . AC=1;AN=1116 +NC_045512v2 23631 A23631G A G . . AC=1;AN=1116 +NC_045512v2 23633 T23633G T G . . AC=2;AN=1116 +NC_045512v2 23635 C23635T C T . . AC=1;AN=1116 +NC_045512v2 23644 C23644T C T . . AC=1;AN=1116 +NC_045512v2 23655 C23655T C T . . AC=2;AN=1116 +NC_045512v2 23664 C23664T C T . . AC=7;AN=1116 +NC_045512v2 23675 G23675C G C . . AC=1;AN=1116 +NC_045512v2 23678 G23678T G T . . AC=1;AN=1116 +NC_045512v2 23679 C23679T C T . . AC=1;AN=1116 +NC_045512v2 23683 C23683T C T . . AC=2;AN=1116 +NC_045512v2 23685 C23685T C T . . AC=1;AN=1116 +NC_045512v2 23686 T23686C T C . . AC=1;AN=1116 +NC_045512v2 23705 C23705T C T . . AC=1;AN=1116 +NC_045512v2 23709 C23709T C T . . AC=6;AN=1116 +NC_045512v2 23718 C23718T C T . . AC=1;AN=1116 +NC_045512v2 23730 C23730T C T . . AC=2;AN=1116 +NC_045512v2 23731 C23731T C T . . AC=20;AN=1116 +NC_045512v2 23746 A23746G A G . . AC=1;AN=1116 +NC_045512v2 23755 G23755T G T . . AC=1;AN=1116 +NC_045512v2 23756 A23756G,A23756T A G,T . . AC=2,4;AN=1116 +NC_045512v2 23782 G23782T G T . . AC=1;AN=1116 +NC_045512v2 23796 A23796G A G . . AC=1;AN=1116 +NC_045512v2 23802 C23802T C T . . AC=3;AN=1116 +NC_045512v2 23813 A23813G A G . . AC=1;AN=1116 +NC_045512v2 23824 G23824T G T . . AC=1;AN=1116 +NC_045512v2 23849 T23849C T C . . AC=2;AN=1116 +NC_045512v2 23854 C23854T C T . . AC=3;AN=1116 +NC_045512v2 23855 C23855T C T . . AC=1;AN=1116 +NC_045512v2 23856 G23856T G T . . AC=1;AN=1116 +NC_045512v2 23868 G23868T G T . . AC=7;AN=1116 +NC_045512v2 23869 A23869G A G . . AC=1;AN=1116 +NC_045512v2 23876 G23876A G A . . AC=6;AN=1116 +NC_045512v2 23893 C23893T C T . . AC=1;AN=1116 +NC_045512v2 23896 C23896T C T . . AC=2;AN=1116 +NC_045512v2 23905 T23905A T A . . AC=1;AN=1116 +NC_045512v2 23909 G23909A G A . . AC=1;AN=1116 +NC_045512v2 23910 C23910T C T . . AC=1;AN=1116 +NC_045512v2 23929 C23929T C T . . AC=1;AN=1116 +NC_045512v2 23934 C23934T C T . . AC=2;AN=1116 +NC_045512v2 23947 A23947G A G . . AC=1;AN=1116 +NC_045512v2 23948 G23948C,G23948T G C,T . . AC=1,2;AN=1116 +NC_045512v2 23949 A23949G A G . . AC=2;AN=1116 +NC_045512v2 23986 T23986C T C . . AC=3;AN=1116 +NC_045512v2 23989 A23989T A T . . AC=1;AN=1116 +NC_045512v2 23998 A23998G A G . . AC=2;AN=1116 +NC_045512v2 24007 G24007A G A . . AC=2;AN=1116 +NC_045512v2 24014 A24014G A G . . AC=1;AN=1116 +NC_045512v2 24023 C24023T C T . . AC=3;AN=1116 +NC_045512v2 24026 C24026T C T . . AC=1;AN=1116 +NC_045512v2 24031 C24031T C T . . AC=1;AN=1116 +NC_045512v2 24034 C24034T C T . . AC=2;AN=1116 +NC_045512v2 24062 A24062G A G . . AC=1;AN=1116 +NC_045512v2 24063 T24063C T C . . AC=1;AN=1116 +NC_045512v2 24070 A24070T A T . . AC=1;AN=1116 +NC_045512v2 24076 T24076A,T24076C T A,C . . AC=2,2;AN=1116 +NC_045512v2 24077 G24077A,G24077T G A,T . . AC=1,1;AN=1116 +NC_045512v2 24082 C24082T C T . . AC=2;AN=1116 +NC_045512v2 24088 T24088C T C . . AC=2;AN=1116 +NC_045512v2 24095 G24095T G T . . AC=1;AN=1116 +NC_045512v2 24098 G24098T G T . . AC=1;AN=1116 +NC_045512v2 24102 G24102A G A . . AC=2;AN=1116 +NC_045512v2 24106 C24106T C T . . AC=3;AN=1116 +NC_045512v2 24116 G24116A G A . . AC=1;AN=1116 +NC_045512v2 24129 A24129G A G . . AC=2;AN=1116 +NC_045512v2 24130 C24130T C T . . AC=4;AN=1116 +NC_045512v2 24138 C24138A C A . . AC=3;AN=1116 +NC_045512v2 24175 T24175C T C . . AC=2;AN=1116 +NC_045512v2 24197 G24197T G T . . AC=3;AN=1116 +NC_045512v2 24199 G24199T G T . . AC=1;AN=1116 +NC_045512v2 24202 T24202C T C . . AC=4;AN=1116 +NC_045512v2 24205 A24205T A T . . AC=2;AN=1116 +NC_045512v2 24224 T24224C T C . . AC=2;AN=1116 +NC_045512v2 24232 A24232G A G . . AC=2;AN=1116 +NC_045512v2 24258 C24258T C T . . AC=1;AN=1116 +NC_045512v2 24262 G24262T G T . . AC=2;AN=1116 +NC_045512v2 24326 T24326C T C . . AC=1;AN=1116 +NC_045512v2 24334 C24334T C T . . AC=3;AN=1116 +NC_045512v2 24348 G24348T G T . . AC=1;AN=1116 +NC_045512v2 24349 T24349C T C . . AC=4;AN=1116 +NC_045512v2 24368 G24368C,G24368T G C,T . . AC=1,6;AN=1116 +NC_045512v2 24369 A24369T A T . . AC=1;AN=1116 +NC_045512v2 24370 C24370T C T . . AC=1;AN=1116 +NC_045512v2 24378 C24378T C T . . AC=5;AN=1116 +NC_045512v2 24381 C24381T C T . . AC=3;AN=1116 +NC_045512v2 24382 C24382T C T . . AC=2;AN=1116 +NC_045512v2 24383 A24383G A G . . AC=1;AN=1116 +NC_045512v2 24442 C24442T C T . . AC=3;AN=1116 +NC_045512v2 24478 A24478T A T . . AC=1;AN=1116 +NC_045512v2 24506 T24506G T G . . AC=4;AN=1116 +NC_045512v2 24586 G24586T G T . . AC=1;AN=1116 +NC_045512v2 24621 C24621A,C24621T C A,T . . AC=1,4;AN=1116 +NC_045512v2 24642 C24642T C T . . AC=2;AN=1116 +NC_045512v2 24718 C24718A C A . . AC=1;AN=1116 +NC_045512v2 24734 C24734T C T . . AC=1;AN=1116 +NC_045512v2 24739 T24739C T C . . AC=2;AN=1116 +NC_045512v2 24743 G24743A G A . . AC=1;AN=1116 +NC_045512v2 24748 C24748T C T . . AC=2;AN=1116 +NC_045512v2 24755 G24755T G T . . AC=1;AN=1116 +NC_045512v2 24757 G24757T G T . . AC=1;AN=1116 +NC_045512v2 24764 G24764T G T . . AC=2;AN=1116 +NC_045512v2 24769 T24769C T C . . AC=2;AN=1116 +NC_045512v2 24775 A24775C A C . . AC=1;AN=1116 +NC_045512v2 24781 G24781T G T . . AC=4;AN=1116 +NC_045512v2 24794 G24794T G T . . AC=6;AN=1116 +NC_045512v2 24796 T24796C T C . . AC=2;AN=1116 +NC_045512v2 24805 T24805C T C . . AC=2;AN=1116 +NC_045512v2 24814 T24814C T C . . AC=2;AN=1116 +NC_045512v2 24844 C24844T C T . . AC=1;AN=1116 +NC_045512v2 24862 A24862G A G . . AC=2;AN=1116 +NC_045512v2 24865 C24865T C T . . AC=1;AN=1116 +NC_045512v2 24867 G24867T G T . . AC=1;AN=1116 +NC_045512v2 24872 G24872T G T . . AC=1;AN=1116 +NC_045512v2 24879 A24879G A G . . AC=1;AN=1116 +NC_045512v2 24883 G24883T G T . . AC=1;AN=1116 +NC_045512v2 24894 A24894C A C . . AC=1;AN=1116 +NC_045512v2 24904 C24904T C T . . AC=4;AN=1116 +NC_045512v2 24910 T24910C T C . . AC=14;AN=1116 +NC_045512v2 24912 C24912T C T . . AC=1;AN=1116 +NC_045512v2 24914 G24914C,G24914T G C,T . . AC=4,1;AN=1116 +NC_045512v2 24916 C24916T C T . . AC=1;AN=1116 +NC_045512v2 24923 T24923C T C . . AC=2;AN=1116 +NC_045512v2 24925 T24925C T C . . AC=3;AN=1116 +NC_045512v2 24926 G24926T G T . . AC=3;AN=1116 +NC_045512v2 24977 G24977C G C . . AC=1;AN=1116 +NC_045512v2 24991 T24991A T A . . AC=1;AN=1116 +NC_045512v2 25000 C25000T C T . . AC=2;AN=1116 +NC_045512v2 25008 A25008G A G . . AC=1;AN=1116 +NC_045512v2 25012 G25012A,G25012T G A,T . . AC=1,2;AN=1116 +NC_045512v2 25037 C25037T C T . . AC=2;AN=1116 +NC_045512v2 25039 T25039C T C . . AC=1;AN=1116 +NC_045512v2 25046 C25046T C T . . AC=3;AN=1116 +NC_045512v2 25047 C25047T C T . . AC=1;AN=1116 +NC_045512v2 25048 A25048G A G . . AC=2;AN=1116 +NC_045512v2 25049 G25049T G T . . AC=4;AN=1116 +NC_045512v2 25050 A25050T A T . . AC=1;AN=1116 +NC_045512v2 25062 G25062T G T . . AC=2;AN=1116 +NC_045512v2 25075 C25075T C T . . AC=2;AN=1116 +NC_045512v2 25078 T25078C T C . . AC=1;AN=1116 +NC_045512v2 25088 G25088T G T . . AC=9;AN=1116 +NC_045512v2 25117 C25117T C T . . AC=1;AN=1116 +NC_045512v2 25123 T25123C T C . . AC=1;AN=1116 +NC_045512v2 25135 G25135T G T . . AC=1;AN=1116 +NC_045512v2 25160 C25160T C T . . AC=1;AN=1116 +NC_045512v2 25162 C25162A C A . . AC=1;AN=1116 +NC_045512v2 25163 C25163A C A . . AC=1;AN=1116 +NC_045512v2 25166 G25166C G C . . AC=4;AN=1116 +NC_045512v2 25171 T25171C T C . . AC=1;AN=1116 +NC_045512v2 25177 G25177T G T . . AC=1;AN=1116 +NC_045512v2 25186 G25186A,G25186T G A,T . . AC=1,1;AN=1116 +NC_045512v2 25201 A25201G A G . . AC=1;AN=1116 +NC_045512v2 25207 C25207T C T . . AC=6;AN=1116 +NC_045512v2 25218 G25218T G T . . AC=2;AN=1116 +NC_045512v2 25244 G25244C,G25244T G C,T . . AC=1,1;AN=1116 +NC_045512v2 25249 G25249T G T . . AC=5;AN=1116 +NC_045512v2 25250 G25250T G T . . AC=1;AN=1116 +NC_045512v2 25252 G25252T G T . . AC=1;AN=1116 +NC_045512v2 25255 A25255G A G . . AC=1;AN=1116 +NC_045512v2 25266 G25266T G T . . AC=1;AN=1116 +NC_045512v2 25273 G25273T G T . . AC=1;AN=1116 +NC_045512v2 25276 C25276A C A . . AC=2;AN=1116 +NC_045512v2 25302 G25302T G T . . AC=1;AN=1116 +NC_045512v2 25303 T25303C T C . . AC=1;AN=1116 +NC_045512v2 25304 T25304C T C . . AC=1;AN=1116 +NC_045512v2 25306 T25306C T C . . AC=1;AN=1116 +NC_045512v2 25311 G25311T G T . . AC=4;AN=1116 +NC_045512v2 25312 T25312C T C . . AC=1;AN=1116 +NC_045512v2 25316 T25316C T C . . AC=2;AN=1116 +NC_045512v2 25318 C25318T C T . . AC=1;AN=1116 +NC_045512v2 25320 G25320T G T . . AC=1;AN=1116 +NC_045512v2 25327 A25327G A G . . AC=1;AN=1116 +NC_045512v2 25340 G25340T G T . . AC=1;AN=1116 +NC_045512v2 25349 C25349A C A . . AC=2;AN=1116 +NC_045512v2 25350 C25350T C T . . AC=3;AN=1116 +NC_045512v2 25351 A25351T A T . . AC=1;AN=1116 +NC_045512v2 25386 C25386T C T . . AC=2;AN=1116 +NC_045512v2 25410 A25410C A C . . AC=1;AN=1116 +NC_045512v2 25413 C25413T C T . . AC=3;AN=1116 +NC_045512v2 25429 G25429A,G25429T G A,T . . AC=1,26;AN=1116 +NC_045512v2 25433 C25433T C T . . AC=3;AN=1116 +NC_045512v2 25437 G25437T G T . . AC=5;AN=1116 +NC_045512v2 25440 G25440A,G25440T G A,T . . AC=2,2;AN=1116 +NC_045512v2 25442 A25442T A T . . AC=1;AN=1116 +NC_045512v2 25444 G25444A G A . . AC=1;AN=1116 +NC_045512v2 25445 G25445T G T . . AC=4;AN=1116 +NC_045512v2 25448 A25448G A G . . AC=1;AN=1116 +NC_045512v2 25456 G25456T G T . . AC=1;AN=1116 +NC_045512v2 25459 G25459T G T . . AC=1;AN=1116 +NC_045512v2 25460 C25460T C T . . AC=2;AN=1116 +NC_045512v2 25466 C25466A,C25466T C A,T . . AC=1,1;AN=1116 +NC_045512v2 25471 G25471C,G25471T G C,T . . AC=1,2;AN=1116 +NC_045512v2 25473 T25473C T C . . AC=2;AN=1116 +NC_045512v2 25479 T25479A T A . . AC=1;AN=1116 +NC_045512v2 25494 G25494T G T . . AC=8;AN=1116 +NC_045512v2 25504 C25504G C G . . AC=1;AN=1116 +NC_045512v2 25505 A25505C,A25505G A C,G . . AC=2,6;AN=1116 +NC_045512v2 25510 T25510A T A . . AC=1;AN=1116 +NC_045512v2 25511 C25511T C T . . AC=3;AN=1116 +NC_045512v2 25516 C25516T C T . . AC=1;AN=1116 +NC_045512v2 25517 C25517T C T . . AC=2;AN=1116 +NC_045512v2 25519 T25519G T G . . AC=2;AN=1116 +NC_045512v2 25521 C25521T C T . . AC=2;AN=1116 +NC_045512v2 25523 G25523T G T . . AC=4;AN=1116 +NC_045512v2 25524 A25524G A G . . AC=2;AN=1116 +NC_045512v2 25528 C25528T C T . . AC=4;AN=1116 +NC_045512v2 25538 G25538T G T . . AC=1;AN=1116 +NC_045512v2 25544 C25544T C T . . AC=2;AN=1116 +NC_045512v2 25546 C25546T C T . . AC=4;AN=1116 +NC_045512v2 25552 G25552T G T . . AC=8;AN=1116 +NC_045512v2 25553 C25553T C T . . AC=4;AN=1116 +NC_045512v2 25555 G25555T G T . . AC=1;AN=1116 +NC_045512v2 25563 G25563C,G25563T G C,T . . AC=2,374;AN=1116 +NC_045512v2 25570 T25570C T C . . AC=1;AN=1116 +NC_045512v2 25572 C25572T C T . . AC=2;AN=1116 +NC_045512v2 25575 A25575C,A25575G A C,G . . AC=2,1;AN=1116 +NC_045512v2 25577 T25577C,T25577G T C,G . . AC=3,1;AN=1116 +NC_045512v2 25584 C25584A,C25584T C A,T . . AC=1,3;AN=1116 +NC_045512v2 25595 G25595A,G25595T G A,T . . AC=1,1;AN=1116 +NC_045512v2 25599 G25599T G T . . AC=3;AN=1116 +NC_045512v2 25603 C25603T C T . . AC=1;AN=1116 +NC_045512v2 25606 G25606T G T . . AC=3;AN=1116 +NC_045512v2 25611 C25611T C T . . AC=1;AN=1116 +NC_045512v2 25613 C25613G C G . . AC=1;AN=1116 +NC_045512v2 25614 C25614T C T . . AC=3;AN=1116 +NC_045512v2 25617 G25617T G T . . AC=10;AN=1116 +NC_045512v2 25624 C25624T C T . . AC=2;AN=1116 +NC_045512v2 25626 C25626G,C25626T C G,T . . AC=1,2;AN=1116 +NC_045512v2 25642 C25642T C T . . AC=2;AN=1116 +NC_045512v2 25644 G25644T G T . . AC=1;AN=1116 +NC_045512v2 25665 C25665T C T . . AC=3;AN=1116 +NC_045512v2 25667 C25667T C T . . AC=4;AN=1116 +NC_045512v2 25672 C25672T C T . . AC=1;AN=1116 +NC_045512v2 25681 G25681A G A . . AC=1;AN=1116 +NC_045512v2 25687 G25687A,G25687T G A,T . . AC=2,3;AN=1116 +NC_045512v2 25688 C25688T C T . . AC=4;AN=1116 +NC_045512v2 25690 G25690A G A . . AC=1;AN=1116 +NC_045512v2 25699 G25699T G T . . AC=2;AN=1116 +NC_045512v2 25705 T25705C T C . . AC=2;AN=1116 +NC_045512v2 25710 C25710T C T . . AC=8;AN=1116 +NC_045512v2 25713 T25713C T C . . AC=2;AN=1116 +NC_045512v2 25714 C25714T C T . . AC=2;AN=1116 +NC_045512v2 25720 G25720T G T . . AC=2;AN=1116 +NC_045512v2 25721 C25721T C T . . AC=2;AN=1116 +NC_045512v2 25728 C25728T C T . . AC=6;AN=1116 +NC_045512v2 25731 C25731T C T . . AC=7;AN=1116 +NC_045512v2 25732 T25732G T G . . AC=1;AN=1116 +NC_045512v2 25740 G25740T G T . . AC=1;AN=1116 +NC_045512v2 25747 A25747C A C . . AC=1;AN=1116 +NC_045512v2 25767 G25767T G T . . AC=2;AN=1116 +NC_045512v2 25775 G25775T G T . . AC=3;AN=1116 +NC_045512v2 25776 G25776T G T . . AC=1;AN=1116 +NC_045512v2 25777 C25777T C T . . AC=2;AN=1116 +NC_045512v2 25783 T25783C T C . . AC=2;AN=1116 +NC_045512v2 25784 G25784T G T . . AC=2;AN=1116 +NC_045512v2 25785 G25785T G T . . AC=7;AN=1116 +NC_045512v2 25791 C25791T C T . . AC=4;AN=1116 +NC_045512v2 25793 G25793A,G25793T G A,T . . AC=1,2;AN=1116 +NC_045512v2 25797 C25797T C T . . AC=2;AN=1116 +NC_045512v2 25800 A25800T A T . . AC=1;AN=1116 +NC_045512v2 25801 A25801T A T . . AC=1;AN=1116 +NC_045512v2 25806 A25806G A G . . AC=1;AN=1116 +NC_045512v2 25814 A25814G A G . . AC=1;AN=1116 +NC_045512v2 25831 C25831T C T . . AC=3;AN=1116 +NC_045512v2 25844 C25844T C T . . AC=5;AN=1116 +NC_045512v2 25855 G25855T G T . . AC=2;AN=1116 +NC_045512v2 25856 A25856C A C . . AC=2;AN=1116 +NC_045512v2 25872 C25872T C T . . AC=1;AN=1116 +NC_045512v2 25886 C25886T C T . . AC=1;AN=1116 +NC_045512v2 25889 C25889T C T . . AC=1;AN=1116 +NC_045512v2 25894 G25894A G A . . AC=1;AN=1116 +NC_045512v2 25896 C25896T C T . . AC=1;AN=1116 +NC_045512v2 25904 C25904T C T . . AC=13;AN=1116 +NC_045512v2 25906 G25906C,G25906T G C,T . . AC=6,3;AN=1116 +NC_045512v2 25907 G25907T G T . . AC=3;AN=1116 +NC_045512v2 25910 A25910C,A25910G A C,G . . AC=1,2;AN=1116 +NC_045512v2 25911 T25911G T G . . AC=1;AN=1116 +NC_045512v2 25912 G25912T G T . . AC=2;AN=1116 +NC_045512v2 25916 C25916T C T . . AC=8;AN=1116 +NC_045512v2 25919 C25919T C T . . AC=2;AN=1116 +NC_045512v2 25922 G25922T G T . . AC=1;AN=1116 +NC_045512v2 25936 C25936T C T . . AC=2;AN=1116 +NC_045512v2 25946 A25946C A C . . AC=1;AN=1116 +NC_045512v2 25947 G25947C,G25947T G C,T . . AC=5,7;AN=1116 +NC_045512v2 25948 A25948T A T . . AC=1;AN=1116 +NC_045512v2 25949 T25949C T C . . AC=1;AN=1116 +NC_045512v2 25963 G25963A G A . . AC=1;AN=1116 +NC_045512v2 25970 G25970T G T . . AC=1;AN=1116 +NC_045512v2 25971 G25971A G A . . AC=1;AN=1116 +NC_045512v2 25972 G25972A G A . . AC=2;AN=1116 +NC_045512v2 25976 C25976A C A . . AC=2;AN=1116 +NC_045512v2 25996 G25996A,G25996T G A,T . . AC=2,6;AN=1116 +NC_045512v2 26010 C26010T C T . . AC=1;AN=1116 +NC_045512v2 26013 C26013T C T . . AC=1;AN=1116 +NC_045512v2 26020 G26020T G T . . AC=2;AN=1116 +NC_045512v2 26022 C26022T C T . . AC=1;AN=1116 +NC_045512v2 26029 C26029A C A . . AC=1;AN=1116 +NC_045512v2 26038 T26038C T C . . AC=3;AN=1116 +NC_045512v2 26056 G26056T G T . . AC=2;AN=1116 +NC_045512v2 26058 C26058T C T . . AC=1;AN=1116 +NC_045512v2 26060 C26060T C T . . AC=8;AN=1116 +NC_045512v2 26062 G26062A,G26062T G A,T . . AC=1,4;AN=1116 +NC_045512v2 26063 G26063T G T . . AC=2;AN=1116 +NC_045512v2 26070 A26070G A G . . AC=1;AN=1116 +NC_045512v2 26094 T26094C T C . . AC=2;AN=1116 +NC_045512v2 26097 A26097G A G . . AC=1;AN=1116 +NC_045512v2 26105 A26105G A G . . AC=1;AN=1116 +NC_045512v2 26110 C26110T C T . . AC=4;AN=1116 +NC_045512v2 26111 C26111T C T . . AC=1;AN=1116 +NC_045512v2 26113 G26113C G C . . AC=1;AN=1116 +NC_045512v2 26126 A26126T A T . . AC=1;AN=1116 +NC_045512v2 26139 C26139T C T . . AC=2;AN=1116 +NC_045512v2 26144 G26144A,G26144T G A,T . . AC=2,1;AN=1116 +NC_045512v2 26149 T26149C T C . . AC=3;AN=1116 +NC_045512v2 26151 C26151T C T . . AC=2;AN=1116 +NC_045512v2 26152 G26152T G T . . AC=2;AN=1116 +NC_045512v2 26153 G26153T G T . . AC=1;AN=1116 +NC_045512v2 26156 T26156C T C . . AC=1;AN=1116 +NC_045512v2 26160 T26160C T C . . AC=1;AN=1116 +NC_045512v2 26163 T26163C T C . . AC=1;AN=1116 +NC_045512v2 26165 C26165T C T . . AC=1;AN=1116 +NC_045512v2 26171 T26171A T A . . AC=2;AN=1116 +NC_045512v2 26172 G26172T G T . . AC=1;AN=1116 +NC_045512v2 26173 G26173T G T . . AC=1;AN=1116 +NC_045512v2 26174 A26174C A C . . AC=1;AN=1116 +NC_045512v2 26177 C26177T C T . . AC=2;AN=1116 +NC_045512v2 26195 C26195T C T . . AC=1;AN=1116 +NC_045512v2 26208 C26208T C T . . AC=2;AN=1116 +NC_045512v2 26217 G26217T G T . . AC=3;AN=1116 +NC_045512v2 26221 G26221A G A . . AC=2;AN=1116 +NC_045512v2 26230 G26230T G T . . AC=1;AN=1116 +NC_045512v2 26233 G26233T G T . . AC=2;AN=1116 +NC_045512v2 26256 C26256T C T . . AC=4;AN=1116 +NC_045512v2 26257 G26257A G A . . AC=1;AN=1116 +NC_045512v2 26260 T26260G T G . . AC=1;AN=1116 +NC_045512v2 26261 C26261T C T . . AC=1;AN=1116 +NC_045512v2 26262 G26262A G A . . AC=1;AN=1116 +NC_045512v2 26268 G26268T G T . . AC=1;AN=1116 +NC_045512v2 26270 C26270T C T . . AC=5;AN=1116 +NC_045512v2 26273 G26273T G T . . AC=1;AN=1116 +NC_045512v2 26305 C26305T C T . . AC=3;AN=1116 +NC_045512v2 26313 C26313T C T . . AC=2;AN=1116 +NC_045512v2 26319 A26319G A G . . AC=2;AN=1116 +NC_045512v2 26332 A26332G A G . . AC=4;AN=1116 +NC_045512v2 26333 C26333T C T . . AC=1;AN=1116 +NC_045512v2 26340 C26340T C T . . AC=1;AN=1116 +NC_045512v2 26370 C26370T C T . . AC=1;AN=1116 +NC_045512v2 26389 G26389T G T . . AC=1;AN=1116 +NC_045512v2 26395 C26395T C T . . AC=1;AN=1116 +NC_045512v2 26404 C26404T C T . . AC=1;AN=1116 +NC_045512v2 26408 C26408T C T . . AC=2;AN=1116 +NC_045512v2 26409 T26409C T C . . AC=1;AN=1116 +NC_045512v2 26415 C26415T C T . . AC=1;AN=1116 +NC_045512v2 26416 G26416T G T . . AC=3;AN=1116 +NC_045512v2 26424 T26424C T C . . AC=1;AN=1116 +NC_045512v2 26426 G26426A G A . . AC=1;AN=1116 +NC_045512v2 26447 C26447A,C26447T C A,T . . AC=1,2;AN=1116 +NC_045512v2 26450 G26450T G T . . AC=3;AN=1116 +NC_045512v2 26456 C26456T C T . . AC=4;AN=1116 +NC_045512v2 26458 G26458C G C . . AC=1;AN=1116 +NC_045512v2 26459 A26459G A G . . AC=1;AN=1116 +NC_045512v2 26461 C26461T C T . . AC=3;AN=1116 +NC_045512v2 26464 C26464T C T . . AC=2;AN=1116 +NC_045512v2 26469 C26469T C T . . AC=1;AN=1116 +NC_045512v2 26497 T26497C T C . . AC=2;AN=1116 +NC_045512v2 26510 T26510C T C . . AC=1;AN=1116 +NC_045512v2 26512 T26512C T C . . AC=2;AN=1116 +NC_045512v2 26513 A26513G A G . . AC=1;AN=1116 +NC_045512v2 26526 G26526T G T . . AC=1;AN=1116 +NC_045512v2 26527 C26527T C T . . AC=4;AN=1116 +NC_045512v2 26529 G26529T G T . . AC=1;AN=1116 +NC_045512v2 26530 A26530G A G . . AC=8;AN=1116 +NC_045512v2 26534 C26534T C T . . AC=2;AN=1116 +NC_045512v2 26543 T26543A T A . . AC=1;AN=1116 +NC_045512v2 26550 G26550A G A . . AC=1;AN=1116 +NC_045512v2 26571 C26571T C T . . AC=1;AN=1116 +NC_045512v2 26589 G26589C G C . . AC=1;AN=1116 +NC_045512v2 26594 A26594T A T . . AC=1;AN=1116 +NC_045512v2 26600 C26600T C T . . AC=2;AN=1116 +NC_045512v2 26604 T26604C T C . . AC=4;AN=1116 +NC_045512v2 26607 C26607T C T . . AC=1;AN=1116 +NC_045512v2 26615 G26615T G T . . AC=2;AN=1116 +NC_045512v2 26625 C26625T C T . . AC=5;AN=1116 +NC_045512v2 26640 G26640T G T . . AC=1;AN=1116 +NC_045512v2 26645 C26645T C T . . AC=6;AN=1116 +NC_045512v2 26648 G26648A G A . . AC=1;AN=1116 +NC_045512v2 26654 G26654T G T . . AC=1;AN=1116 +NC_045512v2 26664 A26664G A G . . AC=1;AN=1116 +NC_045512v2 26677 T26677C T C . . AC=3;AN=1116 +NC_045512v2 26681 C26681T C T . . AC=12;AN=1116 +NC_045512v2 26690 G26690T G T . . AC=1;AN=1116 +NC_045512v2 26730 G26730T G T . . AC=3;AN=1116 +NC_045512v2 26735 C26735T C T . . AC=59;AN=1116 +NC_045512v2 26754 G26754A G A . . AC=1;AN=1116 +NC_045512v2 26767 T26767C T C . . AC=4;AN=1116 +NC_045512v2 26768 C26768T C T . . AC=1;AN=1116 +NC_045512v2 26787 G26787A G A . . AC=1;AN=1116 +NC_045512v2 26801 C26801G,C26801T C G,T . . AC=51,8;AN=1116 +NC_045512v2 26822 C26822T C T . . AC=1;AN=1116 +NC_045512v2 26828 G26828A,G26828T G A,T . . AC=1,2;AN=1116 +NC_045512v2 26843 T26843C T C . . AC=1;AN=1116 +NC_045512v2 26849 G26849T G T . . AC=2;AN=1116 +NC_045512v2 26858 C26858T C T . . AC=1;AN=1116 +NC_045512v2 26864 A26864G,A26864T A G,T . . AC=1,1;AN=1116 +NC_045512v2 26876 T26876C T C . . AC=8;AN=1116 +NC_045512v2 26885 C26885T C T . . AC=4;AN=1116 +NC_045512v2 26894 C26894T C T . . AC=4;AN=1116 +NC_045512v2 26895 C26895T C T . . AC=1;AN=1116 +NC_045512v2 26903 T26903C T C . . AC=1;AN=1116 +NC_045512v2 26906 T26906C T C . . AC=2;AN=1116 +NC_045512v2 26912 C26912T C T . . AC=1;AN=1116 +NC_045512v2 26918 G26918T G T . . AC=6;AN=1116 +NC_045512v2 26927 A26927G A G . . AC=1;AN=1116 +NC_045512v2 26936 C26936T C T . . AC=1;AN=1116 +NC_045512v2 26937 G26937A G A . . AC=1;AN=1116 +NC_045512v2 26951 G26951A,G26951T G A,T . . AC=2,1;AN=1116 +NC_045512v2 26972 T26972C T C . . AC=15;AN=1116 +NC_045512v2 26984 C26984T C T . . AC=1;AN=1116 +NC_045512v2 26985 C26985T C T . . AC=2;AN=1116 +NC_045512v2 26986 A26986T A T . . AC=1;AN=1116 +NC_045512v2 27002 C27002T C T . . AC=2;AN=1116 +NC_045512v2 27005 C27005T C T . . AC=3;AN=1116 +NC_045512v2 27008 G27008T G T . . AC=1;AN=1116 +NC_045512v2 27014 G27014T G T . . AC=1;AN=1116 +NC_045512v2 27046 C27046T C T . . AC=2;AN=1116 +NC_045512v2 27047 G27047T G T . . AC=1;AN=1116 +NC_045512v2 27059 C27059T C T . . AC=3;AN=1116 +NC_045512v2 27084 G27084A,G27084T G A,T . . AC=2,1;AN=1116 +NC_045512v2 27086 A27086T A T . . AC=1;AN=1116 +NC_045512v2 27092 C27092T C T . . AC=2;AN=1116 +NC_045512v2 27107 A27107T A T . . AC=2;AN=1116 +NC_045512v2 27110 C27110T C T . . AC=1;AN=1116 +NC_045512v2 27119 C27119T C T . . AC=1;AN=1116 +NC_045512v2 27128 C27128T C T . . AC=3;AN=1116 +NC_045512v2 27137 A27137G A G . . AC=2;AN=1116 +NC_045512v2 27143 C27143T C T . . AC=1;AN=1116 +NC_045512v2 27147 G27147T G T . . AC=1;AN=1116 +NC_045512v2 27160 G27160T G T . . AC=1;AN=1116 +NC_045512v2 27165 G27165T G T . . AC=1;AN=1116 +NC_045512v2 27167 C27167T C T . . AC=1;AN=1116 +NC_045512v2 27207 T27207C T C . . AC=1;AN=1116 +NC_045512v2 27212 T27212C T C . . AC=2;AN=1116 +NC_045512v2 27213 C27213T C T . . AC=7;AN=1116 +NC_045512v2 27216 T27216A T A . . AC=1;AN=1116 +NC_045512v2 27232 A27232G A G . . AC=1;AN=1116 +NC_045512v2 27237 A27237G A G . . AC=1;AN=1116 +NC_045512v2 27256 A27256G A G . . AC=1;AN=1116 +NC_045512v2 27263 C27263T C T . . AC=1;AN=1116 +NC_045512v2 27264 T27264G T G . . AC=2;AN=1116 +NC_045512v2 27277 A27277G A G . . AC=1;AN=1116 +NC_045512v2 27280 T27280C T C . . AC=1;AN=1116 +NC_045512v2 27281 G27281T G T . . AC=3;AN=1116 +NC_045512v2 27294 C27294T C T . . AC=2;AN=1116 +NC_045512v2 27297 C27297T C T . . AC=1;AN=1116 +NC_045512v2 27299 T27299C T C . . AC=10;AN=1116 +NC_045512v2 27303 C27303A C A . . AC=1;AN=1116 +NC_045512v2 27319 T27319C T C . . AC=2;AN=1116 +NC_045512v2 27327 G27327T G T . . AC=1;AN=1116 +NC_045512v2 27328 T27328C T C . . AC=1;AN=1116 +NC_045512v2 27346 T27346C T C . . AC=1;AN=1116 +NC_045512v2 27358 G27358T G T . . AC=1;AN=1116 +NC_045512v2 27371 C27371T C T . . AC=1;AN=1116 +NC_045512v2 27382 G27382C,G27382T G C,T . . AC=1,1;AN=1116 +NC_045512v2 27383 A27383T A T . . AC=1;AN=1116 +NC_045512v2 27384 T27384C T C . . AC=4;AN=1116 +NC_045512v2 27390 G27390C G C . . AC=1;AN=1116 +NC_045512v2 27393 C27393T C T . . AC=1;AN=1116 +NC_045512v2 27403 A27403T A T . . AC=2;AN=1116 +NC_045512v2 27415 G27415A G A . . AC=1;AN=1116 +NC_045512v2 27416 C27416T C T . . AC=1;AN=1116 +NC_045512v2 27418 C27418T C T . . AC=1;AN=1116 +NC_045512v2 27420 G27420A G A . . AC=1;AN=1116 +NC_045512v2 27429 C27429T C T . . AC=1;AN=1116 +NC_045512v2 27431 C27431T C T . . AC=2;AN=1116 +NC_045512v2 27434 C27434T C T . . AC=4;AN=1116 +NC_045512v2 27447 T27447C T C . . AC=2;AN=1116 +NC_045512v2 27459 G27459T G T . . AC=1;AN=1116 +NC_045512v2 27476 C27476T C T . . AC=1;AN=1116 +NC_045512v2 27478 G27478T G T . . AC=1;AN=1116 +NC_045512v2 27484 T27484C T C . . AC=4;AN=1116 +NC_045512v2 27489 A27489G A G . . AC=1;AN=1116 +NC_045512v2 27498 C27498T C T . . AC=1;AN=1116 +NC_045512v2 27499 T27499C T C . . AC=1;AN=1116 +NC_045512v2 27506 G27506T G T . . AC=2;AN=1116 +NC_045512v2 27509 C27509T C T . . AC=1;AN=1116 +NC_045512v2 27513 C27513T C T . . AC=1;AN=1116 +NC_045512v2 27516 G27516A G A . . AC=1;AN=1116 +NC_045512v2 27519 C27519A C A . . AC=1;AN=1116 +NC_045512v2 27527 C27527T C T . . AC=2;AN=1116 +NC_045512v2 27532 C27532T C T . . AC=4;AN=1116 +NC_045512v2 27539 T27539C T C . . AC=1;AN=1116 +NC_045512v2 27561 G27561T G T . . AC=2;AN=1116 +NC_045512v2 27576 T27576C,T27576G T C,G . . AC=3,2;AN=1116 +NC_045512v2 27577 C27577T C T . . AC=2;AN=1116 +NC_045512v2 27583 G27583T G T . . AC=2;AN=1116 +NC_045512v2 27589 G27589A G A . . AC=2;AN=1116 +NC_045512v2 27596 C27596T C T . . AC=1;AN=1116 +NC_045512v2 27598 G27598T G T . . AC=1;AN=1116 +NC_045512v2 27600 C27600T C T . . AC=1;AN=1116 +NC_045512v2 27603 C27603T C T . . AC=3;AN=1116 +NC_045512v2 27604 G27604A G A . . AC=1;AN=1116 +NC_045512v2 27610 C27610T C T . . AC=1;AN=1116 +NC_045512v2 27612 C27612T C T . . AC=1;AN=1116 +NC_045512v2 27622 T27622C T C . . AC=1;AN=1116 +NC_045512v2 27630 C27630T C T . . AC=1;AN=1116 +NC_045512v2 27632 G27632T G T . . AC=2;AN=1116 +NC_045512v2 27634 T27634C T C . . AC=3;AN=1116 +NC_045512v2 27637 G27637A G A . . AC=1;AN=1116 +NC_045512v2 27641 C27641T C T . . AC=2;AN=1116 +NC_045512v2 27644 C27644A C A . . AC=1;AN=1116 +NC_045512v2 27645 T27645A T A . . AC=2;AN=1116 +NC_045512v2 27651 G27651C G C . . AC=1;AN=1116 +NC_045512v2 27657 C27657T C T . . AC=1;AN=1116 +NC_045512v2 27666 G27666A,G27666T G A,T . . AC=2,1;AN=1116 +NC_045512v2 27669 A27669G A G . . AC=2;AN=1116 +NC_045512v2 27670 G27670T G T . . AC=1;AN=1116 +NC_045512v2 27672 T27672C T C . . AC=1;AN=1116 +NC_045512v2 27673 C27673T C T . . AC=3;AN=1116 +NC_045512v2 27674 A27674T A T . . AC=2;AN=1116 +NC_045512v2 27675 A27675C A C . . AC=1;AN=1116 +NC_045512v2 27679 C27679T C T . . AC=2;AN=1116 +NC_045512v2 27684 C27684T C T . . AC=2;AN=1116 +NC_045512v2 27685 T27685C T C . . AC=1;AN=1116 +NC_045512v2 27688 C27688T C T . . AC=1;AN=1116 +NC_045512v2 27691 A27691T A T . . AC=1;AN=1116 +NC_045512v2 27703 G27703T G T . . AC=5;AN=1116 +NC_045512v2 27708 G27708T G T . . AC=1;AN=1116 +NC_045512v2 27717 G27717A G A . . AC=1;AN=1116 +NC_045512v2 27741 C27741T C T . . AC=4;AN=1116 +NC_045512v2 27746 G27746T G T . . AC=1;AN=1116 +NC_045512v2 27752 C27752T C T . . AC=3;AN=1116 +NC_045512v2 27754 G27754T G T . . AC=1;AN=1116 +NC_045512v2 27755 A27755T A T . . AC=2;AN=1116 +NC_045512v2 27762 G27762C G C . . AC=1;AN=1116 +NC_045512v2 27769 C27769G,C27769T C G,T . . AC=1,2;AN=1116 +NC_045512v2 27778 A27778G A G . . AC=1;AN=1116 +NC_045512v2 27798 G27798T G T . . AC=1;AN=1116 +NC_045512v2 27800 C27800A C A . . AC=20;AN=1116 +NC_045512v2 27804 C27804T C T . . AC=3;AN=1116 +NC_045512v2 27806 G27806T G T . . AC=1;AN=1116 +NC_045512v2 27807 C27807G C G . . AC=1;AN=1116 +NC_045512v2 27808 T27808C T C . . AC=2;AN=1116 +NC_045512v2 27811 T27811C T C . . AC=2;AN=1116 +NC_045512v2 27821 A27821G A G . . AC=2;AN=1116 +NC_045512v2 27824 T27824C T C . . AC=1;AN=1116 +NC_045512v2 27827 G27827A,G27827T G A,T . . AC=1,1;AN=1116 +NC_045512v2 27834 A27834T A T . . AC=1;AN=1116 +NC_045512v2 27835 T27835C T C . . AC=1;AN=1116 +NC_045512v2 27842 G27842T G T . . AC=2;AN=1116 +NC_045512v2 27845 C27845T C T . . AC=1;AN=1116 +NC_045512v2 27846 T27846C T C . . AC=1;AN=1116 +NC_045512v2 27847 C27847T C T . . AC=3;AN=1116 +NC_045512v2 27849 C27849T C T . . AC=2;AN=1116 +NC_045512v2 27851 T27851C T C . . AC=2;AN=1116 +NC_045512v2 27852 G27852T G T . . AC=2;AN=1116 +NC_045512v2 27856 T27856C,T27856G T C,G . . AC=1,1;AN=1116 +NC_045512v2 27857 G27857T G T . . AC=1;AN=1116 +NC_045512v2 27865 A27865T A T . . AC=1;AN=1116 +NC_045512v2 27866 T27866A T A . . AC=1;AN=1116 +NC_045512v2 27869 T27869C T C . . AC=4;AN=1116 +NC_045512v2 27874 C27874T C T . . AC=1;AN=1116 +NC_045512v2 27877 G27877T G T . . AC=4;AN=1116 +NC_045512v2 27881 C27881T C T . . AC=4;AN=1116 +NC_045512v2 27882 G27882T G T . . AC=1;AN=1116 +NC_045512v2 27890 G27890T G T . . AC=3;AN=1116 +NC_045512v2 27900 T27900C T C . . AC=1;AN=1116 +NC_045512v2 27903 C27903T C T . . AC=1;AN=1116 +NC_045512v2 27906 G27906T G T . . AC=1;AN=1116 +NC_045512v2 27911 C27911T C T . . AC=2;AN=1116 +NC_045512v2 27915 G27915A G A . . AC=4;AN=1116 +NC_045512v2 27916 G27916T G T . . AC=1;AN=1116 +NC_045512v2 27919 T27919C T C . . AC=1;AN=1116 +NC_045512v2 27920 C27920T C T . . AC=5;AN=1116 +NC_045512v2 27923 C27923T C T . . AC=2;AN=1116 +NC_045512v2 27925 C27925A C A . . AC=1;AN=1116 +NC_045512v2 27932 A27932G A G . . AC=2;AN=1116 +NC_045512v2 27933 G27933A,G27933T G A,T . . AC=1,1;AN=1116 +NC_045512v2 27944 C27944T C T . . AC=26;AN=1116 +NC_045512v2 27945 C27945T C T . . AC=6;AN=1116 +NC_045512v2 27955 G27955A,G27955T G A,T . . AC=2,1;AN=1116 +NC_045512v2 27962 G27962T G T . . AC=1;AN=1116 +NC_045512v2 27964 C27964T C T . . AC=22;AN=1116 +NC_045512v2 27970 C27970A C A . . AC=2;AN=1116 +NC_045512v2 27972 C27972T C T . . AC=6;AN=1116 +NC_045512v2 27973 A27973G A G . . AC=1;AN=1116 +NC_045512v2 27979 A27979G,A27979T A G,T . . AC=1,1;AN=1116 +NC_045512v2 27987 G27987T G T . . AC=3;AN=1116 +NC_045512v2 27988 T27988C T C . . AC=1;AN=1116 +NC_045512v2 27989 A27989G A G . . AC=1;AN=1116 +NC_045512v2 27990 G27990A G A . . AC=1;AN=1116 +NC_045512v2 27996 G27996T G T . . AC=3;AN=1116 +NC_045512v2 27998 C27998T C T . . AC=2;AN=1116 +NC_045512v2 28001 G28001C,G28001T G C,T . . AC=1,2;AN=1116 +NC_045512v2 28003 G28003C,G28003T G C,T . . AC=4,1;AN=1116 +NC_045512v2 28005 C28005T C T . . AC=2;AN=1116 +NC_045512v2 28006 C28006T C T . . AC=1;AN=1116 +NC_045512v2 28009 T28009C T C . . AC=1;AN=1116 +NC_045512v2 28010 T28010A T A . . AC=1;AN=1116 +NC_045512v2 28026 T28026C T C . . AC=1;AN=1116 +NC_045512v2 28027 G28027T G T . . AC=3;AN=1116 +NC_045512v2 28044 G28044T G T . . AC=1;AN=1116 +NC_045512v2 28045 C28045T C T . . AC=6;AN=1116 +NC_045512v2 28048 G28048A,G28048T G A,T . . AC=1,5;AN=1116 +NC_045512v2 28056 G28056A G A . . AC=1;AN=1116 +NC_045512v2 28057 C28057T C T . . AC=1;AN=1116 +NC_045512v2 28065 A28065C A C . . AC=2;AN=1116 +NC_045512v2 28073 G28073T G T . . AC=1;AN=1116 +NC_045512v2 28077 G28077T G T . . AC=2;AN=1116 +NC_045512v2 28079 G28079A,G28079T G A,T . . AC=1,3;AN=1116 +NC_045512v2 28081 A28081T A T . . AC=1;AN=1116 +NC_045512v2 28083 G28083T G T . . AC=6;AN=1116 +NC_045512v2 28085 G28085T G T . . AC=1;AN=1116 +NC_045512v2 28086 G28086T G T . . AC=5;AN=1116 +NC_045512v2 28087 C28087T C T . . AC=8;AN=1116 +NC_045512v2 28093 C28093T C T . . AC=4;AN=1116 +NC_045512v2 28098 T28098C T C . . AC=1;AN=1116 +NC_045512v2 28099 C28099T C T . . AC=4;AN=1116 +NC_045512v2 28109 G28109T G T . . AC=1;AN=1116 +NC_045512v2 28110 T28110C T C . . AC=2;AN=1116 +NC_045512v2 28111 A28111G A G . . AC=4;AN=1116 +NC_045512v2 28115 C28115T C T . . AC=1;AN=1116 +NC_045512v2 28117 A28117T A T . . AC=2;AN=1116 +NC_045512v2 28118 T28118C T C . . AC=1;AN=1116 +NC_045512v2 28120 T28120C T C . . AC=1;AN=1116 +NC_045512v2 28121 C28121T C T . . AC=1;AN=1116 +NC_045512v2 28123 G28123T G T . . AC=1;AN=1116 +NC_045512v2 28124 T28124C T C . . AC=1;AN=1116 +NC_045512v2 28127 T28127C T C . . AC=1;AN=1116 +NC_045512v2 28133 A28133T A T . . AC=2;AN=1116 +NC_045512v2 28153 C28153T C T . . AC=2;AN=1116 +NC_045512v2 28165 A28165G A G . . AC=1;AN=1116 +NC_045512v2 28166 G28166A G A . . AC=1;AN=1116 +NC_045512v2 28167 G28167A G A . . AC=2;AN=1116 +NC_045512v2 28169 A28169G A G . . AC=2;AN=1116 +NC_045512v2 28178 G28178T G T . . AC=2;AN=1116 +NC_045512v2 28196 T28196C T C . . AC=1;AN=1116 +NC_045512v2 28198 G28198T G T . . AC=1;AN=1116 +NC_045512v2 28201 C28201T C T . . AC=1;AN=1116 +NC_045512v2 28202 G28202A G A . . AC=3;AN=1116 +NC_045512v2 28209 G28209T G T . . AC=2;AN=1116 +NC_045512v2 28214 C28214A C A . . AC=1;AN=1116 +NC_045512v2 28221 G28221T G T . . AC=2;AN=1116 +NC_045512v2 28230 G28230T G T . . AC=1;AN=1116 +NC_045512v2 28245 T28245C T C . . AC=1;AN=1116 +NC_045512v2 28250 T28250G T G . . AC=1;AN=1116 +NC_045512v2 28251 T28251G T G . . AC=1;AN=1116 +NC_045512v2 28254 A28254C,A28254G A C,G . . AC=1,1;AN=1116 +NC_045512v2 28256 C28256T C T . . AC=2;AN=1116 +NC_045512v2 28269 C28269T C T . . AC=2;AN=1116 +NC_045512v2 28271 A28271G A G . . AC=1;AN=1116 +NC_045512v2 28272 A28272T A T . . AC=6;AN=1116 +NC_045512v2 28273 A28273T A T . . AC=2;AN=1116 +NC_045512v2 28274 A28274G A G . . AC=2;AN=1116 +NC_045512v2 28276 G28276C G C . . AC=2;AN=1116 +NC_045512v2 28277 T28277C T C . . AC=1;AN=1116 +NC_045512v2 28280 G28280A,G28280C,G28280T G A,C,T . . AC=2,4,1;AN=1116 +NC_045512v2 28281 A28281T A T . . AC=4;AN=1116 +NC_045512v2 28282 T28282A T A . . AC=4;AN=1116 +NC_045512v2 28290 C28290T C T . . AC=1;AN=1116 +NC_045512v2 28292 C28292A C A . . AC=2;AN=1116 +NC_045512v2 28297 T28297C T C . . AC=1;AN=1116 +NC_045512v2 28300 G28300T G T . . AC=1;AN=1116 +NC_045512v2 28304 A28304T A T . . AC=1;AN=1116 +NC_045512v2 28307 G28307A,G28307C,G28307T G A,C,T . . AC=1,1,1;AN=1116 +NC_045512v2 28308 C28308G C G . . AC=2;AN=1116 +NC_045512v2 28310 C28310A,C28310T C A,T . . AC=3,5;AN=1116 +NC_045512v2 28311 C28311T C T . . AC=3;AN=1116 +NC_045512v2 28312 C28312T C T . . AC=2;AN=1116 +NC_045512v2 28315 C28315T C T . . AC=2;AN=1116 +NC_045512v2 28320 C28320T C T . . AC=2;AN=1116 +NC_045512v2 28321 G28321A,G28321T G A,T . . AC=2,4;AN=1116 +NC_045512v2 28325 G28325A,G28325T G A,T . . AC=1,2;AN=1116 +NC_045512v2 28336 A28336G A G . . AC=1;AN=1116 +NC_045512v2 28337 G28337A G A . . AC=1;AN=1116 +NC_045512v2 28338 A28338G A G . . AC=2;AN=1116 +NC_045512v2 28340 T28340C T C . . AC=1;AN=1116 +NC_045512v2 28344 C28344T C T . . AC=2;AN=1116 +NC_045512v2 28346 G28346T G T . . AC=1;AN=1116 +NC_045512v2 28348 C28348T C T . . AC=1;AN=1116 +NC_045512v2 28356 A28356G A G . . AC=2;AN=1116 +NC_045512v2 28360 T28360C T C . . AC=1;AN=1116 +NC_045512v2 28362 G28362C G C . . AC=1;AN=1116 +NC_045512v2 28367 C28367T C T . . AC=2;AN=1116 +NC_045512v2 28371 G28371T G T . . AC=2;AN=1116 +NC_045512v2 28373 G28373T G T . . AC=1;AN=1116 +NC_045512v2 28374 G28374T G T . . AC=1;AN=1116 +NC_045512v2 28375 G28375T G T . . AC=3;AN=1116 +NC_045512v2 28376 G28376T G T . . AC=1;AN=1116 +NC_045512v2 28378 G28378T G T . . AC=6;AN=1116 +NC_045512v2 28380 G28380A G A . . AC=2;AN=1116 +NC_045512v2 28389 A28389T A T . . AC=2;AN=1116 +NC_045512v2 28396 G28396A G A . . AC=2;AN=1116 +NC_045512v2 28411 C28411T C T . . AC=1;AN=1116 +NC_045512v2 28432 C28432T C T . . AC=1;AN=1116 +NC_045512v2 28436 G28436T G T . . AC=2;AN=1116 +NC_045512v2 28451 G28451C G C . . AC=1;AN=1116 +NC_045512v2 28453 C28453T C T . . AC=6;AN=1116 +NC_045512v2 28472 C28472T C T . . AC=3;AN=1116 +NC_045512v2 28476 G28476T G T . . AC=1;AN=1116 +NC_045512v2 28483 A28483G A G . . AC=1;AN=1116 +NC_045512v2 28487 G28487A G A . . AC=2;AN=1116 +NC_045512v2 28494 T28494C T C . . AC=1;AN=1116 +NC_045512v2 28500 C28500T C T . . AC=2;AN=1116 +NC_045512v2 28512 C28512G,C28512T C G,T . . AC=2,1;AN=1116 +NC_045512v2 28514 G28514T G T . . AC=2;AN=1116 +NC_045512v2 28541 G28541T G T . . AC=1;AN=1116 +NC_045512v2 28546 C28546A C A . . AC=1;AN=1116 +NC_045512v2 28557 G28557T G T . . AC=1;AN=1116 +NC_045512v2 28603 C28603T C T . . AC=5;AN=1116 +NC_045512v2 28609 C28609T C T . . AC=2;AN=1116 +NC_045512v2 28612 A28612G A G . . AC=1;AN=1116 +NC_045512v2 28621 G28621A G A . . AC=2;AN=1116 +NC_045512v2 28624 A28624T A T . . AC=1;AN=1116 +NC_045512v2 28628 G28628T G T . . AC=6;AN=1116 +NC_045512v2 28629 C28629T C T . . AC=1;AN=1116 +NC_045512v2 28630 T28630G T G . . AC=1;AN=1116 +NC_045512v2 28638 C28638A C A . . AC=2;AN=1116 +NC_045512v2 28651 C28651T C T . . AC=7;AN=1116 +NC_045512v2 28655 G28655A,G28655T G A,T . . AC=2,1;AN=1116 +NC_045512v2 28657 C28657T C T . . AC=5;AN=1116 +NC_045512v2 28674 C28674T C T . . AC=2;AN=1116 +NC_045512v2 28681 G28681A G A . . AC=1;AN=1116 +NC_045512v2 28690 G28690T G T . . AC=5;AN=1116 +NC_045512v2 28697 C28697T C T . . AC=2;AN=1116 +NC_045512v2 28699 A28699G A G . . AC=2;AN=1116 +NC_045512v2 28703 G28703C,G28703T G C,T . . AC=1,1;AN=1116 +NC_045512v2 28707 A28707T A T . . AC=1;AN=1116 +NC_045512v2 28708 C28708T C T . . AC=3;AN=1116 +NC_045512v2 28715 A28715T A T . . AC=2;AN=1116 +NC_045512v2 28720 C28720T C T . . AC=1;AN=1116 +NC_045512v2 28723 T28723C T C . . AC=1;AN=1116 +NC_045512v2 28724 C28724T C T . . AC=1;AN=1116 +NC_045512v2 28725 C28725T C T . . AC=2;AN=1116 +NC_045512v2 28727 G28727T G T . . AC=2;AN=1116 +NC_045512v2 28732 C28732T C T . . AC=1;AN=1116 +NC_045512v2 28744 C28744T C T . . AC=3;AN=1116 +NC_045512v2 28745 G28745A G A . . AC=1;AN=1116 +NC_045512v2 28754 C28754T C T . . AC=1;AN=1116 +NC_045512v2 28759 T28759C T C . . AC=2;AN=1116 +NC_045512v2 28760 C28760A C A . . AC=2;AN=1116 +NC_045512v2 28765 A28765T A T . . AC=1;AN=1116 +NC_045512v2 28770 C28770T C T . . AC=2;AN=1116 +NC_045512v2 28775 C28775T C T . . AC=1;AN=1116 +NC_045512v2 28808 G28808T G T . . AC=2;AN=1116 +NC_045512v2 28812 G28812T G T . . AC=1;AN=1116 +NC_045512v2 28813 T28813G T G . . AC=1;AN=1116 +NC_045512v2 28817 G28817T G T . . AC=2;AN=1116 +NC_045512v2 28819 C28819T C T . . AC=1;AN=1116 +NC_045512v2 28821 C28821A C A . . AC=4;AN=1116 +NC_045512v2 28824 C28824T C T . . AC=1;AN=1116 +NC_045512v2 28826 C28826T C T . . AC=1;AN=1116 +NC_045512v2 28830 C28830A C A . . AC=2;AN=1116 +NC_045512v2 28833 C28833T C T . . AC=10;AN=1116 +NC_045512v2 28836 C28836T C T . . AC=2;AN=1116 +NC_045512v2 28841 A28841G A G . . AC=2;AN=1116 +NC_045512v2 28842 G28842T G T . . AC=2;AN=1116 +NC_045512v2 28844 C28844T C T . . AC=1;AN=1116 +NC_045512v2 28845 G28845T G T . . AC=2;AN=1116 +NC_045512v2 28846 C28846T C T . . AC=2;AN=1116 +NC_045512v2 28847 A28847T A T . . AC=1;AN=1116 +NC_045512v2 28849 C28849T C T . . AC=1;AN=1116 +NC_045512v2 28851 G28851C,G28851T G C,T . . AC=2,6;AN=1116 +NC_045512v2 28853 T28853G T G . . AC=2;AN=1116 +NC_045512v2 28854 C28854T C T . . AC=95;AN=1116 +NC_045512v2 28857 G28857T G T . . AC=3;AN=1116 +NC_045512v2 28860 A28860G A G . . AC=1;AN=1116 +NC_045512v2 28863 C28863T C T . . AC=2;AN=1116 +NC_045512v2 28866 C28866T C T . . AC=2;AN=1116 +NC_045512v2 28868 C28868T C T . . AC=3;AN=1116 +NC_045512v2 28869 C28869T C T . . AC=11;AN=1116 +NC_045512v2 28875 G28875T G T . . AC=2;AN=1116 +NC_045512v2 28877 A28877G,A28877T A G,T . . AC=1,4;AN=1116 +NC_045512v2 28878 G28878C,G28878T G C,T . . AC=4,1;AN=1116 +NC_045512v2 28880 A28880G A G . . AC=2;AN=1116 +NC_045512v2 28881 G28881A G A . . AC=426;AN=1116 +NC_045512v2 28882 G28882A,G28882T G A,T . . AC=423,1;AN=1116 +NC_045512v2 28883 G28883C G C . . AC=423;AN=1116 +NC_045512v2 28884 G28884T G T . . AC=5;AN=1116 +NC_045512v2 28887 C28887T C T . . AC=36;AN=1116 +NC_045512v2 28890 C28890T C T . . AC=4;AN=1116 +NC_045512v2 28892 C28892T C T . . AC=3;AN=1116 +NC_045512v2 28893 C28893T C T . . AC=2;AN=1116 +NC_045512v2 28896 C28896T C T . . AC=1;AN=1116 +NC_045512v2 28897 T28897C T C . . AC=1;AN=1116 +NC_045512v2 28899 G28899A,G28899C,G28899T G A,C,T . . AC=1,2,10;AN=1116 +NC_045512v2 28900 A28900C A C . . AC=2;AN=1116 +NC_045512v2 28901 A28901G A G . . AC=1;AN=1116 +NC_045512v2 28903 G28903C,G28903T G C,T . . AC=1,4;AN=1116 +NC_045512v2 28905 C28905T C T . . AC=2;AN=1116 +NC_045512v2 28907 G28907A,G28907T G A,T . . AC=1,2;AN=1116 +NC_045512v2 28911 A28911T A T . . AC=2;AN=1116 +NC_045512v2 28913 G28913T G T . . AC=1;AN=1116 +NC_045512v2 28914 G28914T G T . . AC=3;AN=1116 +NC_045512v2 28916 G28916A G A . . AC=1;AN=1116 +NC_045512v2 28917 G28917T G T . . AC=1;AN=1116 +NC_045512v2 28932 C28932T C T . . AC=55;AN=1116 +NC_045512v2 28936 G28936A,G28936T G A,T . . AC=1,1;AN=1116 +NC_045512v2 28939 G28939T G T . . AC=1;AN=1116 +NC_045512v2 28940 C28940T C T . . AC=1;AN=1116 +NC_045512v2 28959 A28959G A G . . AC=3;AN=1116 +NC_045512v2 28960 G28960T G T . . AC=3;AN=1116 +NC_045512v2 28968 G28968T G T . . AC=1;AN=1116 +NC_045512v2 28969 C28969T C T . . AC=2;AN=1116 +NC_045512v2 28975 G28975C,G28975T G C,T . . AC=5,16;AN=1116 +NC_045512v2 28977 C28977T C T . . AC=4;AN=1116 +NC_045512v2 29010 T29010C T C . . AC=1;AN=1116 +NC_045512v2 29013 C29013T C T . . AC=3;AN=1116 +NC_045512v2 29024 G29024T G T . . AC=1;AN=1116 +NC_045512v2 29031 A29031T A T . . AC=1;AN=1116 +NC_045512v2 29044 G29044A G A . . AC=2;AN=1116 +NC_045512v2 29059 T29059C T C . . AC=1;AN=1116 +NC_045512v2 29072 G29072T G T . . AC=1;AN=1116 +NC_045512v2 29077 C29077T C T . . AC=1;AN=1116 +NC_045512v2 29085 C29085T C T . . AC=2;AN=1116 +NC_045512v2 29086 A29086T A T . . AC=1;AN=1116 +NC_045512v2 29095 C29095T C T . . AC=7;AN=1116 +NC_045512v2 29101 A29101G A G . . AC=1;AN=1116 +NC_045512v2 29115 A29115T A T . . AC=1;AN=1116 +NC_045512v2 29119 C29119T C T . . AC=2;AN=1116 +NC_045512v2 29128 T29128C T C . . AC=1;AN=1116 +NC_045512v2 29140 G29140A G A . . AC=1;AN=1116 +NC_045512v2 29143 A29143G A G . . AC=2;AN=1116 +NC_045512v2 29144 C29144T C T . . AC=2;AN=1116 +NC_045512v2 29148 T29148C T C . . AC=10;AN=1116 +NC_045512v2 29149 C29149T C T . . AC=3;AN=1116 +NC_045512v2 29171 C29171T C T . . AC=3;AN=1116 +NC_045512v2 29179 G29179T G T . . AC=6;AN=1116 +NC_045512v2 29185 T29185A T A . . AC=2;AN=1116 +NC_045512v2 29194 T29194C T C . . AC=1;AN=1116 +NC_045512v2 29195 G29195T G T . . AC=1;AN=1116 +NC_045512v2 29200 C29200T C T . . AC=5;AN=1116 +NC_045512v2 29203 C29203T C T . . AC=1;AN=1116 +NC_045512v2 29212 G29212A G A . . AC=1;AN=1116 +NC_045512v2 29227 G29227A,G29227T G A,T . . AC=4,3;AN=1116 +NC_045512v2 29239 G29239A G A . . AC=2;AN=1116 +NC_045512v2 29242 A29242G A G . . AC=1;AN=1116 +NC_045512v2 29247 C29247T C T . . AC=1;AN=1116 +NC_045512v2 29249 C29249T C T . . AC=1;AN=1116 +NC_045512v2 29253 C29253T C T . . AC=1;AN=1116 +NC_045512v2 29254 G29254A,G29254T G A,T . . AC=2,3;AN=1116 +NC_045512v2 29259 C29259T C T . . AC=1;AN=1116 +NC_045512v2 29260 G29260T G T . . AC=3;AN=1116 +NC_045512v2 29272 C29272T C T . . AC=3;AN=1116 +NC_045512v2 29274 C29274T C T . . AC=5;AN=1116 +NC_045512v2 29284 C29284T C T . . AC=3;AN=1116 +NC_045512v2 29290 G29290A G A . . AC=1;AN=1116 +NC_045512v2 29291 G29291A G A . . AC=2;AN=1116 +NC_045512v2 29296 C29296T C T . . AC=4;AN=1116 +NC_045512v2 29311 C29311T C T . . AC=2;AN=1116 +NC_045512v2 29315 G29315T G T . . AC=1;AN=1116 +NC_045512v2 29332 G29332T G T . . AC=1;AN=1116 +NC_045512v2 29350 A29350G A G . . AC=2;AN=1116 +NC_045512v2 29353 C29353T C T . . AC=5;AN=1116 +NC_045512v2 29358 C29358T C T . . AC=2;AN=1116 +NC_045512v2 29362 C29362T C T . . AC=4;AN=1116 +NC_045512v2 29363 C29363T C T . . AC=1;AN=1116 +NC_045512v2 29366 C29366T C T . . AC=3;AN=1116 +NC_045512v2 29367 C29367T C T . . AC=1;AN=1116 +NC_045512v2 29370 C29370G,C29370T C G,T . . AC=3,2;AN=1116 +NC_045512v2 29376 C29376T C T . . AC=1;AN=1116 +NC_045512v2 29384 G29384T G T . . AC=1;AN=1116 +NC_045512v2 29391 A29391G A G . . AC=2;AN=1116 +NC_045512v2 29392 G29392T G T . . AC=1;AN=1116 +NC_045512v2 29395 G29395A G A . . AC=2;AN=1116 +NC_045512v2 29399 G29399A G A . . AC=5;AN=1116 +NC_045512v2 29402 G29402T G T . . AC=8;AN=1116 +NC_045512v2 29421 C29421T C T . . AC=3;AN=1116 +NC_045512v2 29422 G29422A,G29422T G A,T . . AC=1,8;AN=1116 +NC_045512v2 29424 A29424T A T . . AC=1;AN=1116 +NC_045512v2 29427 G29427T G T . . AC=1;AN=1116 +NC_045512v2 29431 G29431T G T . . AC=1;AN=1116 +NC_045512v2 29434 G29434C G C . . AC=2;AN=1116 +NC_045512v2 29445 C29445T C T . . AC=3;AN=1116 +NC_045512v2 29449 G29449A,G29449T G A,T . . AC=1,3;AN=1116 +NC_045512v2 29451 C29451T C T . . AC=2;AN=1116 +NC_045512v2 29462 G29462C G C . . AC=1;AN=1116 +NC_045512v2 29464 T29464C T C . . AC=5;AN=1116 +NC_045512v2 29466 C29466T C T . . AC=2;AN=1116 +NC_045512v2 29468 G29468C G C . . AC=1;AN=1116 +NC_045512v2 29474 G29474T G T . . AC=7;AN=1116 +NC_045512v2 29503 C29503T C T . . AC=1;AN=1116 +NC_045512v2 29508 G29508A G A . . AC=2;AN=1116 +NC_045512v2 29509 C29509T C T . . AC=1;AN=1116 +NC_045512v2 29511 G29511T G T . . AC=2;AN=1116 +NC_045512v2 29517 A29517G A G . . AC=1;AN=1116 +NC_045512v2 29521 A29521T A T . . AC=3;AN=1116 +NC_045512v2 29527 G29527T G T . . AC=4;AN=1116 +NC_045512v2 29529 C29529T C T . . AC=1;AN=1116 +NC_045512v2 29535 C29535T C T . . AC=1;AN=1116 +NC_045512v2 29540 G29540A G A . . AC=19;AN=1116 +NC_045512v2 29541 C29541T C T . . AC=4;AN=1116 +NC_045512v2 29543 G29543T G T . . AC=4;AN=1116 +NC_045512v2 29546 C29546T C T . . AC=1;AN=1116 +NC_045512v2 29555 C29555T C T . . AC=5;AN=1116 +NC_045512v2 29567 A29567G A G . . AC=2;AN=1116 +NC_045512v2 29571 A29571T A T . . AC=1;AN=1116 +NC_045512v2 29572 C29572T C T . . AC=1;AN=1116 +NC_045512v2 29573 G29573A G A . . AC=1;AN=1116 +NC_045512v2 29580 C29580T C T . . AC=1;AN=1116 +NC_045512v2 29585 C29585T C T . . AC=1;AN=1116 +NC_045512v2 29604 T29604C T C . . AC=1;AN=1116 +NC_045512v2 29614 C29614T C T . . AC=9;AN=1116 +NC_045512v2 29622 A29622C A C . . AC=1;AN=1116 +NC_045512v2 29625 C29625T C T . . AC=3;AN=1116 +NC_045512v2 29628 G29628T G T . . AC=6;AN=1116 +NC_045512v2 29642 C29642T C T . . AC=3;AN=1116 +NC_045512v2 29645 G29645T G T . . AC=57;AN=1116 +NC_045512v2 29648 G29648T G T . . AC=1;AN=1116 +NC_045512v2 29661 T29661C T C . . AC=2;AN=1116 +NC_045512v2 29668 C29668T C T . . AC=2;AN=1116 +NC_045512v2 29675 C29675T C T . . AC=1;AN=1116 +NC_045512v2 29679 C29679T C T . . AC=1;AN=1116 +NC_045512v2 29685 T29685G T G . . AC=1;AN=1116 +NC_045512v2 29686 C29686T C T . . AC=4;AN=1116 +NC_045512v2 29688 G29688A,G29688T G A,T . . AC=1,3;AN=1116 +NC_045512v2 29690 G29690T G T . . AC=2;AN=1116 +NC_045512v2 29692 G29692T G T . . AC=4;AN=1116 +NC_045512v2 29700 A29700G A G . . AC=1;AN=1116 +NC_045512v2 29705 G29705T G T . . AC=7;AN=1116 +NC_045512v2 29706 G29706T G T . . AC=2;AN=1116 +NC_045512v2 29708 C29708T C T . . AC=2;AN=1116 +NC_045512v2 29719 C29719T C T . . AC=2;AN=1116 +NC_045512v2 29722 C29722T C T . . AC=2;AN=1116 +NC_045512v2 29730 C29730G C G . . AC=1;AN=1116 +NC_045512v2 29733 C29733T C T . . AC=3;AN=1116 +NC_045512v2 29734 G29734C G C . . AC=29;AN=1116 +NC_045512v2 29736 G29736A,G29736T G A,T . . AC=1,2;AN=1116 +NC_045512v2 29738 C29738T C T . . AC=3;AN=1116 +NC_045512v2 29739 C29739T C T . . AC=4;AN=1116 +NC_045512v2 29741 C29741T C T . . AC=1;AN=1116 +NC_045512v2 29742 G29742T G T . . AC=5;AN=1116 +NC_045512v2 29743 C29743T C T . . AC=2;AN=1116 +NC_045512v2 29744 G29744A G A . . AC=1;AN=1116 +NC_045512v2 29745 G29745A,G29745T G A,T . . AC=1,5;AN=1116 +NC_045512v2 29747 G29747T G T . . AC=5;AN=1116 +NC_045512v2 29750 C29750T C T . . AC=8;AN=1116 +NC_045512v2 29751 G29751C,G29751T G C,T . . AC=2,5;AN=1116 +NC_045512v2 29752 A29752T A T . . AC=1;AN=1116 +NC_045512v2 29754 C29754T C T . . AC=2;AN=1116 +NC_045512v2 29755 G29755T G T . . AC=4;AN=1116 +NC_045512v2 29757 G29757T G T . . AC=2;AN=1116 +NC_045512v2 29759 G29759T G T . . AC=1;AN=1116 +NC_045512v2 29762 C29762G,C29762T C G,T . . AC=1,2;AN=1116 +NC_045512v2 29764 G29764A,G29764T G A,T . . AC=1,2;AN=1116 +NC_045512v2 29767 A29767C A C . . AC=1;AN=1116 +NC_045512v2 29769 C29769T C T . . AC=3;AN=1116 +NC_045512v2 29771 A29771G A G . . AC=2;AN=1116 +NC_045512v2 29773 G29773T G T . . AC=3;AN=1116 +NC_045512v2 29774 C29774T C T . . AC=2;AN=1116 +NC_045512v2 29777 G29777T G T . . AC=2;AN=1116 +NC_045512v2 29778 G29778T G T . . AC=1;AN=1116 +NC_045512v2 29779 G29779A,G29779C,G29779T G A,C,T . . AC=1,1,6;AN=1116 +NC_045512v2 29784 C29784T C T . . AC=4;AN=1116 +NC_045512v2 29785 T29785A T A . . AC=1;AN=1116 +NC_045512v2 29797 A29797G A G . . AC=1;AN=1116
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_15_tree.nh Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1 @@ 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_16_path_mutations.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,4 @@ +England/MILK-A474DA/2020|20-10-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/MILK-A474DA/2020|20-10-06:A6659G +England/ALDP-AA169C/2020|20-10-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/ALDP-AA169C/2020|20-10-22:C23191T,G23909A +England/MILK-B04890/2020|20-10-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T node_242:C556T,C23525T England/MILK-B04890/2020|20-10-24:G8371A,C23679T +England/CAMC-A649C9/2020|20-10-10 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T node_242:C556T,C23525T England/CAMC-A649C9/2020|20-10-10:C6813T,C13620T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_16_sample_names.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,4 @@ +England/MILK-A474DA/2020|20-10-06 +England/ALDP-AA169C/2020|20-10-22 +England/MILK-B04890/2020|20-10-24 +England/CAMC-A649C9/2020|20-10-10
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+USA/CA-CZB-1041/2020|MT438759.1|20-04-22: A6313G,T7191C,A7193G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06: G7273A +node_667: G29711T +node_668: C1218T,G27806T +England/ALDP-52C0FA/2020|20-06-01: C9870T,C10702T,T23047C +England/LIVE-9D7D6/2020|20-04-15: C27493T +node_669: A4838G,C7420T,C14937T,C20148T +USA/WI-UW-298/2020|MT706406.1|20-04-13: C7728T,C21637T +USA/WI-UW-314/2020|MT706422.1|20-04-16: G25907T +node_670: T2116A +USA/WI-UW-325/2020|MT706432.1|20-04-24: C12880T,C28854T +USA/WI-UW-290/2020|MT706398.1|20-04-08: A10070C,G28703C,C28849T +node_671: C28854T +node_672: C12710T +Scotland/CVR3488/2020|20-05-12: C10335T,C16428T,G22139C,C27737T +Scotland/CVR780/2020|20-03-27: C5997T +node_673: C11752T,C25665T,A27700G,T28854C,T28912C +Japan/TKYE63557_2020/2020|LC581365.1|20-03: C26447T +Japan/TKYE64688_2020/2020|LC581375.1|20-03: T1907G,C4456T,A10471G +node_674: C6312A,C13730T,C23929T,C28311T +USA/CA-QDX-33/2020|MT614459.1|20-03-15: C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13: C11455T +node_675: C6310A,C19524T +MYS/188407/2020|MT372480.1|20-03-18: T25473C +AUS/VIC961/2020|MT451653.1|20-03-27: A9433G,T19035A,T29793C +node_676: C8782T,T28144C +node_677: A23403G,C26088T +node_678: G23403A +node_679: G9928T +Scotland/EDB5629/2020|20-03-24: G27870T +Scotland/EDB5040/2020|20-04-02: C593T +Scotland/EDB1824/2020|20-04-16: C8240T,T8941C,C9438T,C19185T,G27358T +Spain/H12_46/2020|LR884009.1|20-04-08: C7967T,C16694T +node_680: C3037T,A20268G +Spain/R11/2020|LR884126.1|20-03-06: T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07: +HKG/HKU-904a/2020|MT365032.1|20-01-30: C4158T,C18828T +node_681: A17858G,C18060T +USA/MN-MDH-1475/2020|MT920008.1|20-03-23: A7966G,A22422G +USA/CA-CZB-1615/2020|MT628267.1|20-04-14: C4776T,C9491T,C17747T,G28086T +node_682: T9477A,C14805T,G25979T +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17: +node_683: C28863T +Spain/R10_33/2020|LR884127.1|20-03-02: T25979G +node_684: C28657T +node_685: C4540T +node_686: C25714T,C26029A +Scotland/CVR3062/2020|20-04-24: G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14: C15274T +node_687: C28311T +England/OXON-B0922/2020|20-03-28: C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31: G17632A +node_688: C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +USA/WA-S4100/2021|MW555971.1|21-01-18: G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19: C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +node_689: G22468T,G28878A,G29742A +node_690: T22468G +node_691: C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +England/ALDP-CB55B4/2020|20-12-20: C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21: G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +node_692: G16381A,T17877C,G25500T +USA/WI-UW-06/2020|MT772088.1|20-03-21: C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24: C25854T +node_693: C24370T +GHA/34927_S20/2020|MT890226.1|20-05-23: C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24: C2306T,C5672T,C5986T,C13515T,G24926T +node_694: T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07: C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26: A4984T,A7854G,A21062G,A28254C +node_695: A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25: G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03: C6541T,C9988T,T25904C +node_696: G9802A,G11230T,A16512G,C19951T,G26428T +England/CAMC-C91F38/2020|20-12-11: C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10: C10818T,T11230G,C25702T +node_697: T490A,C3177T,C24034T,T26729C,G28077C +USA/COVID20-0008/2020|MT764174.1|20-03-10: T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28: +node_698: C6696T +England/LIVE-9E66F/2020|20-04-10: C7765T,G10256T +Scotland/CVR705/2020|20-03-26: C11001T,G17122T +node_699: G1397A,T28688C,G29742T +England/PHEC-1A601/2020|20-03-04: A19526G +England/PHEC-2275E/2020|20-06-22: G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +node_700: A1079C,C9319T,C19862T,T27384C +USA/CA-QDX-1421/2020|MW065371.1|20-03-18: C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19: C6701T,T7225C +node_701: C1076T +AUS/VIC1255/2020|MT451830.1|20-04-11: T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29: A28955T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_17_path_clades.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,623 @@ +clade root_id from_tree_root +19A node_1 +B node_1 +B.26 node_4 > C7423T +B.48 node_5 > C20270T +B.15 node_8 > T4949C +B.5 node_9 > C29635T +B.54 node_10 > C14805T,G26144T +B.47 node_24 > A10982G +B.20 node_660 > A14940G +B.52 node_661 > A1904G,C8090T,C10789T +B.11 node_662 > T514C +B.46 node_663 > A12557G,C24904T,A27359G +B.1.14 node_664 > C25692T +B.27 node_665 > G29032A +B.19 node_666 > C10277T +B.6 node_674 > C6312A,C13730T,C23929T,C28311T +19B node_676 > C8782T,T28144C +A node_676 > C8782T,T28144C +B.10 node_698 > C6696T +B.4 node_699 > G1397A,T28688C,G29742T +B.23 node_6 > C20270T > A29683T +B.33 node_11 > C14805T,G26144T > T17247C +B.28 node_18 > C14805T,G26144T > G28842T +B.29 node_19 > C14805T,G26144T > C23707T +B.40 node_20 > C14805T,G26144T > A2480G,C2558T +B.30 node_21 > C14805T,G26144T > A4236G,T25655C +B.41 node_22 > C14805T,G26144T > G5572T +B.31 node_23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 node_26 > C241T > C14408T +B.3 node_658 > C241T > T241C,G1440A,G2891A +B.18 node_668 > G29711T > C1218T,G27806T +B.13 node_669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 node_670 > G29711T > T2116A +B.45 node_672 > C28854T > C12710T +B.12 node_673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 node_675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 node_681 > C8782T,T28144C > A17858G,C18060T +A.2 node_682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 node_697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 node_700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 node_701 > G1397A,T28688C,G29742T > C1076T +B.37 node_13 > C14805T,G26144T > T17247C > C8078T +B.35 node_14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 node_15 > C14805T,G26144T > T17247C > A1587G +B.34 node_16 > C14805T,G26144T > T17247C > C988T +B.39 node_17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 node_659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 node_678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 node_680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 node_695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 node_696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A node_28 > C241T > C14408T > A23403G > C3037T +B.1.108 node_28 > C241T > C14408T > A23403G > C3037T +A.23.1 node_691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 node_692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 node_693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 node_694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 node_45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 node_46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 node_47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 node_48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 node_49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 node_50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 node_51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 node_52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 node_53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 node_267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 node_268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 node_272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 node_273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 node_274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 node_275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 node_341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 node_359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 node_360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 node_394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 node_395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 node_396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 node_397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 node_398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 node_400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 node_401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 node_402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 node_403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 node_404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 node_405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 node_406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 node_407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 node_408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 node_412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 node_413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 node_414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 node_415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 node_416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 node_417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 node_418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 node_419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 node_420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 node_421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 node_422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 node_423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 node_424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 node_425 > C241T > C14408T > A23403G > C3037T > G29422T +20B node_426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 node_653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 node_654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 node_657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 node_688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 node_32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 node_33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 node_34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 node_38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 node_39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 node_40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 node_41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 node_42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 node_43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 node_44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 node_54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 node_211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 node_269 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 node_271 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +B.1.415 node_276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 node_304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 node_305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 node_307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 node_308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 node_311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 node_312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 node_313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 node_314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 node_315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 node_342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 node_343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 node_344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 node_345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 node_346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 node_347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 node_348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 node_349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 node_350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 node_351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 node_352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 node_353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 node_355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 node_356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 node_357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 node_358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 node_399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 node_410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 node_411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 node_427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +B.1.1.77 node_655 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C +A.2.3 node_686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 node_687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 node_35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 node_37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 node_60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 node_64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 node_65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 node_66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 node_67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 node_68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 node_69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 node_78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 node_79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 node_80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 node_81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 node_82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 node_83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 node_84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 node_85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 node_105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 node_106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 node_107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 node_108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 node_121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 node_122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 node_123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 node_124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 node_125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 node_126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 node_127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 node_128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 node_129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 node_141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 node_142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 node_146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 node_147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 node_148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 node_149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 node_150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 node_151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 node_152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 node_153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 node_154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 node_155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 node_156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 node_157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 node_158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 node_160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 node_161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 node_162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 node_163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 node_164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 node_165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 node_166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 node_167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 node_168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 node_169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 node_170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 node_171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 node_172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 node_173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 node_174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 node_175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 node_176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 node_177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 node_178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 node_179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 node_180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 node_181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 node_182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 node_183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 node_184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 node_185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 node_186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 node_187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 node_188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 node_189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 node_190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 node_192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 node_199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 node_200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 node_201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 node_202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 node_203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 node_204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 node_205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 node_206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 node_207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 node_208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 node_209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 node_210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 node_249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 node_250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 node_251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 node_252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 node_253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 node_254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 node_255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 node_256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 node_257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 node_258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 node_259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 node_265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 node_266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 node_278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 node_279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 node_280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 node_281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 node_282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 node_283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 node_284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 node_285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 node_287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 node_288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 node_289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 node_290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 node_291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 node_292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 node_296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 node_297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 node_298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 node_299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 node_300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 node_301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 node_302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 node_303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 node_306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 node_340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.177.11 node_365 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 node_366 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T +B.1.177.23 node_381 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.177.16 node_385 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C28310A +B.1.177.15 node_393 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.1.4 node_429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 node_447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 node_448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 node_449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 node_450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 node_451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 node_452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 node_453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 node_454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 node_455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 node_456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 node_457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 node_458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 node_459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 node_460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 node_461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 node_462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 node_463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 node_464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 node_465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 node_467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 node_468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 node_469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 node_470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 node_471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 node_472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 node_473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 node_474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 node_475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 node_476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 node_483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 node_484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 node_485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 node_486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 node_487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 node_489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 node_490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 node_491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 node_492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 node_493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 node_494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 node_495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 node_496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 node_497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 node_499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 node_510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 node_511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 node_512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 node_519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 node_520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 node_521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 node_542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 node_551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 node_552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 node_553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 node_554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 node_555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 node_556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 node_557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.227 node_558 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.133 node_559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 node_561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 node_562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.198 node_563 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.1.97 node_564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 node_565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 node_566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 node_570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 node_571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 node_574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 node_578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 node_579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 node_580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 node_581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 node_582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 node_583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 node_588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 node_593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 node_594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 node_595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 node_596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 node_597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 node_598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 node_604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 node_605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 node_606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 node_607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 node_608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 node_609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 node_612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 node_613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 node_614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 node_615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 node_616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 node_621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 node_625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 node_628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 node_629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 node_630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.315 node_631 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.1.280 node_632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 node_633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 node_634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 node_635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 node_636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 node_637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 node_638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 node_639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 node_640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 node_641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 node_642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 node_643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 node_644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 node_645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 node_646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 node_647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 node_648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 node_649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 node_650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 node_651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 node_652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.1.224 node_656 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.110.1 node_59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 node_71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 node_72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 node_74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 node_75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 node_87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 node_88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 node_89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 node_90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 node_101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 node_102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 node_103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 node_104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +20G node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 node_114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 node_115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 node_117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 node_118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 node_119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 node_120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 node_131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 node_132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 node_134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.375 node_139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 node_140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 node_144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 node_145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 node_159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 node_194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 node_198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 node_213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.523 node_217 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +B.1.454 node_218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 node_219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 node_220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 node_222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 node_223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.160 node_238 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 node_243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 node_244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 node_248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 node_261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 node_262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 node_263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 node_264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 node_286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 node_294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 node_295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 node_310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.256 node_339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.177.26 node_375 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.25 node_380 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.17 node_383 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > C22088T,C29686T +B.1.177.13 node_384 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > G27877T +B.1.177.19 node_387 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > T29185A +B.1.177.20 node_388 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > C10626T +B.1.177.18 node_389 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > G25440T,C27752T +B.1.177.10 node_391 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G28321A +B.1.177.9 node_392 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G21800T,A22053C +B.1.1.74 node_430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 node_431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 node_435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 node_436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 node_437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 node_439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 node_440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 node_441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 node_442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 node_445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 node_446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 node_466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 node_482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 node_488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 node_498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 node_513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.303 node_528 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.305 node_529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 node_530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 node_531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 node_532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 node_534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 node_535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 node_536 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T +B.1.1.272 node_537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 node_538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 node_539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 node_540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 node_541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 node_543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 node_549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 node_550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 node_560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 node_567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 node_568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 node_569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 node_572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 node_576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 node_577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 node_584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 node_585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 node_586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 node_587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 node_590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 node_591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 node_592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 node_600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 node_601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 node_602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 node_603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 node_610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 node_611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 node_617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 node_622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.219 node_626 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > G5572A,A6366T,G11410A,G25776T +B.1.1.218 node_627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 node_57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 node_76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 node_92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 node_93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 node_94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 node_95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 node_96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 node_97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 node_98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.505 node_99 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +B.1.504 node_100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 node_112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 node_113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 node_116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.427 node_136 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > G9738C,G13713A,C16394T +B.1.94 node_137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T +B.1.282 node_196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 node_197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.466 node_215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > C21614T +B.1.465 node_216 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > T241C,A8821G,C15752T,T26066C +B.1.36.20 node_221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.23 node_232 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.16 node_233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 node_234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.24 node_235 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 node_236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 node_237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 node_246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 node_247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258 node_319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A +B.1.177.21 node_368 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A +B.1.177.22 node_369 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T +B.1.177.2 node_377 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G +B.1.177.3 node_378 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T +B.1.177.4 node_379 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T +B.1.1.289 node_433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 node_434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +B.1.316 node_438 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C +R.2 node_443 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +20J/501Y.V3 node_478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 node_480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 node_481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 node_502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 node_503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 node_504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 node_505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.16 node_506 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 node_507 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +C.2 node_508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 node_509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.294 node_515 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C +B.1.1.293 node_518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 node_523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 node_524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 node_526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 node_527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 node_533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.146 node_573 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T +B.1.429 node_138 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T +B.1.36.1 node_225 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +B.1.36.28 node_226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 node_227 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T +B.1.36.27 node_228 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.21 node_230 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 node_231 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +20A.EU2 node_240 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.258.14 node_334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T +B.1.258.2 node_336 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 node_338 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T +B.1.177.6 node_370 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T +B.1.177.12 node_371 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T +B.1.177.5 node_372 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T +B.1.177.7 node_373 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T +B.1.177.8 node_374 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T +N.1 node_545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 node_546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 node_547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T +B.1.258.16 node_321 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T +G.1 node_337 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +M.1 node_517 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.160.7 node_242 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.258.6 node_324 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 node_325 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.258.10 node_327 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G +B.1.258.12 node_328 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A +B.1.258.17 node_333 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.258.4 node_331 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 node_332 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_17_path_mutations.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1234 @@ +England/BRIS-1853249/2020|20-04-02 node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 node_2:C24034T +Wales/PHWC-25B04/2020|20-03-24 node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G +Wales/LIVE-A6831/2020|20-03-16 node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C +Scotland/EDB1317/2020|20-04-09 node_4:C7423T Scotland/EDB1317/2020|20-04-09:G4207A,T7423C +Scotland/EDB354/2020|20-03-30 node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C +England/SHEF-BFF8B/2020|20-03-25 node_5:C20270T England/SHEF-BFF8B/2020|20-03-25:C1473T +England/SHEF-BFFC7/2020|20-03-25 node_8:T4949C England/SHEF-BFFC7/2020|20-03-25:G28027T +England/PHEC-1E01E/2020|20-04-03 node_8:T4949C England/PHEC-1E01E/2020|20-04-03:C22445T +DP0476/2020|LC571003.1|20-02-16 node_9:C29635T DP0476/2020|LC571003.1|20-02-16:C29592T +DP0191/2020|LC570980.1|20-02-15 node_9:C29635T DP0191/2020|LC570980.1|20-02-15:A3854G +England/EXET-135818/2020|20-04-11 node_10:C14805T,G26144T England/EXET-135818/2020|20-04-11:C7703T,T9352C,G27201T +England/LIVE-A5D06/2020|20-03-17 node_24:A10982G England/LIVE-A5D06/2020|20-03-17:C6681T,G11801A +England/LIVE-A065B/2020|20-05-27 node_24:A10982G England/LIVE-A065B/2020|20-05-27:C823T,C8752T,A9741C,C19961T,C26333T,C26408T +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 node_660:A14940G USA/CA-CZB-1091/2020|MT460091.1|20-05-01:C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 node_660:A14940G USA/CA-CZB-11876/2020|MW276506.1|20-04-08:A26120G +Scotland/GCVR-171160/2020|20-03-26 node_661:A1904G,C8090T,C10789T Scotland/GCVR-171160/2020|20-03-26:A3958G,C5826T,C17074T +England/BRIS-130E2A/2020|20-03-24 node_661:A1904G,C8090T,C10789T England/BRIS-130E2A/2020|20-03-24:C16658A,C17733T +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 node_662:T514C USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24:C22033A 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G805A,C5673T,C11960T,C27567T +Scotland/CVR2435/2020|20-04-14: C15274T +node_687: C28311T +England/OXON-B0922/2020|20-03-28: C147A,G6894T,C18928T,A21489C +AUS/VIC995/2020|MT451680.1|20-03-31: G17632A +node_688: C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +USA/WA-S4100/2021|MW555971.1|21-01-18: G5234A,C12890T,C19944T +USA/WA-S4074/2021|MW555949.1|21-01-19: C3165T,T10105G,C11563T,G22525A,G25311T,C27630T +node_689: G22468T,G28878A,G29742A +node_690: T22468G +node_691: C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +England/ALDP-CB55B4/2020|20-12-20: C4940T,G21867T,C29523T +England/CAMC-CF4B5D/2020|20-12-21: G529A,A963G,G2246A,A5068G,C12525T,G21255C,T23698A,G28881A +node_692: G16381A,T17877C,G25500T +USA/WI-UW-06/2020|MT772088.1|20-03-21: C1929T,C20316T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24: C25854T +node_693: C24370T +GHA/34927_S20/2020|MT890226.1|20-05-23: C27641T,G29402T +GHA/35563_S37/2020|MT890230.1|20-05-24: C2306T,C5672T,C5986T,C13515T,G24926T +node_694: T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07: C1385T,A1395G,A9750G,A26069G +USA/GA-CDC-LC0010641/2021|MW640882.1|21-01-26: A4984T,A7854G,A21062G,A28254C +node_695: A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25: G16236A,C16694T,G21624A,A21625C,C22097T,G29773T +EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03: C6541T,C9988T,T25904C +node_696: G9802A,G11230T,A16512G,C19951T,G26428T +England/CAMC-C91F38/2020|20-12-11: C4438T,G6446T,C6638T,C10834T,C12469T,C16466T,C16726T,G17140T,G21210C,T22287C,G23402A,C26299T,T27134C,A28273T,G29227A +SLE/KGH-G-8626/2020|MT872492.1|20-04-10: C10818T,T11230G,C25702T +node_697: T490A,C3177T,C24034T,T26729C,G28077C +USA/COVID20-0008/2020|MT764174.1|20-03-10: T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28: +node_698: C6696T +England/LIVE-9E66F/2020|20-04-10: C7765T,G10256T +Scotland/CVR705/2020|20-03-26: C11001T,G17122T +node_699: G1397A,T28688C,G29742T +England/PHEC-1A601/2020|20-03-04: A19526G +England/PHEC-2275E/2020|20-06-22: G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T +node_700: A1079C,C9319T,C19862T,T27384C +USA/CA-QDX-1421/2020|MW065371.1|20-03-18: C7764T,C29625T +USA/CA-QDX-2080/2020|MW190832.1|20-03-19: C6701T,T7225C +node_701: C1076T +AUS/VIC1255/2020|MT451830.1|20-04-11: T13857C,C25469T,C27964T +AUS/VIC1878/2020|MT745600.1|20-03-29: A28955T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_path_clades.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,623 @@ +clade root_id from_tree_root +19A node_1 +B node_1 +B.26 node_4 > C7423T +B.48 node_5 > C20270T +B.15 node_8 > T4949C +B.5 node_9 > C29635T +B.54 node_10 > C14805T,G26144T +B.47 node_24 > A10982G +B.20 node_660 > A14940G +B.52 node_661 > A1904G,C8090T,C10789T +B.11 node_662 > T514C +B.46 node_663 > A12557G,C24904T,A27359G +B.1.14 node_664 > C25692T +B.27 node_665 > G29032A +B.19 node_666 > C10277T +B.6 node_674 > C6312A,C13730T,C23929T,C28311T +19B node_676 > C8782T,T28144C +A node_676 > C8782T,T28144C +B.10 node_698 > C6696T +B.4 node_699 > G1397A,T28688C,G29742T +B.23 node_6 > C20270T > A29683T +B.33 node_11 > C14805T,G26144T > T17247C +B.28 node_18 > C14805T,G26144T > G28842T +B.29 node_19 > C14805T,G26144T > C23707T +B.40 node_20 > C14805T,G26144T > A2480G,C2558T +B.30 node_21 > C14805T,G26144T > A4236G,T25655C +B.41 node_22 > C14805T,G26144T > G5572T +B.31 node_23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 node_26 > C241T > C14408T +B.3 node_658 > C241T > T241C,G1440A,G2891A +B.18 node_668 > G29711T > C1218T,G27806T +B.13 node_669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 node_670 > G29711T > T2116A +B.45 node_672 > C28854T > C12710T +B.12 node_673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 node_675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 node_681 > C8782T,T28144C > A17858G,C18060T +A.2 node_682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 node_697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 node_700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 node_701 > G1397A,T28688C,G29742T > C1076T +B.37 node_13 > C14805T,G26144T > T17247C > C8078T +B.35 node_14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 node_15 > C14805T,G26144T > T17247C > A1587G +B.34 node_16 > C14805T,G26144T > T17247C > C988T +B.39 node_17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 node_659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 node_678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 node_680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 node_695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 node_696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A node_28 > C241T > C14408T > A23403G > C3037T +B.1.108 node_28 > C241T > C14408T > A23403G > C3037T +A.23.1 node_691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 node_692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 node_693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 node_694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 node_45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 node_46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 node_47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 node_48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 node_49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 node_50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 node_51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 node_52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 node_53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 node_267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 node_268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 node_272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 node_273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 node_274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 node_275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 node_341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 node_359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 node_360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 node_394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 node_395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 node_396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 node_397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 node_398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 node_400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 node_401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 node_402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 node_403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 node_404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 node_405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 node_406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 node_407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 node_408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 node_412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 node_413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 node_414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 node_415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 node_416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 node_417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 node_418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 node_419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 node_420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 node_421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 node_422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 node_423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 node_424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 node_425 > C241T > C14408T > A23403G > C3037T > G29422T +20B node_426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 node_653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 node_654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 node_657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 node_688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 node_32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 node_33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 node_34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 node_38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 node_39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 node_40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 node_41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 node_42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 node_43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 node_44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 node_54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 node_211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 node_269 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 node_271 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +B.1.415 node_276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 node_304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 node_305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 node_307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 node_308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 node_311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 node_312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 node_313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 node_314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 node_315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 node_342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 node_343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 node_344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 node_345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 node_346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 node_347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 node_348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 node_349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 node_350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 node_351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 node_352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 node_353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 node_355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 node_356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 node_357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 node_358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 node_399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 node_410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 node_411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 node_427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +B.1.1.77 node_655 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C +A.2.3 node_686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 node_687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 node_35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 node_37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 node_60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 node_64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 node_65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 node_66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 node_67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 node_68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 node_69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 node_78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 node_79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 node_80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 node_81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 node_82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 node_83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 node_84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 node_85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 node_105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 node_106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 node_107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 node_108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 node_121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 node_122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 node_123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 node_124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 node_125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 node_126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 node_127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 node_128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 node_129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 node_141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 node_142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 node_146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 node_147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 node_148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 node_149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 node_150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 node_151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 node_152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 node_153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 node_154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 node_155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 node_156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 node_157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 node_158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 node_160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 node_161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 node_162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 node_163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 node_164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 node_165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 node_166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 node_167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 node_168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 node_169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 node_170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 node_171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 node_172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 node_173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 node_174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 node_175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 node_176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 node_177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 node_178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 node_179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 node_180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 node_181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 node_182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 node_183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 node_184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 node_185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 node_186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 node_187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 node_188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 node_189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 node_190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 node_192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 node_199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 node_200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 node_201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 node_202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 node_203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 node_204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 node_205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 node_206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 node_207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 node_208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 node_209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 node_210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 node_249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 node_250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 node_251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 node_252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 node_253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 node_254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 node_255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 node_256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 node_257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 node_258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 node_259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 node_265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 node_266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 node_278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 node_279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 node_280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 node_281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 node_282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 node_283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 node_284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 node_285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 node_287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 node_288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 node_289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 node_290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 node_291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 node_292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 node_296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 node_297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 node_298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 node_299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 node_300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 node_301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 node_302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 node_303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 node_306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 node_340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.177.11 node_365 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 node_366 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T +B.1.177.23 node_381 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.177.16 node_385 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C28310A +B.1.177.15 node_393 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.1.4 node_429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 node_447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 node_448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 node_449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 node_450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 node_451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 node_452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 node_453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 node_454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 node_455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 node_456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 node_457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 node_458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 node_459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 node_460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 node_461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 node_462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 node_463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 node_464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 node_465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 node_467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 node_468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 node_469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 node_470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 node_471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 node_472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 node_473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 node_474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 node_475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 node_476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 node_483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 node_484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 node_485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 node_486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 node_487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 node_489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 node_490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 node_491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 node_492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 node_493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 node_494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 node_495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 node_496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 node_497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 node_499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 node_510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 node_511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 node_512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 node_519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 node_520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 node_521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 node_542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 node_551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 node_552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 node_553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 node_554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 node_555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 node_556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 node_557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.227 node_558 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.133 node_559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 node_561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 node_562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.198 node_563 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.1.97 node_564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 node_565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 node_566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 node_570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 node_571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 node_574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 node_578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 node_579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 node_580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 node_581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 node_582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 node_583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 node_588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 node_593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 node_594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 node_595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 node_596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 node_597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 node_598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 node_604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 node_605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 node_606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 node_607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 node_608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 node_609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 node_612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 node_613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 node_614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 node_615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 node_616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 node_621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 node_625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 node_628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 node_629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 node_630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.315 node_631 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.1.280 node_632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 node_633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 node_634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 node_635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 node_636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 node_637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 node_638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 node_639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 node_640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 node_641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 node_642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 node_643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 node_644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 node_645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 node_646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 node_647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 node_648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 node_649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 node_650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 node_651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 node_652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.1.224 node_656 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.110.1 node_59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 node_71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 node_72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 node_74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 node_75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 node_87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 node_88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 node_89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 node_90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 node_101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 node_102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 node_103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 node_104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +20G node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 node_114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 node_115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 node_117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 node_118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 node_119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 node_120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 node_131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 node_132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 node_134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.375 node_139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 node_140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 node_144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 node_145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 node_159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 node_194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 node_198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 node_213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.523 node_217 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +B.1.454 node_218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 node_219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 node_220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 node_222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 node_223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.160 node_238 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 node_243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 node_244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 node_248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 node_261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 node_262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 node_263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 node_264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 node_286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 node_294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 node_295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 node_310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.256 node_339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.177.26 node_375 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.25 node_380 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.17 node_383 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > C22088T,C29686T +B.1.177.13 node_384 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > G27877T +B.1.177.19 node_387 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > T29185A +B.1.177.20 node_388 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > C10626T +B.1.177.18 node_389 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > G25440T,C27752T +B.1.177.10 node_391 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G28321A +B.1.177.9 node_392 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G21800T,A22053C +B.1.1.74 node_430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 node_431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 node_435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 node_436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 node_437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 node_439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 node_440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 node_441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 node_442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 node_445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 node_446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 node_466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 node_482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 node_488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 node_498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 node_513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.303 node_528 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.305 node_529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 node_530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 node_531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 node_532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 node_534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 node_535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 node_536 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T +B.1.1.272 node_537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 node_538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 node_539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 node_540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 node_541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 node_543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 node_549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 node_550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 node_560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 node_567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 node_568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 node_569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 node_572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 node_576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 node_577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 node_584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 node_585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 node_586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 node_587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 node_590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 node_591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 node_592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 node_600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 node_601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 node_602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 node_603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 node_610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 node_611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 node_617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 node_622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.219 node_626 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > G5572A,A6366T,G11410A,G25776T +B.1.1.218 node_627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 node_57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 node_76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 node_92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 node_93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 node_94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 node_95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 node_96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 node_97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 node_98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.505 node_99 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +B.1.504 node_100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 node_112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 node_113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 node_116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.427 node_136 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > G9738C,G13713A,C16394T +B.1.94 node_137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T +B.1.282 node_196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 node_197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.466 node_215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > C21614T +B.1.465 node_216 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > T241C,A8821G,C15752T,T26066C +B.1.36.20 node_221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.23 node_232 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.16 node_233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 node_234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.24 node_235 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 node_236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 node_237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 node_246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 node_247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258 node_319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A +B.1.177.21 node_368 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A +B.1.177.22 node_369 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T +B.1.177.2 node_377 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G +B.1.177.3 node_378 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T +B.1.177.4 node_379 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T +B.1.1.289 node_433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 node_434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +B.1.316 node_438 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C +R.2 node_443 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +20J/501Y.V3 node_478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 node_480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 node_481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 node_502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 node_503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 node_504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 node_505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.16 node_506 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 node_507 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +C.2 node_508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 node_509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.294 node_515 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C +B.1.1.293 node_518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 node_523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 node_524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 node_526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 node_527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 node_533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.146 node_573 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T +B.1.429 node_138 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T +B.1.36.1 node_225 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +B.1.36.28 node_226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 node_227 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T +B.1.36.27 node_228 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.21 node_230 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 node_231 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +20A.EU2 node_240 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.258.14 node_334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T +B.1.258.2 node_336 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 node_338 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T +B.1.177.6 node_370 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T +B.1.177.12 node_371 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T +B.1.177.5 node_372 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T +B.1.177.7 node_373 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T +B.1.177.8 node_374 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T +N.1 node_545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 node_546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 node_547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T +B.1.258.16 node_321 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T +G.1 node_337 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +M.1 node_517 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.160.7 node_242 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.258.6 node_324 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 node_325 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.258.10 node_327 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G +B.1.258.12 node_328 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A +B.1.258.17 node_333 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.258.4 node_331 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 node_332 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_18_path_mutations.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,441 @@ +England/BRIS-1853249/2020|20-04-02 node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 node_2:C24034T +Wales/PHWC-25B04/2020|20-03-24 node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G +Wales/LIVE-A6831/2020|20-03-16 node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C +Scotland/EDB354/2020|20-03-30 node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C +England/SHEF-BFF8B/2020|20-03-25 node_5:C20270T England/SHEF-BFF8B/2020|20-03-25:C1473T +England/SHEF-BFFC7/2020|20-03-25 node_8:T4949C England/SHEF-BFFC7/2020|20-03-25:G28027T +England/PHEC-1E01E/2020|20-04-03 node_8:T4949C England/PHEC-1E01E/2020|20-04-03:C22445T +DP0476/2020|LC571003.1|20-02-16 node_9:C29635T DP0476/2020|LC571003.1|20-02-16:C29592T +DP0191/2020|LC570980.1|20-02-15 node_9:C29635T DP0191/2020|LC570980.1|20-02-15:A3854G +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 node_660:A14940G USA/CA-CZB-1091/2020|MT460091.1|20-05-01:C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 node_660:A14940G USA/CA-CZB-11876/2020|MW276506.1|20-04-08:A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 node_662:T514C USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24:C22033A +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 node_663:A12557G,C24904T,A27359G USA/CA-QDX-1986/2020|MW190732.1|20-03-18:C11050T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 node_664:C25692T USA/CA-CZB-1015/2020|MT438733.1|20-04-22:T15867A +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 node_666:C10277T USA/CA-CZB-1051/2020|MT449644.1|20-04-06:G7273A +USA/CA-QDX-33/2020|MT614459.1|20-03-15 node_674:C6312A,C13730T,C23929T,C28311T USA/CA-QDX-33/2020|MT614459.1|20-03-15:C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 node_674:C6312A,C13730T,C23929T,C28311T USA/DC-HP00063/2020|MT646075.1|20-03-13:C11455T +England/PHEC-1A601/2020|20-03-04 node_699:G1397A,T28688C,G29742T 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node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_434:A26332G,A28877T,G28878C England/BRIS-12AF02/2020|20-05-01:G27670T +USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_442:C3411T,A12519G,C21757T,G23593C,A23756T,G29751T node_443:G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08:C22264T +USA/MA-MGH-03951/2021|MW617773.1|21-01-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_442:C3411T,A12519G,C21757T,G23593C,A23756T,G29751T node_443:G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C USA/MA-MGH-03951/2021|MW617773.1|21-01-22:T27824C +USA/MD-MDH-0841/2021|MW621433.1|21-01-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_476:G25088T node_477:A6319G,T26149C node_478:T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +England/CAMB-72B44/2020|20-03-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C +England/CAMB-822D3/2020|20-04-12 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C +Switzerland/300433/2020|LR898634.1|20-09-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_507:G2995T,T4871C,C6449T,C10252T,C19366T,T27808C Switzerland/300433/2020|LR898634.1|20-09-29:G27382T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_509:G24794T +EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_514:C2706T,G9968T,G16647T,T23480G +EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_514:C2706T,G9968T,G16647T,T23480G +Japan/TKYE627000_2020/2020|LC593811.1|20-08 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_521:C313T node_525:C9286T node_527:T4346C,C10376T,C14708T,C28725T,G29692T Japan/TKYE627000_2020/2020|LC593811.1|20-08:C7728T +IND/GBRC455a/2020|MW600436.1|20-12-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_521:C313T node_532:C5700A node_533:T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T IND/GBRC455a/2020|MW600436.1|20-12-24:G160T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08:C28969T +England/CAMC-947392/2020|20-07-18 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_571:T29464C node_572:G26918T node_573:C7843T,G15438T,C25207T,C28453T England/CAMC-947392/2020|20-07-18:T25949C +AUS/VIC11646/2020|MW155572.1|20-07-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_621:A1163T node_623:T7540C,G16647T,G22992A,G23401A node_624:C18555T,C22987T AUS/VIC11646/2020|MW155572.1|20-07-22:G6617T +England/CAMC-A65DDB/2020|20-10-11 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_225:G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T England/CAMC-A65DDB/2020|20-10-11:T22918G +England/QEUH-9F3FDD/2020|20-09-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_226:T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +England/QEUH-96A85E/2020|20-08-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_227:C7528T,C29555T England/QEUH-96A85E/2020|20-08-14:T23986C +HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_228:G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06:C14724T +HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_228:G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06:A6391G +England/PHEC-149F0D/2020|20-11-19 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_229:C2836T,G21724T node_230:C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +England/MILK-A230C1/2020|20-10-03 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T England/MILK-A230C1/2020|20-10-03:A2175G +England/QEUH-A76C07/2020|20-10-12 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T node_373:C15480T England/QEUH-A76C07/2020|20-10-12:G21777A +England/MILK-AC7997/2020|20-10-21 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T node_373:C15480T England/MILK-AC7997/2020|20-10-21:C125T +Scotland/QEUH-9B75D3/2020|20-09-04 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T node_374:G8179T Scotland/QEUH-9B75D3/2020|20-09-04:G29778T +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_545:C25916T,C29769T USA/MA_MGH_00693/2020|MT520290.1|20-04-06:T28360C +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_546:A2475G CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13:C14805T +England/MILK-97356A/2020|20-08-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T England/MILK-97356A/2020|20-08-14:C15720T +England/ALDP-A2FCA3/2020|20-10-05 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_326:C20451T,G21770A node_327:T7919G England/ALDP-A2FCA3/2020|20-10-05:C24734T +England/MILK-A474DA/2020|20-10-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/MILK-A474DA/2020|20-10-06:A6659G +England/QEUH-AA0035/2020|20-10-20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_332:T8110C England/QEUH-AA0035/2020|20-10-20:G11417T
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_path_clades.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,623 @@ +clade root_id from_tree_root +19A node_1 +B node_1 +B.26 node_4 > C7423T +B.48 node_5 > C20270T +B.15 node_8 > T4949C +B.5 node_9 > C29635T +B.54 node_10 > C14805T,G26144T +B.47 node_24 > A10982G +B.20 node_660 > A14940G +B.52 node_661 > A1904G,C8090T,C10789T +B.11 node_662 > T514C +B.46 node_663 > A12557G,C24904T,A27359G +B.1.14 node_664 > C25692T +B.27 node_665 > G29032A +B.19 node_666 > C10277T +B.6 node_674 > C6312A,C13730T,C23929T,C28311T +19B node_676 > C8782T,T28144C +A node_676 > C8782T,T28144C +B.10 node_698 > C6696T +B.4 node_699 > G1397A,T28688C,G29742T +B.23 node_6 > C20270T > A29683T +B.33 node_11 > C14805T,G26144T > T17247C +B.28 node_18 > C14805T,G26144T > G28842T +B.29 node_19 > C14805T,G26144T > C23707T +B.40 node_20 > C14805T,G26144T > A2480G,C2558T +B.30 node_21 > C14805T,G26144T > A4236G,T25655C +B.41 node_22 > C14805T,G26144T > G5572T +B.31 node_23 > C14805T,G26144T > G13627T,C15540T,A28338G +B.1 node_26 > C241T > C14408T +B.3 node_658 > C241T > T241C,G1440A,G2891A +B.18 node_668 > G29711T > C1218T,G27806T +B.13 node_669 > G29711T > A4838G,C7420T,C14937T,C20148T +B.51 node_670 > G29711T > T2116A +B.45 node_672 > C28854T > C12710T +B.12 node_673 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C +B.6.6 node_675 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T +A.1 node_681 > C8782T,T28144C > A17858G,C18060T +A.2 node_682 > C8782T,T28144C > T9477A,C14805T,G25979T +A.3 node_697 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C +B.4.4 node_700 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C +B.4.5 node_701 > G1397A,T28688C,G29742T > C1076T +B.37 node_13 > C14805T,G26144T > T17247C > C8078T +B.35 node_14 > C14805T,G26144T > T17247C > A7479G,C25572T +B.32 node_15 > C14805T,G26144T > T17247C > A1587G +B.34 node_16 > C14805T,G26144T > T17247C > C988T +B.39 node_17 > C14805T,G26144T > T17247C > A1515G,C9223T +B.3.1 node_659 > C241T > T241C,G1440A,G2891A > G28851T +A.5 node_678 > C8782T,T28144C > A23403G,C26088T > G23403A +A.10 node_680 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G +A.28 node_695 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T +A.12 node_696 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T +20A node_28 > C241T > C14408T > A23403G > C3037T +B.1.108 node_28 > C241T > C14408T > A23403G > C3037T +A.23.1 node_691 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C +A.4 node_692 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T +A.11 node_693 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T +A.21 node_694 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T +B.1.105 node_45 > C241T > C14408T > A23403G > C3037T > G28514T +B.1.152 node_46 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C +B.1.103 node_47 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T +B.1.188 node_48 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T +B.1.378 node_49 > C241T > C14408T > A23403G > C3037T > G3871T +B.1.199 node_50 > C241T > C14408T > A23403G > C3037T > C2939T +B.1.139 node_51 > C241T > C14408T > A23403G > C3037T > A696C +B.1.91 node_52 > C241T > C14408T > A23403G > C3037T > G24077T +B.1.350 node_53 > C241T > C14408T > A23403G > C3037T > G25563T +B.1.216 node_267 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G +B.1.221 node_268 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.525 node_272 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T +B.1.222 node_273 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A +B.1.379 node_274 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T +B.1.182 node_275 > C241T > C14408T > A23403G > C3037T > A20268G +B.1.5 node_341 > C241T > C14408T > A23403G > C3037T > C15324T +B.1.215 node_359 > C241T > C14408T > A23403G > C3037T > G3831A +B.1.177.24 node_360 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T +B.1.8 node_394 > C241T > C14408T > A23403G > C3037T > A24862G +B.1.179 node_395 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T +B.1.81 node_396 > C241T > C14408T > A23403G > C3037T > C1909T +B.1.201 node_397 > C241T > C14408T > A23403G > C3037T > C2940T +B.1.395 node_398 > C241T > C14408T > A23403G > C3037T > C6990T +B.1.384 node_400 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T +B.1.67 node_401 > C241T > C14408T > A23403G > C3037T > T26512C +B.1.98 node_402 > C241T > C14408T > A23403G > C3037T > C25350T +B.1.76 node_403 > C241T > C14408T > A23403G > C3037T > T17835C +B.1.383 node_404 > C241T > C14408T > A23403G > C3037T > A25575C +B.1.142 node_405 > C241T > C14408T > A23403G > C3037T > C14741T +B.1.131 node_406 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T +B.1.376 node_407 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T +B.1.23 node_408 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T +B.1.153 node_412 > C241T > C14408T > A23403G > C3037T > G14580T +B.1.113 node_413 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T +B.1.70 node_414 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C +B.1.145 node_415 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A +B.1.197 node_416 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C +B.1.143 node_417 > C241T > C14408T > A23403G > C3037T > C4084T +B.1.187 node_418 > C241T > C14408T > A23403G > C3037T > A544G,C17104T +B.1.414 node_419 > C241T > C14408T > A23403G > C3037T > G20275A +B.1.93 node_420 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T +B.1.206 node_421 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T +B.1.390 node_422 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T +B.1.69 node_423 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T +B.1.77 node_424 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A +B.1.78 node_425 > C241T > C14408T > A23403G > C3037T > G29422T +20B node_426 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C +B.1.195 node_653 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +B.1.1.291 node_654 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T +B.1.134 node_657 > C241T > C14408T > A23403G > C3037T > G20980A +A.2.4 node_688 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T +B.1.391 node_32 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T +B.1.104 node_33 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T +B.1.88 node_34 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T +B.1.79 node_38 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T +B.1.248 node_39 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G +B.1.251 node_40 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T +B.1.250 node_41 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T +B.1.392 node_42 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G +B.1.252 node_43 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T +B.1.249 node_44 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T +B.1.110 node_54 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T +20C node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.371 node_61 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T +B.1.440 node_211 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T +B.1.221.1 node_269 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 node_271 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +B.1.415 node_276 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C +B.1.223 node_304 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T +B.1.404 node_305 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T +B.1.181 node_307 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G +B.1.416 node_308 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T +B.1.225 node_311 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T +B.1.180 node_312 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C +B.1.189 node_313 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T +B.1.157 node_314 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C +B.1.418 node_315 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T +B.1.151 node_342 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T +B.1.220 node_343 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C +B.1.210 node_344 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T +B.1.178 node_345 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A +B.1.147 node_346 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T +B.1.213 node_347 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T +B.1.209 node_348 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G +B.1.149 node_349 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +B.1.6 node_350 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T +B.1.214 node_351 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T +B.1.208 node_352 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T +B.1.218 node_353 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +B.1.96 node_355 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T +B.1.128 node_356 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C +B.1.205 node_357 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G +B.1.97 node_358 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G +20E.EU1 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.177.14 node_361 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G +B.1.35 node_399 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T +B.1.207 node_410 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T +B.1.198 node_411 > C241T > C14408T > A23403G > C3037T > A187G > C19066A +B.1.1.119 node_427 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A +B.1.1.77 node_655 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C +A.2.3 node_686 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A +A.2.2 node_687 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T +B.1.254 node_35 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C +B.1.88.1 node_37 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T +B.1.110.2 node_60 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T +B.1.446 node_64 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A +B.1.437 node_65 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A +B.1.485 node_66 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C +B.1.22 node_67 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T +B.1.349 node_68 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T +B.1.453 node_69 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T +B.1.362 node_78 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T +B.1.489 node_79 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T +B.1.302 node_80 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G +B.1.431 node_81 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T +B.1.314 node_82 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T +B.1.333 node_83 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T +B.1.448 node_84 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A +B.1.310 node_85 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T +B.1.509 node_105 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T +B.1.346 node_106 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12820G,C16762T,A17637G,C20762T,C28887T +B.1.320 node_107 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A +B.1.521 node_108 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T +B.1.294 node_121 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A19899T,A21464G +B.1.306 node_122 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25777T,C29614T +B.1.39 node_123 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8788C,G26951A +B.1.324 node_124 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7528T +B.1.328 node_125 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C775T,C27923T,G28975T +B.1.341 node_126 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A12557C +B.1.332 node_127 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1917T +B.1.325 node_128 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C23191T +B.1.293 node_129 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G15906T +B.1.311 node_141 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28893T +B.1.323 node_142 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T9070C +B.1.268 node_146 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3892T +B.1.318 node_147 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2536T,C10376T,C14931T,C24082T,C27005T,A28880G +B.1.369 node_148 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16260T,C28821A +B.1.287 node_149 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C20555T,C21772T +B.1.38 node_150 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G25523T,T27869C +B.1.515 node_151 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20049C,C21627A,C23655T +B.1.348 node_152 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,C17069T,C26801T +B.1.413 node_153 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C26625T +B.1.360 node_154 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27847T +B.1.366 node_155 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T8041C,G22225T +B.1.363 node_156 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C335T,T16425G +B.1.305 node_157 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T +B.1.117 node_158 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T +B.1.304 node_160 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5310T,C12294T,C25511T +B.1.264 node_161 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11919T +B.1.330 node_162 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1463A,G7557A,C8818T +B.1.313 node_163 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5183T +B.1.331 node_164 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25976A +B.1.165 node_165 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C7851T,C20233T +B.1.338 node_166 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25572T +B.1.452 node_167 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C16762T +B.1.321 node_168 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G29291A +B.1.283 node_169 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A27821G +B.1.340 node_170 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G2286A,A4197G,G7954T,A10552G,A28715T +B.1.444 node_171 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T +B.1.166 node_172 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1887T +B.1.120 node_173 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C829T,G28371T +B.1.319 node_174 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10851T +B.1.167 node_175 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C5312T,G27852T +B.1.267 node_176 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A8252G +B.1.487 node_177 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1734T,C23664T +B.1.355 node_178 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1495T,T7332C,T7831A,G28845T +B.1.516 node_179 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28609T,G28621A,G28899T,C29171T,G29395A,G29628T +B.1.337 node_180 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C475T,C5986T,A28389T +B.1.513 node_181 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G20709T +B.1.517 node_182 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G3231T,A12850G,C21364T,A23064C,C28890T +B.1.168 node_183 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18213T,A18818G +B.1.312 node_184 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C9286T,G28899C +B.1.512 node_185 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25731T,C29625T +B.1.329 node_186 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C6406T,G18972A +B.1.315 node_187 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A24129G +B.1.335 node_188 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C66T,A538G,T9107C +B.1.492 node_189 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T4888A,G28727T +B.1.115 node_190 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G7295T +B.1.276 node_192 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G26233T,C27881T +B.1.483 node_199 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T15366C +B.1.37 node_200 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C10712T +B.1.280 node_201 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C16616T,C26885T,C27603T,C28887T +B.1.13 node_202 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C14786T,G20578T +B.1.274 node_203 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > A716G +B.1.479 node_204 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G10631T +B.1.277 node_205 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C19884T +B.1.480 node_206 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C875T,A10904G,G25249T,C28854T +B.1.474 node_207 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T +B.1.273 node_208 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > C6401T,C13458T,C20946T +B.1.158 node_209 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G +B.1.481 node_210 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > T17838C,G26450T +B.1.442 node_249 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G28086T +B.1.441 node_250 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T8296C,C12076T,G28690T,C28854T +B.1.112 node_251 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A6512C +B.1.163 node_252 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > G10793T +B.1.124 node_253 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A2161G,C16376T +B.1.439 node_254 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > T1918C,C6402T,C8320T,C12171T +B.1.111 node_255 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C10507T +B.1.162 node_256 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C9195T,T15354C +B.1.385 node_257 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C1288T,G1298A,G25445T,G28851T,G29254T +B.1.438 node_258 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1154G,G29474T +B.1.245 node_259 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A1096G,G14874T +B.1.436 node_265 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A25524G,C26801T,G29449T +B.1.443 node_266 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > A11246T,A23949G,C29013T +B.1.232 node_278 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G27987T +B.1.243 node_279 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T24076C +B.1.240 node_280 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C18486T,T22162C +B.1.239 node_281 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G16741A +B.1.402 node_282 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4633T,T14643C,C22482T +B.1.397 node_283 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G1135T +B.1.229 node_284 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G7798T +B.1.400 node_285 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A +B.1.235 node_287 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > T5507A +B.1.403 node_288 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C4596A,G19086T +B.1.238 node_289 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C8683T +B.1.241 node_290 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C11575T +B.1.231 node_291 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1714T +B.1.399 node_292 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C28887T +B.1.236 node_296 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G11842A,A12759G,G18292T +B.1.447 node_297 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A8884G,C16694A,C26177T +B.1.406 node_298 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G25049T +B.1.408 node_299 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C29200T,C29451T +B.1.409 node_300 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T +B.1.396 node_301 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C1191T,C9521A,G29422T,A29567G +B.1.234 node_302 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G2258A,A6441G,C8140T,A9204G,C29445T +B.1.407 node_303 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T +B.1.419 node_306 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T > G21778A,T28854C +B.1.190 node_340 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > G12550A,C20740A +B.1.177.11 node_365 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.177 node_366 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T +B.1.177.23 node_381 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.177.16 node_385 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C28310A +B.1.177.15 node_393 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.1.4 node_429 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C +B.1.1.131 node_447 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18115T +B.1.1.257 node_448 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C27046T +B.1.1.125 node_449 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T27264G +B.1.1.203 node_450 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1800A,C23854T,G25972A,G27842T +B.1.1.71 node_451 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T11638C +B.1.1.157 node_452 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17678T +B.1.1.63 node_453 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21597T,C29144T +B.1.1.250 node_454 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T +B.1.1.189 node_455 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9430T +B.1.1.201 node_456 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T +B.1.1.238 node_457 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T +B.1.1.196 node_458 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T +B.1.1.172 node_459 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4711C,A6709G +B.1.1.205 node_460 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5539A,G21468A +B.1.1.304 node_461 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C936T,G3259T +B.1.1.192 node_462 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C673T +B.1.1.39 node_463 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G9130T,T27319C,G28487A,C28868T +B.1.1.174 node_464 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G443A,G28378T +B.1.1.194 node_465 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T +B.1.1.138 node_467 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T +B.1.1.38 node_468 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9438T,G29777T +B.1.1.155 node_469 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G922T,C6541T,C19983T +B.1.1.145 node_470 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3170T,C6336T,C27673T +B.1.1.128 node_471 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6781T,C11916T,C19185T +B.1.1.153 node_472 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1912T,T9151C,C9693T,C13887T,T16456C,C23248T +B.1.1.160 node_473 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C10376T,C26208T +B.1.1.261 node_474 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C26447T +B.1.1.165 node_475 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A27932G,G29705T +B.1.1.28 node_476 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T +B.1.1.277 node_483 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T +B.1.1.241 node_484 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C +B.1.1.255 node_485 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T +B.1.1.254 node_486 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T +B.1.1.105 node_487 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T +B.1.1.274 node_489 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T +B.1.1.180 node_490 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C +B.1.1.286 node_491 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A +B.1.1.55 node_492 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C +B.1.1.95 node_493 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T +B.1.1.186 node_494 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T +B.1.1.275 node_495 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A +B.1.1.253 node_496 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C +B.1.1.83 node_497 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T +B.1.1.1 node_499 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T +B.1.1.298 node_510 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T +B.1.1.270 node_511 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T +B.1.1.247 node_512 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T +B.1.1.171 node_519 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1437T,G29745T +B.1.1.170 node_520 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2062T,C5184A,C13887T,C18687T,C23248T +B.1.1.114 node_521 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T +B.1.1.314 node_542 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C +B.1.1.98 node_551 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T +B.1.1.43 node_552 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T +B.1.150 node_553 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C17249T,G17722T +B.1.1.187 node_554 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G +B.1.1.164 node_555 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A +B.1.1.200 node_556 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T +B.1.1.137 node_557 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T +B.1.1.227 node_558 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.133 node_559 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G +B.1.1.302 node_561 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G +B.1.1.297 node_562 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C +B.1.1.198 node_563 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.1.97 node_564 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G +B.1.1.256 node_565 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T +B.1.1.237 node_566 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T +B.1.1.86 node_570 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C +B.1.1.115 node_571 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C +B.1.1.234 node_574 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G +B.1.173 node_578 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A +B.1.1.134 node_579 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T +B.1.1.287 node_580 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A +B.1.1.231 node_581 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C +B.1.1.37 node_582 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G +B.1.1.151 node_583 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T +B.1.1.59 node_588 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T +B.1.1.16 node_593 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T +B.1.1.148 node_594 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T +B.1.1.12 node_595 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C +B.1.1.229 node_596 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T +B.1.1.307 node_597 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T +B.1.1.168 node_598 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A +B.1.1.147 node_604 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G +B.1.1.225 node_605 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T +B.1.1.239 node_606 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T +B.1.1.313 node_607 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T +B.1.1.92 node_608 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C +B.1.1.26 node_609 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A +B.1.1.89 node_612 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T +B.1.1.116 node_613 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G +B.1.1.236 node_614 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T,C2445T,C9430T,T15156C,C20368T,C26527T,C29149T,G29239A +B.1.1.67 node_615 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T +B.1.1.10 node_616 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A +20I/501Y.V1 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 node_618 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.25 node_621 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T +B.1.1.217 node_625 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T +B.1.1.96 node_628 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C +B.1.1.20 node_629 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T +B.1.1.178 node_630 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T +B.1.1.315 node_631 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.1.280 node_632 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T1543A,T4369C,T22020C,C27911T +B.1.1.56 node_633 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T15978C,G24794T +B.1.1.182 node_634 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C8917T +B.1.1.193 node_635 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27996T +B.1.1.120 node_636 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C527T,C1962T,C7735T,T23255C,A28065C +B.1.1.132 node_637 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21255C,G28960T +B.1.1.32 node_638 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A +B.1.1.266 node_639 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5554T,G19891T,C22938A,C24034T,G25249T,G26152T,C27532T,G28321T,C29614T +B.1.1.228 node_640 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20288G,C21721T,C26894T,C28638A +B.1.1.72 node_641 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3615C,G22256T,C23802T,A27403T,C27741T +B.1.1.58 node_642 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20233T,C22210T +B.1.1.136 node_643 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A23063T +B.1.1.169 node_644 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G596T,T18231C +B.1.1.109 node_645 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T10513C,T27851C,C29541T,C29739T +B.1.1.154 node_646 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C16101T +B.1.1.44 node_647 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21302T,C21304A,G21305A,G28884T +B.1.1.111 node_648 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5950T,C19164T,A21137G,T27447C,T29661C +B.1.1.318 node_649 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C +B.1.1.263 node_650 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G +B.1.1.185 node_651 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C7095T,A16179G +B.1.1.13 node_652 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4207T,A4208C,G11842T +B.1.1.224 node_656 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.110.1 node_59 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G1319A > G2945A,C10156T +B.1.44 node_71 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > C10376T,G18583T,G29773T +B.1.491 node_72 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T > A3103C,C5893T,A28117T +B.1.361 node_74 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > T15276A,G28842T +20H/501Y.V2 node_75 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T +B.1.309 node_87 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1990T,C2939T,A5264G,C16457T +B.1.359 node_88 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28376T +B.1.493 node_89 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G26020T +B.1.496 node_90 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T +B.1.3 node_101 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C715T,A23586G +B.1.494 node_102 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C13252T +B.1.497 node_103 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C16650T,A20675T,G29179T,G29779T +B.1.495 node_104 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > G28027T,G29742T +20G node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.2 node_109 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T +B.1.265 node_114 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T +B.1.336 node_115 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T +B.1.450 node_117 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G17808T +B.1.370 node_118 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C24378T +B.1.435 node_119 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C4878T,A22525G,C29272T,G29449T +B.1.423 node_120 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T +B.1.40 node_131 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T +B.1.367 node_132 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T +B.1.411 node_134 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T +B.1.375 node_139 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > T1171C,A5747G,C10789T,G17259T,G24007A +B.1.433 node_140 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > C6843T,T11764C,G29402T +B.1.12 node_144 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > C4320T +B.1.356 node_145 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C25688T > T13006C +B.1.519 node_159 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C1968T,G29705T > G28808T,G29434C +B.1.281 node_194 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C2937T +B.1.389 node_198 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A +B.1.457 node_213 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C882T,C6990T +B.1.523 node_217 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +B.1.454 node_218 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G28851T +B.1.467 node_219 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G5206T,C26885T,G28875T +B.1.468 node_220 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T +B.1.460 node_222 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T181C,C8664T,C12525T,C15120T,G28975T +B.1.36 node_223 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T +B.1.160 node_238 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +B.1.470 node_243 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T +B.1.469 node_244 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T +B.1.462 node_248 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C3811T,A6608G,A28911T +B.1.9.5 node_261 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T2113C,G9190T,G28851C +B.1.9.1 node_262 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T24923C +B.1.9.2 node_263 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > T5941C,A22438T +B.1.9.4 node_264 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C2113T,C7765T,C17690T > C346T,A28959G +B.1.421 node_286 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G19969A > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T +B.1.401 node_294 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C +B.1.405 node_295 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > G23522A +B.1.416.1 node_310 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T > C25731T,G28703C > C2706T,C28703G +B.1.256 node_339 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > C3411T,C3885T +B.1.177.26 node_375 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.25 node_380 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.177.17 node_383 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > C22088T,C29686T +B.1.177.13 node_384 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > A408G > G27877T +B.1.177.19 node_387 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > T29185A +B.1.177.20 node_388 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > C10626T +B.1.177.18 node_389 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G23311C > G25440T,C27752T +B.1.177.10 node_391 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G28321A +B.1.177.9 node_392 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > G22346T > G21800T,A22053C +B.1.1.74 node_430 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G3242A,G8120C,C21646T,A24205T,G28083T +B.1.1.158 node_431 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G242T,C18086T +B.1.1.3 node_435 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G10262A,C22995T,A27669G +B.1.1.290 node_436 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28256T,C29784T +R.1 node_437 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T +B.1.1.5 node_439 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A11839G +B.1.1.222 node_440 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > A23756G +B.1.1.184 node_441 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C28905T +B.1.1.85 node_442 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T +B.1.1.232 node_445 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > T2537G,G12191T,T16479C +B.1.1.8 node_446 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6573T > C25528T +B.1.1.240 node_466 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G24781T,G29706T > A20742C,C28087T,C28310T,A29521T,G29645T,T29706G +B.1.1.251 node_482 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C24904T,T25088G +B.1.1.54 node_488 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T > C1471T +B.1.1.81 node_498 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T > C19366T +20D node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +C.6 node_500 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T +B.1.1.292 node_513 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C +B.1.1.303 node_528 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.305 node_529 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G28396A +B.1.1.215 node_530 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G1820A,C6541T +B.1.1.113 node_531 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > A11348G +B.1.1.281 node_532 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A +B.1.1.285 node_534 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C823T +B.1.1.213 node_535 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C27128T +B.1.1.214 node_536 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C8917T,C18167T,G21518T,G28975T +B.1.1.272 node_537 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T +B.1.1.49 node_538 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G22627A,G28628T +B.1.1.283 node_539 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G25563C,G28178T +B.1.1.181 node_540 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C2509T,C14724T,G24262T,G27703T +B.1.1.139 node_541 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > T27645A,G27666A +B.1.1.33 node_543 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C +B.1.1.61 node_549 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > G18898T +B.1.1.249 node_550 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18907T > C22314T,T24796C +B.1.1.204 node_560 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G > T3873C,G3880A +B.1.1.264 node_567 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > T5465C,G24102A +B.1.1.279 node_568 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G18859T +B.1.1.149 node_569 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T > G1874T,C8683T,C28093T +B.1.1.235 node_572 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T +B.1.1.207 node_576 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > T9172C,G26730T +B.1.1.41 node_577 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10948G > C6312A +B.1.1.308 node_584 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G1590T,A11120G +B.1.1.311 node_585 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > G11230T,G11401T,T24088C +B.1.1.309 node_586 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > C835T +B.1.1.310 node_587 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G +B.1.1.260 node_590 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G11230T,G23587C +B.1.1.199 node_591 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > T7792C +B.1.1.259 node_592 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21724T > G17302T,C25046T +B.1.1.300 node_600 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > T13794G +B.1.1.70 node_601 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A15972G,C19718T,T28759C +B.1.1.299 node_602 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A23207G +B.1.1.301 node_603 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10265A > A19650G +B.1.1.233 node_610 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > C6445T,G16852T +B.1.1.65 node_611 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A > A5538T,T25783C +L.2 node_617 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A > C26313T +D.3 node_622 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > C7600T,G7798T,T23548C +20F node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +D.2 node_623 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T > T7540C,G16647T,G22992A,G23401A +B.1.1.219 node_626 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > G5572A,A6366T,G11410A,G25776T +B.1.1.218 node_627 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C +B.1.110.3 node_57 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > G27915A > C601T > G12832T +B.1.351 node_76 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A10323G > G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T > A22206G +B.1.507 node_92 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A20553G +B.1.503 node_93 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G25947C +B.1.499 node_94 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C28863T +B.1.508 node_95 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C19145T +B.1.502 node_96 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > T13914C +B.1.501 node_97 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C10458T,G26828T +B.1.500 node_98 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > A9984C,G25445T +B.1.505 node_99 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T +B.1.504 node_100 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C11916T > C18998T,G29540A > G26217T +B.1.426 node_112 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > A22320G +B.1.425 node_113 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > T833C > G9705T +B.1.514 node_116 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C9967T > G10902A +B.1.427 node_136 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > G9738C,G13713A,C16394T +B.1.94 node_137 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T +B.1.282 node_196 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C882T,C17746T,G19962T,G28907T +B.1.477 node_197 > C241T > C14408T > A23403G > C3037T > G25563T > C2416T > G8371T > C22477T > C3811T,G22225A +B.1.466 node_215 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > C21614T +B.1.465 node_216 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > G24197T > T241C,A8821G,C15752T,T26066C +B.1.36.20 node_221 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T > C593T,T3118C,T10200C,A12547G,C21772T,C28854T +B.1.36.23 node_232 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.16 node_233 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T +B.1.36.9 node_234 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A +B.1.36.24 node_235 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.12 node_236 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T +B.1.36.10 node_237 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T +B.1.471 node_246 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T +B.1.472 node_247 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T +B.1.258 node_319 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A +B.1.177.21 node_368 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A +B.1.177.22 node_369 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T +B.1.177.2 node_377 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G +B.1.177.3 node_378 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T +B.1.177.4 node_379 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T +B.1.1.289 node_433 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A +B.1.1.2 node_434 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C +B.1.316 node_438 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C +R.2 node_443 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C +20J/501Y.V3 node_478 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C +P.2 node_480 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T +B.1.1.143 node_481 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T +C.3 node_502 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T +C.14 node_503 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T +C.13 node_504 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G +C.1 node_505 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T +C.16 node_506 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 node_507 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +C.2 node_508 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T +C.4 node_509 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T +B.1.1.294 node_515 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C +B.1.1.293 node_518 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T +B.1.1.50 node_523 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T +B.1.1.209 node_524 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A +B.1.1.47 node_526 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T +B.1.1.284 node_527 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T +B.1.1.179 node_533 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T +B.1.146 node_573 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T +B.1.429 node_138 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T +B.1.36.1 node_225 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +B.1.36.28 node_226 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C +B.1.36.17 node_227 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T +B.1.36.27 node_228 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.21 node_230 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 node_231 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +20A.EU2 node_240 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.258.14 node_334 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T +B.1.258.2 node_336 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 node_338 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T +B.1.177.6 node_370 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T +B.1.177.12 node_371 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T +B.1.177.5 node_372 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T +B.1.177.7 node_373 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T +B.1.177.8 node_374 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T +N.1 node_545 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T +N.4 node_546 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G +N.3 node_547 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T +B.1.258.16 node_321 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T +G.1 node_337 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +M.1 node_517 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.160.7 node_242 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.258.6 node_324 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 node_325 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.258.10 node_327 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G +B.1.258.12 node_328 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A +B.1.258.17 node_333 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.258.4 node_331 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 node_332 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_path_mutations.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,437 @@ +England/BRIS-1853249/2020|20-04-02 node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 node_2:C24034T +Wales/PHWC-25B04/2020|20-03-24 node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G +Wales/LIVE-A6831/2020|20-03-16 node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C +Scotland/EDB1317/2020|20-04-09 node_4:C7423T Scotland/EDB1317/2020|20-04-09:G4207A,T7423C +Scotland/EDB354/2020|20-03-30 node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C +England/SHEF-BFF8B/2020|20-03-25 node_5:C20270T England/SHEF-BFF8B/2020|20-03-25:C1473T +England/SHEF-BFFC7/2020|20-03-25 node_8:T4949C England/SHEF-BFFC7/2020|20-03-25:G28027T +England/PHEC-1E01E/2020|20-04-03 node_8:T4949C England/PHEC-1E01E/2020|20-04-03:C22445T +DP0476/2020|LC571003.1|20-02-16 node_9:C29635T DP0476/2020|LC571003.1|20-02-16:C29592T +DP0191/2020|LC570980.1|20-02-15 node_9:C29635T DP0191/2020|LC570980.1|20-02-15:A3854G +England/LIVE-A5D06/2020|20-03-17 node_24:A10982G England/LIVE-A5D06/2020|20-03-17:C6681T,G11801A +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 node_660:A14940G USA/CA-CZB-1091/2020|MT460091.1|20-05-01:C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 node_660:A14940G USA/CA-CZB-11876/2020|MW276506.1|20-04-08:A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 node_662:T514C USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24:C22033A +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 node_664:C25692T USA/CA-CZB-1015/2020|MT438733.1|20-04-22:T15867A +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 node_664:C25692T USA/CA-CZB-1073/2020|MT449664.1|20-04-21:G10617A,G22225T +England/SHEF-BFEBB/2020|20-03-24 node_665:G29032A England/SHEF-BFEBB/2020|20-03-24:C11747T,T24364G +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 node_666:C10277T USA/CA-CZB-1051/2020|MT449644.1|20-04-06:G7273A +HKG/HKU-904a/2020|MT365032.1|20-01-30 node_676:C8782T,T28144C HKG/HKU-904a/2020|MT365032.1|20-01-30:C4158T,C18828T +England/LIVE-9E66F/2020|20-04-10 node_698:C6696T England/LIVE-9E66F/2020|20-04-10:C7765T,G10256T +Scotland/CVR705/2020|20-03-26 node_698:C6696T Scotland/CVR705/2020|20-03-26:C11001T,G17122T +Scotland/EDB046/2020|20-03-15 node_10:C14805T,G26144T node_11:T17247C Scotland/EDB046/2020|20-03-15:C9996T,T26144G +Scotland/EDB199/2020|20-03-26 node_10:C14805T,G26144T node_18:G28842T Scotland/EDB199/2020|20-03-26:C22713T,G26031T +England/ALDP-9EE3AC/2020|20-05-06 node_10:C14805T,G26144T node_19:C23707T England/ALDP-9EE3AC/2020|20-05-06:G20991T +England/CAMB-8042A/2020|20-04-10 node_10:C14805T,G26144T node_20:A2480G,C2558T England/CAMB-8042A/2020|20-04-10:A4015T +England/CAMB-737B8/2020|20-03-30 node_10:C14805T,G26144T node_20:A2480G,C2558T England/CAMB-737B8/2020|20-03-30:G3971T,G28380T +USA/WA-S885/2020|MT642386.1|20-04-22 node_10:C14805T,G26144T node_21:A4236G,T25655C USA/WA-S885/2020|MT642386.1|20-04-22:G7739T,C25904T +USA/UT-QDX-1870/2020|MW190618.1|20-03-16 node_10:C14805T,G26144T node_21:A4236G,T25655C USA/UT-QDX-1870/2020|MW190618.1|20-03-16:A5269G,C9943T +USA/WA3-UW1/2020|MT163716.1|20-02-27 node_10:C14805T,G26144T node_22:G5572T USA/WA3-UW1/2020|MT163716.1|20-02-27:T2446C,C3411T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 node_10:C14805T,G26144T node_22:G5572T SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29:C28311T +England/LIVE-9D7D6/2020|20-04-15 node_667:G29711T node_668:C1218T,G27806T England/LIVE-9D7D6/2020|20-04-15:C27493T +USA/WI-UW-325/2020|MT706432.1|20-04-24 node_667:G29711T node_670:T2116A USA/WI-UW-325/2020|MT706432.1|20-04-24:C12880T,C28854T +Scotland/CVR780/2020|20-03-27 node_671:C28854T node_672:C12710T Scotland/CVR780/2020|20-03-27:C5997T +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 node_676:C8782T,T28144C node_681:A17858G,C18060T USA/MN-MDH-1475/2020|MT920008.1|20-03-23:A7966G,A22422G +England/SHEF-BFF21/2020|20-03-25 node_5:C20270T node_6:A29683T node_7:A18671G +Switzerland/100159/2020|LR884273.1|20-03-16 node_10:C14805T,G26144T node_11:T17247C node_12:C12400T Switzerland/100159/2020|LR884273.1|20-03-16:C16995T +England/LOND-126031F/2020|20-03-15 node_10:C14805T,G26144T node_11:T17247C node_12:C12400T England/LOND-126031F/2020|20-03-15:A20511G +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 node_10:C14805T,G26144T node_11:T17247C node_13:C8078T USA/NY-QDX-1999/2020|MW190795.1|20-03-16:G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 node_10:C14805T,G26144T node_11:T17247C node_13:C8078T +England/BRIS-130965/2020|20-04-13 node_10:C14805T,G26144T node_11:T17247C node_14:A7479G,C25572T England/BRIS-130965/2020|20-04-13:C10741T,C27498T +Scotland/CVR44/2020|20-03-13 node_10:C14805T,G26144T node_11:T17247C node_15:A1587G Scotland/CVR44/2020|20-03-13:G443A +Scotland/CVR839/2020|20-03-27 node_10:C14805T,G26144T node_11:T17247C node_15:A1587G Scotland/CVR839/2020|20-03-27:T7816A,C24023T +Scotland/CVR207/2020|20-03-18 node_10:C14805T,G26144T node_11:T17247C node_16:C988T Scotland/CVR207/2020|20-03-18:G12832A +England/NORT-284A9B/2020|20-03-25 node_10:C14805T,G26144T node_11:T17247C node_17:A1515G,C9223T England/NORT-284A9B/2020|20-03-25:G28655A,C28657T +Scotland/CVR10/2020|20-03-10 node_10:C14805T,G26144T node_11:T17247C node_17:A1515G,C9223T Scotland/CVR10/2020|20-03-10:T9223C,A21625G +Spain/H12_46/2020|LR884009.1|20-04-08 node_676:C8782T,T28144C node_677:A23403G,C26088T node_678:G23403A Spain/H12_46/2020|LR884009.1|20-04-08:C7967T,C16694T +Spain/R11/2020|LR884126.1|20-03-06 node_676:C8782T,T28144C node_677:A23403G,C26088T node_680:C3037T,A20268G Spain/R11/2020|LR884126.1|20-03-06:T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 node_676:C8782T,T28144C node_677:A23403G,C26088T node_680:C3037T,A20268G +Scotland/EDB5629/2020|20-03-24 node_676:C8782T,T28144C node_677:A23403G,C26088T node_678:G23403A node_679:G9928T Scotland/EDB5629/2020|20-03-24:G27870T +Scotland/EDB5040/2020|20-04-02 node_676:C8782T,T28144C node_677:A23403G,C26088T node_678:G23403A node_679:G9928T Scotland/EDB5040/2020|20-04-02:C593T +England/BRIS-123965/2020|20-04-07 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_29:G7042T,G8861T England/BRIS-123965/2020|20-04-07:C5806T,C10450T +England/BRIS-125347/2020|20-03-27 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_29:G7042T,G8861T +IND/Isolate_9088/2020|MW555597.1|20-06-30 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_30:C4809T IND/Isolate_9088/2020|MW555597.1|20-06-30:G14245A,G28325A +IND/763/2020|MT577009.1|20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_30:C4809T +England/CAMB-75BD8/2020|20-03-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_45:G28514T England/CAMB-75BD8/2020|20-03-29:C18060T +England/ALDP-944BD9/2020|20-06-07 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_46:G1914A,T16456C England/ALDP-944BD9/2020|20-06-07:G4399T,G27746T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_47:C25665T,G28325T USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29:C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_47:C25665T,G28325T USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29:G16075T +USA/WI-UW-26/2020|MT706147.1|20-03-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_49:G3871T USA/WI-UW-26/2020|MT706147.1|20-03-24:A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_49:G3871T USA/IL-QDX-2568/2020|MW191367.1|20-03-14:C19862T +USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_50:C2939T USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30:T11698C,C18322T 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England/BRIS-125D67/2020|20-03-29:C6347T +England/MILK-8664D7/2020|20-07-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_571:T29464C node_572:G26918T England/MILK-8664D7/2020|20-07-17:C29733T +USA/VA-DCLS-1073/2020|MT981458.1|20-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_575:A10948G node_576:T9172C,G26730T USA/VA-DCLS-1073/2020|MT981458.1|20-06:T27846C,C29171T +USA/VA-DCLS-0120/2020|MT482111.1|20-04 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_575:A10948G node_576:T9172C,G26730T USA/VA-DCLS-0120/2020|MT482111.1|20-04:C10818T,C21998T +Wales/PHWC-162751/2020|20-05-27 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_575:A10948G node_577:C6312A Wales/PHWC-162751/2020|20-05-27:G18538T,A20136G +England/CAMC-A40F67/2020|20-10-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_583:G25617T node_584:G1590T,A11120G England/CAMC-A40F67/2020|20-10-06:A12529G +England/QEUH-9B6EAC/2020|20-09-09 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_583:G25617T node_586:C835T England/QEUH-9B6EAC/2020|20-09-09:A29700G +England/NORT-2A4CAE/2020|20-09-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_583:G25617T node_586:C835T England/NORT-2A4CAE/2020|20-09-17:C27945T +Northern_Ireland/NIRE-FB3A5/2020|20-08-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_583:G25617T node_587:A6900G Northern_Ireland/NIRE-FB3A5/2020|20-08-29:A3801G,C26985T +Northern_Ireland/NIRE-FB369/2020|20-08-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_583:G25617T node_587:A6900G Northern_Ireland/NIRE-FB369/2020|20-08-31:G25456T +England/LEED-2AA4EC/2020|20-04-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_589:G21724T node_590:G11230T,G23587C England/LEED-2AA4EC/2020|20-04-06:C22326T,C27128T +England/LEED-2AA394/2020|20-03-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_589:G21724T node_590:G11230T,G23587C England/LEED-2AA394/2020|20-03-31:C20941T +England/BRIS-1854318/2020|20-04-28 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_589:G21724T node_591:T7792C England/BRIS-1854318/2020|20-04-28:C4780T,G22468T +England/BRIS-12E6FA/2020|20-04-20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_589:G21724T node_591:T7792C England/BRIS-12E6FA/2020|20-04-20:C14676T,C17119T +England/WSFT-25C13CB/2020|20-04-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_589:G21724T node_592:G17302T,C25046T +England/PORT-2F5D9C/2020|20-06-05 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_589:G21724T node_592:G17302T,C25046T England/PORT-2F5D9C/2020|20-06-05:A5277G +England/ALDP-5D52BE/2020|20-06-18 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_599:G10265A node_600:T13794G England/ALDP-5D52BE/2020|20-06-18:T28494C +England/ALDP-6FAF24/2020|20-06-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_599:G10265A node_600:T13794G England/ALDP-6FAF24/2020|20-06-29:C6633T,C19862T +England/ALDP-4A2BFC/2020|20-05-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_599:G10265A node_602:A23207G England/ALDP-4A2BFC/2020|20-05-22:A20826G +England/ALDP-49F5B8/2020|20-05-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_599:G10265A node_603:A19650G England/ALDP-49F5B8/2020|20-05-22:T21368C +USA/WA-S2598/2020|MT831859.1|20-06-18 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_609:G16813A node_610:C6445T,G16852T USA/WA-S2598/2020|MT831859.1|20-06-18:G29254T +USA/WA-S820/2020|MT641503.1|20-04-15 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_609:G16813A node_611:A5538T,T25783C USA/WA-S820/2020|MT641503.1|20-04-15:G17261A +Netherlands/NA_436/2020|LR883367.1|20-04-07 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_616:C19170T,G19509A node_617:C26313T Netherlands/NA_436/2020|LR883367.1|20-04-07:G29628T +Netherlands/Friesland_33/2020|LR883315.1|20-04-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_616:C19170T,G19509A node_617:C26313T Netherlands/Friesland_33/2020|LR883315.1|20-04-14:C4824T +USA/COVID20-0537/2020|MT981422.1|20-06-04 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_54:C8389T node_55:G27915A node_56:C601T node_57:G12832T USA/COVID20-0537/2020|MT981422.1|20-06-04:C29503T +USA/COVID20-1129/2020|MW067826.1|20-07-10 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_54:C8389T node_55:G27915A node_56:C601T node_57:G12832T USA/COVID20-1129/2020|MW067826.1|20-07-10:A28165G +USA/VA-DCLS-1147/2020|MT992749.1|20-04 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_92:A20553G USA/VA-DCLS-1147/2020|MT992749.1|20-04:G22487C +USA/CA-CZB-1275/2020|MT533209.1|20-04-16 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_93:G25947C USA/CA-CZB-1275/2020|MT533209.1|20-04-16:C23685T,G27703T +USA/NY-QDX-2365/2020|MW191144.1|20-03-16 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_94:C28863T +USA/CA-CZB-2139/2020|MT750510.1|20-05-21 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_95:C19145T USA/CA-CZB-2139/2020|MT750510.1|20-05-21:C5540A +USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_96:T13914C USA/FL-BPHL-1988/2020|MW286761.1|20-04-18:G3638A,C16217T +USA/NC-QDX-174/2020|MT786825.1|20-04-27 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_97:C10458T,G26828T USA/NC-QDX-174/2020|MT786825.1|20-04-27:C18693A +ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_100:G26217T ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19:C21731T,G29645T +England/ALDP-94EB75/2020|20-06-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_191:C2416T node_193:G8371T node_195:C22477T node_197:C3811T,G22225A +England/ALDP-6E2806/2020|20-07-01 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_191:C2416T node_193:G8371T node_195:C22477T node_197:C3811T,G22225A England/ALDP-6E2806/2020|20-07-01:T16456G,C27769G +Wales/PHWC-360A7/2020|20-04-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_433:G11801A Wales/PHWC-360A7/2020|20-04-29:T4330C,T24063C +Wales/PHWC-260AA/2020|20-03-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_433:G11801A Wales/PHWC-260AA/2020|20-03-24:T7168C +England/CAMB-72B44/2020|20-03-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C +England/CAMB-822D3/2020|20-04-12 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C +England/ALDP-49EC3C/2020|20-05-20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_502:G2447T,G22199T England/ALDP-49EC3C/2020|20-05-20:G29392T,C29541T +PER/covper024/2020|MW030255.1|20-07-04 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_503:G29179T PER/covper024/2020|MW030255.1|20-07-04:C17436T,G27478T +PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_503:G29179T PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08:A10323G,G27160T +PER/covper040/2020|MW030271.1|20-05-05 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_504:A21131G PER/covper040/2020|MW030271.1|20-05-05:C12854T,G20752T +SRB/NS19622-16-06/2020|MW327528.1|20-06-15 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_509:G24794T +BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08:C28969T +USA/WI-UW-114/2020|MT706234.1|20-03-30 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G USA/WI-UW-114/2020|MT706234.1|20-03-30:A14330G,A27989G +England/MILK-ABBF2B/2020|20-10-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_227:C7528T,C29555T England/MILK-ABBF2B/2020|20-10-22:C10474T,C13536T +England/QEUH-96A85E/2020|20-08-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_227:C7528T,C29555T England/QEUH-96A85E/2020|20-08-14:T23986C +USA/MA_MGH_00693/2020|MT520290.1|20-04-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_545:C25916T,C29769T USA/MA_MGH_00693/2020|MT520290.1|20-04-06:T28360C +CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_546:A2475G CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13:C14805T
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_19_sample_names.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,437 @@ +England/BRIS-1853249/2020|20-04-02 +NPL/61-TW/2020|MT072688.1|20-01-13 +Wales/PHWC-25B04/2020|20-03-24 +Wales/LIVE-A6831/2020|20-03-16 +Scotland/EDB1317/2020|20-04-09 +Scotland/EDB354/2020|20-03-30 +England/SHEF-BFF8B/2020|20-03-25 +England/SHEF-BFFC7/2020|20-03-25 +England/PHEC-1E01E/2020|20-04-03 +DP0476/2020|LC571003.1|20-02-16 +DP0191/2020|LC570980.1|20-02-15 +England/LIVE-A5D06/2020|20-03-17 +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 +USA/CA-CZB-1073/2020|MT449664.1|20-04-21 +England/SHEF-BFEBB/2020|20-03-24 +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 +HKG/HKU-904a/2020|MT365032.1|20-01-30 +England/LIVE-9E66F/2020|20-04-10 +Scotland/CVR705/2020|20-03-26 +Scotland/EDB046/2020|20-03-15 +Scotland/EDB199/2020|20-03-26 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_20_general_stats.txt Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,8 @@ +Total Nodes in Tree: 1935 +Total Samples in Tree: 1234 +Total Condensed Nodes in Tree: 10 +Total Samples in Condensed Nodes: 20 +Total Tree Parsimony: 5362 +Number of Clade Annotations: 2 +Max Tree Depth: 15 +Mean Tree Depth: 8.911670
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_aberrant_stats.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,2 @@ +NodeID Issue +node_241 internal-no-mutations
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_clades_stats.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,623 @@ +clade inclusive_count exclusive_count +19A 1234 84 +19B 31 31 +20A 1119 407 +20A.EU2 4 4 +20B 419 391 +20C 237 230 +20D 19 19 +20E.EU1 52 52 +20F 3 3 +20G 3 3 +20H/501Y.V2 4 4 +20I/501Y.V1 4 4 +20J/501Y.V3 2 2 +A 31 1 +A.1 2 2 +A.10 2 2 +A.11 2 2 +A.12 2 2 +A.2 8 2 +A.2.2 2 2 +A.2.3 2 2 +A.2.4 2 2 +A.21 2 2 +A.23.1 2 2 +A.28 2 2 +A.3 2 2 +A.4 2 2 +A.5 4 4 +B 1234 4 +B.1 1121 2 +B.1.1.1 20 1 +B.1.1.10 4 2 +B.1.1.105 4 2 +B.1.1.109 2 2 +B.1.1.111 2 2 +B.1.1.113 2 2 +B.1.1.114 38 2 +B.1.1.115 5 1 +B.1.1.116 2 2 +B.1.1.119 418 3 +B.1.1.12 2 2 +B.1.1.120 2 2 +B.1.1.125 2 2 +B.1.1.128 2 2 +B.1.1.13 2 2 +B.1.1.131 2 2 +B.1.1.132 2 2 +B.1.1.133 4 2 +B.1.1.134 2 2 +B.1.1.136 2 2 +B.1.1.137 2 2 +B.1.1.138 2 2 +B.1.1.139 2 2 +B.1.1.143 2 2 +B.1.1.145 2 2 +B.1.1.147 2 2 +B.1.1.148 2 2 +B.1.1.149 2 2 +B.1.1.151 10 2 +B.1.1.153 2 2 +B.1.1.154 2 2 +B.1.1.155 2 2 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_haplotype_stats.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,1225 @@ +mutation_set sample_count +61T,241T,913T,1541T,2836T,3037T,4105T,4754T,5730T,11259T,14408T,18877T,21597T,21724T,21841A,22444T,23403G,25000T,25563T,26144A,26735T,26849T,28854T,29358T 1 +61T,241T,913T,1541T,2836T,3037T,9745T,10440T,11259T,14408T,18877T,21724T,22444T,23403G,25000T,25563T,26144A,26735T,26849T,28854T,29358T 1 +66A,241T,782T,1059T,1210T,3037T,4455T,7768T,8773G,11916T,14408T,17304T,18998T,23403G,24805C,25563T,26270T,28045T,29540A 1 +66A,241T,1059T,3037T,4455T,7768T,8773G,11916T,14408T,17304T,18998T,22912G,23403G,24805C,25563T,26270T,29540A 1 +66T,241T,445C,1987G,3037T,5730T,6286T,10870T,11781G,14318T,14408T,21255C,22227T,23403G,23644T,25614T,26801G,27944T,28932T,29645T,29739T 1 +66T,241T,445C,1987G,3037T,6286T,10870T,11781G,14408T,18329T,21255C,22227T,23403G,25614T,26801G,27944T,28932T,29645T 1 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9 4.5 0 +USA/MS-CDC-6546/2020|MW279423.1|20-08-25 1 1 1 0 +USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 1 1 1 0 +node_644 2 4 2 0 +England/ALDP-94A63C/2020|20-06-11 1 5 5 0 +England/ALDP-52A636/2020|20-06-01 1 2 2 0 +node_645 2 11 5.5 0 +England/SHEF-D1CE6/2020|20-04-28 1 4 4 0 +England/SHEF-C0F96/2020|20-04-15 1 4 4 0 +node_646 2 9 4.5 0 +England/QEUH-B10460/2020|20-11-02 1 3 3 0 +Scotland/QEUH-96D5CD/2020|20-08-20 1 4 4 0 +node_647 2 11 5.5 0 +ZW-6983|LR963462.1|20-05-01 1 1 1 0 +ZW-6978|LR963455.1|20-05-01 1 1 1 0 +node_648 2 7 3.5 0 +USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 1 1 1 0 +England/MILK-1169960/2021|21-01-25 1 8 8 0 +node_649 2 20 10 0 +England/ALDP-952A44/2020|20-06-21 1 2 2 0 +England/QEUH-9B4A22/2020|20-09-07 1 5 5 0 +node_650 2 9 4.5 0 +Netherlands/NA_359/2020|LR883961.1|20-04-07 1 1 1 0 +Netherlands/NA_589/2020|LR883868.1|20-04-05 1 2 2 0 +node_651 2 5 2.5 0 +England/CAMB-1AE7FF/2020|20-04-29 1 1 1 0 +England/CAMB-762D2/2020|20-03-28 1 4 4 0 +node_652 2 8 4 0 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0 +USA/MN-MDH-1475/2020|MT920008.1|20-03-23 1 2 2 0 +USA/CA-CZB-1615/2020|MT628267.1|20-04-14 1 4 4 0 +node_681 2 8 4 0 +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 1 0 0 0 +Spain/R10_33/2020|LR884127.1|20-03-02 1 1 1 1 +Scotland/CVR3062/2020|20-04-24 1 4 4 0 +Scotland/CVR2435/2020|20-04-14 1 1 1 0 +node_686 2 7 3.5 0 +England/OXON-B0922/2020|20-03-28 1 4 4 0 +AUS/VIC995/2020|MT451680.1|20-03-31 1 1 1 0 +node_687 2 6 3 0 +node_685 4 14 3.5 0 +USA/WA-S4100/2021|MW555971.1|21-01-18 1 3 3 1 +USA/WA-S4074/2021|MW555949.1|21-01-19 1 6 6 2 +node_688 2 30 15 0 +node_684 6 45 7.5 0 +node_683 7 47 6.71429 0 +node_682 8 50 6.25 0 +England/ALDP-CB55B4/2020|20-12-20 1 3 3 0 +England/CAMC-CF4B5D/2020|20-12-21 1 8 8 0 +node_691 2 25 12.5 0 +USA/WI-UW-06/2020|MT772088.1|20-03-21 1 2 2 0 +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 1 1 1 0 +node_692 2 6 3 0 +GHA/34927_S20/2020|MT890226.1|20-05-23 1 2 2 0 +GHA/35563_S37/2020|MT890230.1|20-05-24 1 5 5 0 +node_693 2 8 4 0 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26 4.33333 0 +node_1 1234 5362 4.34522 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_21_roho_stats.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,58 @@ +mutation parent_node child_count occurrence_node offspring_with median_offspring_without single_roho +C241T node_1 22 node_25 1125 16 1.84703 +C8782T node_1 22 node_676 31 16 0.287242 +G1397A node_1 22 node_699 6 28 -0.669007 +G29711T node_1 22 node_667 6 28 -0.669007 +T28144C node_1 22 node_676 31 16 0.287242 +T28688C node_1 22 node_699 6 28 -0.669007 +A25505G node_28 55 node_268 6 39 -0.812913 +A26530G node_28 55 node_354 8 39 -0.687975 +C15324T node_28 55 node_341 26 38 -0.16481 +C15933T node_28 55 node_654 6 39 -0.812913 +C6941T node_28 55 node_268 6 39 -0.812913 +G16968T node_28 55 node_654 6 39 -0.812913 +G25906C node_28 55 node_268 6 39 -0.812913 +G25996T node_28 55 node_268 6 39 -0.812913 +G28882A node_28 55 node_654 6 39 -0.812913 +G28883C node_28 55 node_654 6 39 -0.812913 +T445C node_28 55 node_360 53 25 0.326336 +C1059T node_53 4 node_61 237 34 0.843269 +C18877T node_53 4 node_211 96 34 0.450792 +C2416T node_53 4 node_191 34 96 -0.450792 +C27964T node_61 81 node_108 23 12 0.282547 +C17690T node_211 15 node_260 8 60 -0.875061 +C26735T node_211 15 node_212 60 8 0.875061 +C7765T node_211 15 node_260 8 60 -0.875061 +A16889G node_212 13 node_238 6 26 -0.636822 +C11497T node_212 13 node_238 6 26 -0.636822 +C22444T node_212 13 node_223 26 6 0.636822 +C4543T node_212 13 node_238 6 26 -0.636822 +G15766T node_212 13 node_238 6 26 -0.636822 +G17019T node_212 13 node_238 6 26 -0.636822 +G22992A node_212 13 node_238 6 26 -0.636822 +G28975C node_212 13 node_238 6 26 -0.636822 +G29399A node_212 13 node_238 6 26 -0.636822 +G9526T node_212 13 node_238 6 26 -0.636822 +G29734C node_275 12 node_316 29 50 -0.236572 +C27944T node_361 10 node_366 25 6 0.619789 +G23311C node_361 10 node_386 6 25 -0.619789 +A1987G node_366 4 node_376 6 13 -0.335792 +G204T node_366 4 node_367 13 6 0.335792 +C19488T node_427 128 node_625 6 10 -0.221849 +C23731T node_427 128 node_499 20 9 0.346788 +C3373A node_427 128 node_512 10 9 0.0457575 +G10097A node_427 128 node_499 20 9 0.346788 +G10265A node_427 128 node_599 8 10 -0.09691 +G16813A node_427 128 node_609 6 10 -0.221849 +G21624T node_427 128 node_566 8 10 -0.09691 +G21724T node_427 128 node_589 6 10 -0.221849 +G25617T node_427 128 node_583 10 9 0.0457575 +T19839C node_427 128 node_429 28 9 0.492916 +T29148C node_427 128 node_542 10 9 0.0457575 +C14805T node_676 5 node_682 8 9 -0.0511525 +C26088T node_676 5 node_677 6 10 -0.221849 +G22468T node_676 5 node_689 12 7 0.234083 +G25979T node_676 5 node_682 8 9 -0.0511525 +G28878A node_676 5 node_689 12 7 0.234083 +G29742A node_676 5 node_689 12 7 0.234083 +T9477A node_676 5 node_682 8 9 -0.0511525
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_26_descendants.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,4 @@ +#node_id descendants +node_654 USA/WA-S1222/2020|MT821613.1|20-05-08,USA/WA-S1655/2020|MT834136.1|20-05-29,Spain/R60/2020|LR884131.1|20-04-17,USA/CA-CZB-5682/2020|MW276261.1|20-07-23,England/MILK-A06194/2020|20-10-01,England/CAMC-B32AA2/2020|20-11-05, +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 USA/CA-QDX-3684/2021|MW545275.1|21-01-08, +England/LIVE-DAB556/2020|20-10-18 England/LIVE-DAB556/2020|20-10-18,
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_26_recombination.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,137 @@ +#recomb_node_id breakpoint-1_interval breakpoint-2_interval donor_node_id donor_is_sibling donor_parsimony acceptor_node_id acceptor_is_sibling acceptor_parsimony original_parsimony min_starting_parsimony recomb_parsimony +node_654 (0,241) (14408,19839) node_191 n 9 node_429 n 3 7 3 3 +node_654 (0,14408) (19839,29784) node_429 n 3 node_427 n 4 7 3 3 +node_654 (0,14408) (28881,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (0,14408) (23403,29784) node_429 n 3 node_427 n 4 7 3 3 +node_654 (241,14408) (28882,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (1059,3037) (15933,19839) node_108 n 10 node_429 n 3 7 3 3 +node_654 (3037,14408) (28883,29784) node_429 n 3 node_191 n 9 7 3 3 +node_654 (3037,14408) (16968,19839) node_108 n 10 node_429 n 3 7 3 3 +node_654 (15933,15933) (28883,29784) node_429 n 3 node_191 n 9 7 3 3 +node_654 (15933,15933) (28882,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (15933,15933) (28881,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (15933,15933) (23403,29784) node_429 n 3 node_427 n 4 7 3 3 +node_654 (15933,15933) (19839,29784) node_429 n 3 node_427 n 4 7 3 3 +node_654 (16968,19839) (28883,29784) node_429 n 3 node_191 n 9 7 3 3 +node_654 (16968,19839) (28881,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (16968,19839) (28882,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (16968,16968) (28881,29784) node_429 n 3 node_426 n 5 7 3 3 +node_654 (16968,16968) (23403,29784) node_429 n 3 node_427 n 4 7 3 3 +node_654 (19839,23403) (28882,29784) node_427 n 4 node_429 n 3 7 3 3 +node_654 (19839,23403) (28883,29784) node_427 n 4 node_429 n 3 7 3 3 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (0,241) (2516,10323) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (0,1059) (3037,3712) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (0,1059) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (0,1059) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (0,1059) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (0,1059) (10323,22018) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (241,1059) (2597,10323) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (241,1059) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (3712,10323) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (10323,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2516,2516) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,2597) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,2597) (3712,10323) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,2597) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (5780,10323) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,2597) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (10323,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,3037) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (2597,2597) (10323,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (10323,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (5999,10323) node_1 n 24 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (3712,3712) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (7528,10323) node_1 n 24 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (10323,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5780,5780) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (10323,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (5999,5999) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,10323) (14408,15452) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,7528) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,7528) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,7528) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,10323) (12878,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,7528) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,7528) (11866,20268) node_73 n 17 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (7528,7528) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (10323,10323) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (10323,10323) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (10323,10323) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (10323,10323) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (10323,10323) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (13378,14408) node_1 n 24 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (14408,20268) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (11866,11866) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (12878,12878) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (12878,12878) (14408,20268) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (12878,12878) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (12878,12878) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (12878,12878) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (12878,12878) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,13378) (15452,20268) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,14408) (19164,20268) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,14408) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,14408) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,14408) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,13378) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,14408) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,14408) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (13378,13378) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (15452,15452) (20268,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (15452,15452) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (15452,15452) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (15452,15452) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (15452,15452) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (19164,19164) (21974,22018) node_275 n 19 node_135 y 15 19 15 14 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (19164,19164) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (19164,19164) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (19164,19164) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (19164,19164) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (20268,20268) (22018,22917) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (20268,20268) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (20268,20268) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (20268,20268) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (21974,22018) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (21974,21974) (23403,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (21974,22018) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (21974,22018) (24349,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (21974,21974) (28272,29362) node_135 y 15 node_133 n 17 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (21974,21974) (25563,26681) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (22018,23403) (25563,27964) node_108 n 19 node_135 y 15 19 15 15 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (22917,23403) (28272,29362) node_135 y 15 node_133 n 17 19 15 16 +USA/CA-QDX-3684/2021|MW545275.1|21-01-08 (24349,24349) (28272,29362) node_135 y 15 node_133 n 17 19 15 16 +England/LIVE-DAB556/2020|20-10-18 (174,241) (3037,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (174,241) (14408,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (174,1059) (23403,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (241,1059) (14408,27964) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (1059,3037) (23403,27964) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (3037,14408) (25546,27964) node_108 n 3 node_133 n 3 7 3 2
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_27_descendants.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,2 @@ +#node_id descendants +England/LIVE-DAB556/2020|20-10-18 England/LIVE-DAB556/2020|20-10-18,
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_27_recombination.tabular Mon Feb 02 14:38:06 2026 +0000 @@ -0,0 +1,9 @@ +#recomb_node_id breakpoint-1_interval breakpoint-2_interval donor_node_id donor_is_sibling donor_parsimony acceptor_node_id acceptor_is_sibling acceptor_parsimony original_parsimony min_starting_parsimony recomb_parsimony +England/LIVE-DAB556/2020|20-10-18 (174,174) (3037,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (174,1059) (3037,27964) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (174,1059) (14408,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (174,3037) (23403,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (174,174) (23403,25546) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (1059,3037) (14408,27964) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (3037,14408) (23403,27964) node_108 n 3 node_133 n 3 7 3 2 +England/LIVE-DAB556/2020|20-10-18 (14408,23403) (25546,27964) node_108 n 3 node_133 n 3 7 3 2