# HG changeset patch
# User iuc
# Date 1770043086 0
# Node ID 359daa4b6d100e844b1b1a429eaa115b24f2c43b

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/usher commit d44fdcd836306a2096d50bebb28d8faacdb0fbfd

diff -r 000000000000 -r 359daa4b6d10 macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,36 @@
+<macros>
+    <token name="@TOOL_VERSION@">0.6.6</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">23.2</token>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">usher</xref>
+        </xrefs>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">usher</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1101/2020.09.26.314971</citation>
+            <citation type="doi">10.1101/2021.04.03.438321</citation>
+            <citation type="doi">10.1101/2021.08.04.455157</citation>
+        </citations>
+    </xml>
+    <xml name="version">
+        <version_command>usher --version</version_command>
+    </xml>
+    <macro name="sanitize_string" >
+        <sanitizer invalid_char="">
+            <valid initial="string.letters,string.digits">
+                <add value="_"/>
+                <add value="-"/>
+                <add value="."/>
+                <add value=":"/>
+                <add value=","/>
+            </valid>
+        </sanitizer>
+    </macro>
+</macros>
diff -r 000000000000 -r 359daa4b6d10 ripples.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ripples.xml	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,94 @@
+<tool id='usher_ripples' name='UShER RIPPLES' version='@TOOL_VERSION@+galaxy@VERSION_SUFFIX@' profile='@PROFILE@'>
+    <description>detect recombination events in large mutation annotated tree (MAT) files.</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="xrefs"/>
+    <expand macro='requirements' />
+    <expand macro="version"/>
+    <command detect_errors='exit_code'><![CDATA[
+   ## get correct extension filenames
+   ln -sf '$input_mat' '$input_mat.element_identifier' &&
+
+   ripples
+   --input-mat '$input_mat.element_identifier'
+
+   --branch-length $branch_length
+   --min-coordinate-range $min_coordinate_range
+   --max-coordinate-range $max_coordinate_range
+   --samples-filename '$samples_filename'
+   --parsimony-improvement $parsimony_improvement
+   --num-descendants $num_descendants
+
+   --outdir ./
+   --threads \${GALAXY_SLOTS:-1} > output_stdout.txt
+
+ ]]>    </command>
+    <inputs>
+        <param argument="--input-mat" type="data" format="protobuf3" label="Mutation-annotated tree object" help="Load a mutation annotated tree file, in protocol-buffers format (protobuf3)."/>
+        <param argument="--branch-length" type="integer" value="3" min="0" label="Minimum branch length" help="Minimum length of the branch to consider for recombination events. Default = 3." />
+        <param argument="--min-coordinate-range" type="integer" value="1000" min="0" label="Minimal coordinate range" help="Minimum range of the genomic coordinates of the mutations on the recombinant branch. Default = 1,000." />
+        <param argument="--max-coordinate-range" type="integer" value="10000000" min="0" label="Maximal coordinate range" help="Maximum range of the genomic coordinates of the mutations on the recombinant branch. Default = 10,000,000." />
+        <param argument="--samples-filename" type="data" format="txt" label="Sample restriction file" help="Restrict the search to the ancestors of the samples specified in the input file." />
+        <param argument="--parsimony-improvement" type="integer" value="3" min="0" label="Parsimony improvement" help="Minimum improvement in parsimony score of the recombinant sequences during the partial placement. Default = 3." />
+        <param argument="--num-descendants" type="integer" value="10" label="Number of descendants" help="Minimum number of leaves that node should have to be considered for recombinatino. Default = 10." />
+    </inputs>
+    <outputs>
+        <data name="recombination" format="tabular" from_work_dir='recombination.tsv' label="${tool.name} on ${on_string}: recombinations" >
+            <actions>
+                <action name="column_names" type="metadata" default="recomb_node_id,breakpoint-1_interval,breakpoint-2_interval,donor_node_id,donor_is_sibling,donor_parsimony,acceptor_node_id,acceptor_is_sibling,acceptor_parsimony,original_parsimony,min_starting_parsimony,recomb_parsimony" />
+            </actions>
+        </data>
+        <data name="descendants" format="tabular" from_work_dir='descendants.tsv' label="${tool.name} on ${on_string}: descendants" >
+            <actions>
+                <action name="column_names" type="metadata" default="node_id,descendants" />
+            </actions>
+        </data>
+        
+    </outputs>
+    <tests>
+        <test expect_num_outputs="2">
+            <param name="input_mat" value="mutation_annotation.pb" ftype="protobuf3"/>
+            <param name="samples_filename" value="sample_names.txt" ftype="txt"/>
+            <output name="descendants" file="test_26_descendants.tabular" ftype="tabular"/>
+            <output name="recombination" file="test_26_recombination.tabular" ftype="tabular"/>
+        </test>
+        <test expect_num_outputs="2">
+            <param name="input_mat" value="mutation_annotation.pb" ftype="protobuf3"/>
+            <param name="samples_filename" value="sample_names.txt" ftype="txt"/>
+            <param name="num_descendants" value="20" />
+            <param name="parsimony_improvement" value="5" />
+            <param name="branch_length" value="2" />
+            <output name="descendants" file="test_27_descendants.tabular" ftype="tabular"/>
+            <output name="recombination" file="test_27_recombination.tabular" ftype="tabular"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+
+.. class:: infomark
+
+**Purpose**
+
+RIPPLES (Recombination Inference using Phylogenetic PLacEmentS) is a program used to detect recombination events in large mutation annotated tree (MAT) files.
+
+----
+
+RIPPLES is a program to rapidly and sensitively detect recombinant nodes and their ancestors in a mutation-annotated tree (MAT). RIPPLES exploits the fact that recombinant lineages arising from diverse genomes will often be found on “long branches” which result from accommodating the divergent evolutionary histories of the two parental haplotypes. Therefore, RIPPLES first identifies long branches in a MAT. RIPPLES then exhaustively breaks the potential recombinant sequence into distinct segments that are differentiated by mutations on the recombinant sequence and separated by up to two breakpoints. For each set of breakpoints, RIPPLES places each of its corresponding segments using maximum parsimony to find the two parental nodes – a donor and an acceptor – that result in the highest parsimony score improvement relative to the original placement on the global phylogeny. The nodes for which a set of breakpoints along with two parental nodes can be identified that provide a parsimony score improvement above a user-specified threshold are reported as recombinants.
+
+.. class:: infomark
+
+**RIPPLES Common Options**
+
+ - input-mat: Input mutation-annotated tree file [REQUIRED]. If only this argument is set, print the count of samples and nodes in the tree.
+ - branch-length (-l): Minimum length of the branch to consider for recombination events. Default = 3.
+ - min-coordinate-range (-r): Minimum range of the genomic coordinates of the mutations on the recombinant branch. Default = 1,000.
+ - max-coordinate-range (-R): Maximum range of the genomic coordinates of the mutations on the recombinant branch. Default = 10,000,000.
+ - samples-filename (-s): Restrict the search to the ancestors of the samples specified in the input file.
+ - parsimony-improvement (-p): Minimum improvement in parsimony score of the recombinant sequences during the partial placement. Default = 3.
+ - num-descendants (-n): Minimum number of leaves that node should have to be considered for recombinatino. Default = 10.
+
+You can find more information in the `RIPPLES official documentation page <https://usher-wiki.readthedocs.io/en/latest/ripples.html>`_.
+
+    ]]>    </help>
+    <expand macro="citations" />
+</tool>
diff -r 000000000000 -r 359daa4b6d10 test-data/global_phylo.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/global_phylo.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Shanghai_SH0007_2020,Hangzhou_ZJU-07_2020,Wuhan_IPBCAMS-WH-03_2019,Wuhan_WH01_2019,Wuhan_WIV07_2019,Shanghai_SH0093_2020,Wuhan_HBCDC-HB-01_2019,Wuhan_IPBCAMS-WH-01_2019,Wuhan_IVDC-HB-04_2020,Wuhan_IVDC-HB-05_2019,Wuhan_WIV05_2019,Sweden_01_2020,Taiwan_2_2020,USA_CA2_2020,Shanghai_SH0040_2020,Singapore_7_2020,Australia_VIC02_2020,France_IDF0515_2020,Hangzhou_ZJU-01_2020,Shanghai_SH0037_2020,Nepal_61_2020,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,China_WH-09_2020,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Jiangxi_IVDC-JX-002_2020,Zhejiang_WZ-01_2020,Japan_KY-V-029_2020,Hangzhou_ZJU-03_2020,Zhejiang_WZ-02_2020,Netherlands_Utrecht_12_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Singapore_1_2020,Taiwan_NTU02_2020,England_SHEF-BFD36_2020,France_IDF0626_2020,Malaysia_MKAK-CL-2020-7554_2020,Cambodia_0012_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,(USA_CA-CDPH-UC2_2020,(USA_CA9_2020,(USA_CA-CDPH-UC3_2020,USA_CA-CDPH-UC4_2020)5)4)3,(Australia_NSW08_2020,Australia_NSW10_2020)6,(Germany_NRW-10_2020,Germany_NRW-09_2020,Poland_PL_P1_2020,(Germany_NRW-04_2020,Germany_NRW-07_2020,(Germany_NRW-08_2020,(Germany_NRW-01_2020,Netherlands_Limburg_4_2020)10)9)8,(Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020)11)7,(Malaysia_MKAK-CL-2020-5045_2020,(Singapore_2_2020,(Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020)15)14)13,(Jiangsu_JS01_2020,Shanghai_SH0031_2020)16,(Australia_NSW02_2020,(Hangzhou_ZJU-06_2020,(Shanghai_SH0085_2020,Shanghai_SH0094_2020)19)18)17,(India_1-27_2020,Shanghai_SH0011_2020,Fujian_13_2020,(Singapore_11_2020,USA_WI1_2020)21)20,(Wuhan_HBCDC-HB-05_2020,Shandong_IVDC-SD-001_2020,England_200960041_2020,Australia_NSW05_2020,(Georgia_Tb-82_2020,Australia_NSW09_2020,(Canada_BC_25211_2020,Kuwait_KU09_2020)24,(Kuwait_KU18_2020,Kuwait_KU12_2020,Australia_NSW06_2020)25)23,(Shanghai_SH0022_2020,Shanghai_SH0023_2020)26,(Taiwan_CGMH-CGU-04_2020,(Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020)28)27,Kuwait_KU17_2020,(Canada_BC_17397_2020,Canada_BC_13297_2020)31,(Australia_QLD09_2020,Australia_NSW07_2020)32,(USA_NY1-PV08001_2020,Canada_BC_37_0-2_2020,Canada_BC_69243_2020,(England_200990002_2020,Germany_BavPat2_2020)34)33)22,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020)35,(Jiangsu_JS02_2020,Shanghai_SH0008_2020,USA_CA5_2020)36,(Wuhan_WIV02_2019,(USA_CA8_2020,Wuhan_HBCDC-HB-02_2019)38)37,(Australia_NSW03_2020,Australia_VIC03_2020)39,(Chongqing_IVDC-CQ-001_2020,(Japan_Hu_DP_Kng_19-027_2020,(Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020)42)41)40,(Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020)43,(Hangzhou_ZJU-09_2020,Australia_VIC01_2020)44,(Japan_OS-20-07-1_2020,Chongqing_ZX01_2020)45,(USA_MA1_2020,(Shanghai_SH0058_2020,((USA_CA3_2020,USA_CA4_2020)49,(Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020)50)48)47)46,((France_B2334_2020,France_B2340_2020)52,((Georgia_Tb-468_2020,Georgia_Tb-537_2020,Georgia_Tb-54_2020)54,Italy_SPL1_2020)53)51,(Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020)57,(Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020)58,(England_20102000106_2020,(England_09c_2020,(Brazil_ES-225_2020,England_20100001406_2020,(England_200940527_2020,(England_200990725_2020,England_200990724_2020)63)62)61)60,(England_200960515_2020,(Finland_FIN01032020_2020,(Finland_FIN-274_2020,Finland_FIN03032020B_2020)66)65)64,(Brazil_SPBR-10_2020,Switzerland_1000477102_2020,Brazil_SPBR-02_2020,England_200990006_2020,Netherlands_Utrecht_18_2020)67)59,(USA_CA6_2020,Taiwan_4_2020)68,(Netherlands_Utrecht_19_2020,Netherlands_Limburg_6_2020,Netherlands_Naarden_1364774_2020,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020)70,(Netherlands_Oss_1363500_2020,Netherlands_Tilburg_1363354_2020)71)69,(France_RA739_2020,England_200690300_2020)72,(Singapore_8_2020,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020)76)75,(Shanghai_SH0086_2020,(Finland_FIN-114_2020,(Germany_BavPat1_2020,Shanghai_SH0014_2020)79)78,(Finland_FIN-25_2020,Belgium_DB-03023_2020,Denmark_SSI-102_2020,Denmark_SSI-02_2020,Belgium_BM-03012_2020,England_20100022706_2020,Denmark_SSI-04_2020,Taiwan_NTU03_2020,Finland_FIN03032020A_2020,Switzerland_GE4984_2020,Switzerland_AG0361_2020,Finland_FIN-266_2020,Italy_CDG1_2020,Luxembourg_Lux1_2020,Japan_SMU-0311S3_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Denmark_SSI-03_2020,Netherlands_Gelderland_2_2020,Brazil_SPBR-01_2020,Georgia_Tb-273_2020,Ireland_Limerick-19934_2020,Belgium_SH-03014_2020,(((England_20100004706_2020,England_20100004806_2020)83,(England_20100005406_2020,England_200990660_2020)84)82,(England_20100121006_2020,England_20100121007_2020)85)81,(France_HF2174_2020,France_GE1977_2020,France_HF1684_2020,(France_HF1995_2020,France_HF2239_2020)87)86,Belgium_VAG-03013_2020,(Netherlands_Utrecht_1363564_2020,(Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020)90)89,(England_20099107406_2020,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diff -r 000000000000 -r 359daa4b6d10 test-data/global_samples.vcf.gz
Binary file test-data/global_samples.vcf.gz has changed
diff -r 000000000000 -r 359daa4b6d10 test-data/mutation_annotation.pb
Binary file test-data/mutation_annotation.pb has changed
diff -r 000000000000 -r 359daa4b6d10 test-data/new_samples.vcf.gz
Binary file test-data/new_samples.vcf.gz has changed
diff -r 000000000000 -r 359daa4b6d10 test-data/rename_samples.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rename_samples.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,4 @@
+England/BRIS-1853249/2020|20-04-02	Spain/BRIS-1853249/2020|20-04-02_A
+Wales/PHWC-25B04/2020|20-03-24	Spain/BRIS-1853249/2020|20-04-02_B
+NPL/61-TW/2020|MT072688.1|20-01-13	Spain/BRIS-1853249/2020|20-04-02_C
+Wales/LIVE-A6831/2020|20-03-16	Spain/BRIS-1853249/2020|20-04-02_D
diff -r 000000000000 -r 359daa4b6d10 test-data/sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1096 @@
+England/BRIS-1853249/2020|20-04-02
+Wales/PHWC-25B04/2020|20-03-24
+NPL/61-TW/2020|MT072688.1|20-01-13
+Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB1317/2020|20-04-09
+Scotland/EDB354/2020|20-03-30
+England/SHEF-BFF8B/2020|20-03-25
+England/LCST-24D7202/2020|20-06-22
+England/SHEF-BFFC7/2020|20-03-25
+England/PHEC-1E01E/2020|20-04-03
+DP0476/2020|LC571003.1|20-02-16
+DP0191/2020|LC570980.1|20-02-15
+England/LIVE-A5D06/2020|20-03-17
+England/LIVE-A065B/2020|20-05-27
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+NED/NB02_13KS/2020|MT457397.1|20-04-29
+USA/CA-QDX-1986/2020|MW190732.1|20-03-18
+USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+USA/CA-CZB-1015/2020|MT438733.1|20-04-22
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_01_annotated_tree.pb
Binary file test-data/test_01_annotated_tree.pb has changed
diff -r 000000000000 -r 359daa4b6d10 test-data/test_01_condensed_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_01_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_02_mutation_path.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_02_mutation_path.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_85:A27669G 
+Sample2	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
+Sample5	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_02_uncondensed_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_02_uncondensed_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
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\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_03_condensed_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_03_condensed_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
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_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_78:2,node_30_condensed_4_leaves:0)node_74:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_80:1)node_79:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_81:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_83:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_86:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_90:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_92:2,(node_41_condensed_2_leaves:0)node_93:1,(node_42_condensed_2_leaves:0)node_94:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_95:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_98:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_102:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_105:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_108:1,(node_46_condensed_16_leaves:0)node_109:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_114:1)node_113:1,node_34_condensed_7_leaves:0)node_91:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_115:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_116:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_120:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_121:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_119:2,node_25_condensed_15_leaves:0)node_73:1,node_11_condensed_3_leaves:0)node_70:3,node_1_condensed_27_leaves:0)node_1:0;
diff -r 000000000000 -r 359daa4b6d10 test-data/test_03_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_03_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_129:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_132:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_140:1,node_14_condensed_6_leaves:0)node_136:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_142:1,(node_16_condensed_2_leaves:0)node_145:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_149:3,(node_37_condensed_2_leaves:0)node_150:2)node_148:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_146:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_157:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_154:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_160:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_161:2,node_2_condensed_10_leaves:0)node_128:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_3:1,(node_4_condensed_2_leaves:0)node_6:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_9:2)node_8:2,node_5_condensed_5_leaves:0)node_7:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_12:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_15:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_18:2)node_17:1)node_16:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_19:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_23:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_22:2,(node_19_condensed_2_leaves:0)node_25:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_26:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_28:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_29:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_31:2)node_30:1)node_21:4,(node_7_condensed_3_leaves:0)node_32:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_33:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_34:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_69:1,node_9_condensed_2_leaves:0)node_36:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_37:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_41:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_44:1)node_43:1,((France_B2334_2020:1,France_B2340_2020:1)node_49:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_51:1,Italy_SPL1_2020:0)node_48:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_57:1)node_55:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_62:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_60:1)node_54:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_65:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_66:1)node_64:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984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\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_04_mutation_paths.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_04_mutation_paths.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_85:A27669G 
+Sample2	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
+Sample5	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_04_subtree_1.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_04_subtree_1.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+(((((Sample5:0,Sample4:0)node_87:1,Sample3:0,Sample2:0)node_86:1,Sample1:0)node_85:1,((Germany_NRW-08_2020:0,Germany_NRW-01_2020:0,Netherlands_Limburg_4_2020:0)node_21:2,Germany_NRW-04_2020:0,Germany_NRW-07_2020:1)node_20:2,Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,Germany_NRW-05_2020:0,Germany_NRW-03_2020:0,Germany_NRW-02-1_2020:0,Germany_NRW-06_2020:0,Brazil_SPBR-11_2020:0)node_19:2,Wuhan_HBCDC-HB-01_2019:1,Australia_QLD09_2020:6)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_04_subtree_1_expanded.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_04_subtree_1_expanded.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,2 @@
+node_5_condensed_5_leaves: Germany_NRW-05_2020 Germany_NRW-03_2020 Germany_NRW-02-1_2020 Germany_NRW-06_2020 Brazil_SPBR-11_2020 
+node_27_condensed_3_leaves: Germany_NRW-08_2020 Germany_NRW-01_2020 Netherlands_Limburg_4_2020 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_04_subtree_1_mutations.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_04_subtree_1_mutations.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,27 @@
+node_1: 
+node_19: G1440A,G2891A
+node_85: A27669G
+node_86: G14948A
+node_87: A23013G
+Sample5: 
+Sample4: 
+Sample3: 
+Sample2: 
+Sample1: 
+node_20: C4655T,C22323T
+node_21: G8422A,C29546A
+Germany_NRW-08_2020: 
+Germany_NRW-01_2020: 
+Netherlands_Limburg_4_2020: 
+Germany_NRW-04_2020: 
+Germany_NRW-07_2020: T13494C
+Germany_NRW-10_2020: G7798T
+Germany_NRW-09_2020: C27849T
+Poland_PL_P1_2020: G198A
+Germany_NRW-05_2020: 
+Germany_NRW-03_2020: 
+Germany_NRW-02-1_2020: 
+Germany_NRW-06_2020: 
+Brazil_SPBR-11_2020: 
+Wuhan_HBCDC-HB-01_2019: T21656A
+Australia_QLD09_2020: G1397A,C11074T,G11083T,T28688C,G29374A,G29742T
diff -r 000000000000 -r 359daa4b6d10 test-data/test_04_uncondensed_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_04_uncondensed_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,Spain_Valencia4_2020,Chile_Santiago_op2d1_2020,Spain_Valencia5_2020,Chile_Santiago-1_2020,Chile_Santiago_op3d1_2020,Chile_Santiago_op4d1_2020:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,Shanghai_SH0032_2020,Vietnam_VR03-38142_2020,Vietnam_38142_2020:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,Australia_QLD01_2020,Shanghai_SH0002_2020,Shanghai_SH0003_2020,USA_CA7_2020,Australia_QLD04_2020,Singapore_4_2020:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,Shandong_LY006_2020,Shandong_LY004_2020,Shandong_LY008_2020:0)node_7:1,(Chile_Talca-1_2020,Chile_Talca-2_2020:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(USA_CA-CDPH-UC5_2020,USA_CA-CDPH-UC6_2020:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,USA_WA1_2020,Fujian_8_2020,Hangzhou_ZJU-08_2020:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,Japan_TY-WK-501_2020,Japan_TY-WK-521_2020:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,Beijing_235_2020,Beijing_231_2020,Beijing_105_2020:0)node_16:2,Wuhan_WH04_2020,Wuhan_HBCDC-HB-03_2020,Hangzhou_ZJU-02_2020,Shanghai_SH0024_2020,Shanghai_SH0043_2020,Shanghai_SH0013_2020,Australia_NSW01_2020,Taiwan_3_2020,Taiwan_NTU01_2020,Belgium_GHB-03021_2020:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,USA_CA9_2020,USA_CA-CDPH-UC4_2020:0)node_17:1,(Australia_NSW08_2020,Australia_NSW10_2020:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(Germany_NRW-08_2020,Germany_NRW-01_2020,Netherlands_Limburg_4_2020:0)node_21:2)node_20:2,Germany_NRW-05_2020,Germany_NRW-03_2020,Germany_NRW-02-1_2020,Germany_NRW-06_2020,Brazil_SPBR-11_2020:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,Singapore_2_2020,Singapore_6_2020,Malaysia_MKAK-CL-2020-5047_2020:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(Shanghai_SH0022_2020,Shanghai_SH0023_2020:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,Taiwan_CGMH-CGU-03_2020,Taiwan_CGMH-CGU-05_2020:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(France_IDF0373_2020,France_IDF0386-islP1_2020,France_IDF0372_2020:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,USA_CA8_2020,Wuhan_HBCDC-HB-02_2019:0)node_39:1,(Singapore_8_2020:1,(Singapore_5_2020,Singapore_9_2020,Singapore_10_2020:0)node_41:1,Australia_NSW03_2020,Australia_VIC03_2020:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,Chongqing_IVDC-CQ-001_2020,Singapore_3_2020,Japan_Hu_DP_Kng_19-020_2020:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(USA_CA3_2020,USA_CA4_2020:0)node_46:1,Canada_ON-PHL2445_2020,Canada_ON-VIDO-01_2020:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(England_200940527_2020,England_200990725_2020,England_200990724_2020:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(Finland_FIN01032020_2020,Finland_FIN-274_2020,Finland_FIN03032020B_2020:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(Netherlands_Dalen_1363624_2020,Netherlands_Loon_op_zand_1363512_2020:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((England_20100121006_2020,England_20100121007_2020:0)node_61:2,England_20100004706_2020,England_20100004806_2020,England_20100005406_2020,England_200990660_2020:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(France_HF1995_2020,France_HF2239_2020:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,Netherlands_Utrecht_6_2020,Netherlands_Utrecht_1363628_2020:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,France_HF2196_2020,Switzerland_GE6679_2020,Switzerland_BE2536_2020,Switzerland_GE4135_2020:0)node_66:1,(Hungary_mbl1_2020:1,Switzerland_GE5373_2020,Switzerland_GE3121_2020,Panama_328677_2020,Georgia_Tb-712_2020,Spain_Galicia201663_2020:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(Netherlands_Limburg_3_2020,Netherlands_Utrecht_2_2020:0)node_69:2,(Switzerland_GR2988_2020,Switzerland_GR3043_2020:0)node_70:1,(Switzerland_VD0503_2020,Switzerland_VD5615_2020:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,Switzerland_GE8102_2020,Brazil_SPBR-08_2020,Brazil_SPBR-13_2020:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,Switzerland_GE1402_2020,Switzerland_AG7120_2020,Netherlands_Helmond_1363548_2020:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,Switzerland_GE3895_2020,Switzerland_GE0199_2020,Switzerland_BL0902_2020,Switzerland_GE9586_2020,Switzerland_1000477806_2020,Switzerland_BS0914_2020:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(Netherlands_NoordHolland_1_2020,Netherlands_Utrecht_10_2020,Germany_NRW-011_2020,Netherlands_Utrecht_13_2020,Netherlands_Gelderland_3_2020,Finland_FIN-508_2020,Brazil_SPBR-04_2020,Brazil_SPBR-07_2020,Netherlands_Utrecht_4_2020,Netherlands_Limburg_2_2020,Brazil_SPBR-03_2020,Netherlands_Utrecht_5_2020,Netherlands_Gelderland_1_2020,Ireland_Dublin-19072_2020,Netherlands_Utrecht_7_2020,Netherlands_Overijssel_1_2020:0)node_77:1,(Belgium_UMF-03025_2020:0,(Belgium_DBD-03024_2020,Belgium_QKJ-03015_2020:0)node_79:1)node_78:1,Mexico_CDMX-InDRE_01_2020,Vietnam_39607_2020,Netherlands_Overijssel_2_2020,Switzerland_1000477796_2020,England_20099038206_2020,Vietnam_CM296_2020,Vietnam_CM295_2020:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,Switzerland_TI9486_2020,France_N2223_2020,Netherlands_Utrecht_3_2020:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,France_B2337_2020,Finland_FIN-455_2020,France_B2336_2020,France_B2335_2020,France_B2343_2020,France_B2346_2020:0)node_82:2,Italy_CDG1_2020,Netherlands_Zeewolde_1365080_2020,Georgia_Tb-477_2020,Japan_SMU-0311S2_2020,Brazil_SPBR-01_2020,Ireland_Limerick-19934_2020,Brazil_SPBR-06_2020,Brazil_SPBR-05_2020,Brazil_SPBR-09_2020,France_GE1973_2020,Ireland_Limerick-19933_2020,Denmark_SSI-09_2020,Ireland_Limerick-19935_2020,Netherlands_Utrecht_11_2020,Netherlands_Utrecht_8_2020:0)node_59:1,Finland_FIN-114_2020,Germany_BavPat1_2020,Shanghai_SH0014_2020:0)node_58:3,Wuhan_HBCDC-HB-03_2019,Wuhan_IVDC-HB-01_2019,Wuhan_WIV06_2019,Wuhan_WIV04_2019,Wuhan_IPBCAMS-WH-04_2019,Wuhan_IPBCAMS-WH-02_2019,Wuhan_WH03_2020,Zhejiang_WZ-02_2020,Nonthaburi_61_2020,Nonthaburi_74_2020,Hangzhou_ZJU-05_2020,Hangzhou_HZ-1_2020,Finland_1_2020,England_200641094_2020,England_200690756_2020,Japan_NA-20-05-1_2020,Taiwan_CGMH-CGU-01_2020,Japan_OS-20-07-1_2020,Chongqing_ZX01_2020,Jiangsu_IVDC-JS-001_2020,Hangzhou_HZCDC0001_2020,Hangzhou_ZJU-04_2020,Jiangsu_JS03_2020,USA_CA6_2020,Taiwan_4_2020,France_RA739_2020,England_200690300_2020:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_05_current_tree.nw
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_05_current_tree.nw	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
diff -r 000000000000 -r 359daa4b6d10 test-data/test_05_parsimony_scores.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_05_parsimony_scores.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1766 @@
+#Sample	Tree node	Parsimony score	Optimal (y/n)	Parsimony-increasing mutations (for optimal nodes)
+Sample1	node_1	3		n	N/A
+Sample1	node_2	4		n	N/A
+Sample1	Shanghai_SH0007_2020	4		n	N/A
+Sample1	Hangzhou_ZJU-07_2020	4		n	N/A
+Sample1	Wuhan_IPBCAMS-WH-03_2019	4		n	N/A
+Sample1	Wuhan_WH01_2019	4		n	N/A
+Sample1	Wuhan_WIV07_2019	4		n	N/A
+Sample1	Shanghai_SH0093_2020	4		n	N/A
+Sample1	Wuhan_HBCDC-HB-01_2019	4		n	N/A
+Sample1	Wuhan_IPBCAMS-WH-01_2019	4		n	N/A
+Sample1	Wuhan_IVDC-HB-04_2020	4		n	N/A
+Sample1	Wuhan_IVDC-HB-05_2019	4		n	N/A
+Sample1	Wuhan_WIV05_2019	4		n	N/A
+Sample1	Sweden_01_2020	4		n	N/A
+Sample1	Taiwan_2_2020	4		n	N/A
+Sample1	USA_CA2_2020	4		n	N/A
+Sample1	Shanghai_SH0040_2020	4		n	N/A
+Sample1	Singapore_7_2020	4		n	N/A
+Sample1	Australia_VIC02_2020	4		n	N/A
+Sample1	France_IDF0515_2020	4		n	N/A
+Sample1	Hangzhou_ZJU-01_2020	4		n	N/A
+Sample1	Shanghai_SH0037_2020	4		n	N/A
+Sample1	Nepal_61_2020	4		n	N/A
+Sample1	China_WH-09_2020	4		n	N/A
+Sample1	Jiangxi_IVDC-JX-002_2020	4		n	N/A
+Sample1	Zhejiang_WZ-01_2020	4		n	N/A
+Sample1	Japan_KY-V-029_2020	4		n	N/A
+Sample1	Hangzhou_ZJU-03_2020	4		n	N/A
+Sample1	Netherlands_Utrecht_12_2020	4		n	N/A
+Sample1	Singapore_1_2020	4		n	N/A
+Sample1	Taiwan_NTU02_2020	4		n	N/A
+Sample1	England_SHEF-BFD36_2020	4		n	N/A
+Sample1	France_IDF0626_2020	4		n	N/A
+Sample1	Malaysia_MKAK-CL-2020-7554_2020	4		n	N/A
+Sample1	Cambodia_0012_2020	4		n	N/A
+Sample1	node_17	4		n	N/A
+Sample1	node_18	4		n	N/A
+Sample1	node_19	1		y	G1440A
+Sample1	node_22	4		n	N/A
+Sample1	node_23	4		n	N/A
+Sample1	node_24	4		n	N/A
+Sample1	node_27	4		n	N/A
+Sample1	node_28	4		n	N/A
+Sample1	node_37	4		n	N/A
+Sample1	node_38	4		n	N/A
+Sample1	node_39	4		n	N/A
+Sample1	node_40	4		n	N/A
+Sample1	node_42	4		n	N/A
+Sample1	node_43	4		n	N/A
+Sample1	node_44	4		n	N/A
+Sample1	node_47	4		n	N/A
+Sample1	node_50	4		n	N/A
+Sample1	node_55	4		n	N/A
+Sample1	node_58	4		n	N/A
+Sample1	node_1_condensed_27_leaves	4		n	N/A
+Sample1	Wuhan_HBCDC-HB-06_2020	6		n	N/A
+Sample1	Wuhan_HBCDC-HB-02_2020	6		n	N/A
+Sample1	Wuhan_HBCDC-HB-04_2020	6		n	N/A
+Sample1	Shanghai_SH0075_2020	6		n	N/A
+Sample1	Shanghai_SH0010_2020	6		n	N/A
+Sample1	Tianmen_HBCDC-HB-07_2020	6		n	N/A
+Sample1	Shanghai_SH0041_2020	6		n	N/A
+Sample1	India_1-31_2020	6		n	N/A
+Sample1	Shanghai_SH0009_2020	6		n	N/A
+Sample1	Malaysia_MKAK-CL-2020-5096_2020	6		n	N/A
+Sample1	node_3	6		n	N/A
+Sample1	node_4	6		n	N/A
+Sample1	node_5	6		n	N/A
+Sample1	node_7	6		n	N/A
+Sample1	node_8	6		n	N/A
+Sample1	England_02_2020	6		n	N/A
+Sample1	node_9	6		n	N/A
+Sample1	node_13	6		n	N/A
+Sample1	node_15	6		n	N/A
+Sample1	node_16	6		n	N/A
+Sample1	node_2_condensed_10_leaves	6		n	N/A
+Sample1	USA_CA-CDPH-UC2_2020	5		n	N/A
+Sample1	USA_CA-CDPH-UC3_2020	5		n	N/A
+Sample1	node_3_condensed_2_leaves	5		n	N/A
+Sample1	node_4_condensed_2_leaves	5		n	N/A
+Sample1	Germany_NRW-10_2020	2		n	N/A
+Sample1	Germany_NRW-09_2020	2		n	N/A
+Sample1	Poland_PL_P1_2020	2		n	N/A
+Sample1	node_20	2		n	N/A
+Sample1	node_5_condensed_5_leaves	2		n	N/A
+Sample1	Malaysia_MKAK-CL-2020-5045_2020	5		n	N/A
+Sample1	node_6_condensed_3_leaves	5		n	N/A
+Sample1	Jiangsu_JS01_2020	5		n	N/A
+Sample1	Shanghai_SH0031_2020	5		n	N/A
+Sample1	Australia_NSW02_2020	5		n	N/A
+Sample1	node_25	5		n	N/A
+Sample1	India_1-27_2020	5		n	N/A
+Sample1	Shanghai_SH0011_2020	5		n	N/A
+Sample1	Fujian_13_2020	5		n	N/A
+Sample1	Singapore_11_2020	5		n	N/A
+Sample1	USA_WI1_2020	5		n	N/A
+Sample1	Wuhan_HBCDC-HB-05_2020	8		n	N/A
+Sample1	Shandong_IVDC-SD-001_2020	8		n	N/A
+Sample1	England_200960041_2020	8		n	N/A
+Sample1	Australia_NSW05_2020	8		n	N/A
+Sample1	node_29	8		n	N/A
+Sample1	node_31	8		n	N/A
+Sample1	node_32	8		n	N/A
+Sample1	Kuwait_KU17_2020	8		n	N/A
+Sample1	node_33	8		n	N/A
+Sample1	node_34	8		n	N/A
+Sample1	node_35	8		n	N/A
+Sample1	node_7_condensed_3_leaves	6		n	N/A
+Sample1	Jiangsu_JS02_2020	5		n	N/A
+Sample1	Shanghai_SH0008_2020	5		n	N/A
+Sample1	USA_CA5_2020	5		n	N/A
+Sample1	Wuhan_WIV02_2019	5		n	N/A
+Sample1	node_8_condensed_2_leaves	5		n	N/A
+Sample1	Singapore_8_2020	5		n	N/A
+Sample1	node_41	5		n	N/A
+Sample1	node_9_condensed_2_leaves	5		n	N/A
+Sample1	Japan_Hu_DP_Kng_19-027_2020	5		n	N/A
+Sample1	node_10_condensed_3_leaves	5		n	N/A
+Sample1	Hangzhou_ZJU-09_2020	5		n	N/A
+Sample1	Australia_VIC01_2020	5		n	N/A
+Sample1	USA_MA1_2020	5		n	N/A
+Sample1	node_45	5		n	N/A
+Sample1	node_48	6		n	N/A
+Sample1	node_49	6		n	N/A
+Sample1	Italy_SPL1_2020	6		n	N/A
+Sample1	England_20102000106_2020	7		n	N/A
+Sample1	node_51	7		n	N/A
+Sample1	node_53	7		n	N/A
+Sample1	England_200960515_2020	7		n	N/A
+Sample1	node_54	7		n	N/A
+Sample1	Netherlands_Utrecht_19_2020	5		n	N/A
+Sample1	Netherlands_Limburg_6_2020	5		n	N/A
+Sample1	Netherlands_Naarden_1364774_2020	5		n	N/A
+Sample1	node_56	5		n	N/A
+Sample1	node_57	5		n	N/A
+Sample1	Shanghai_SH0086_2020	7		n	N/A
+Sample1	node_59	7		n	N/A
+Sample1	node_11_condensed_3_leaves	7		n	N/A
+Sample1	France_GE1583_2020	11		n	N/A
+Sample1	Georgia_Tb-390_2020	11		n	N/A
+Sample1	Spain_Valencia6_2020	11		n	N/A
+Sample1	Spain_CastillayLeon201437_2020	11		n	N/A
+Sample1	node_12_condensed_6_leaves	11		n	N/A
+Sample1	Sichuan_IVDC-SC-001_2020	9		n	N/A
+Sample1	USA_CA1_2020	9		n	N/A
+Sample1	USA_IL2_2020	9		n	N/A
+Sample1	Vietnam_CM99_2020	9		n	N/A
+Sample1	node_13_condensed_3_leaves	9		n	N/A
+Sample1	Shanghai_SH0035_2020	8		n	N/A
+Sample1	Australia_QLD02_2020	8		n	N/A
+Sample1	Australia_QLD03_2020	8		n	N/A
+Sample1	Australia_VIC07_2020	8		n	N/A
+Sample1	node_6	8		n	N/A
+Sample1	node_14_condensed_6_leaves	8		n	N/A
+Sample1	Shandong_LY003_2020	7		n	N/A
+Sample1	Shandong_LY005_2020	7		n	N/A
+Sample1	node_15_condensed_3_leaves	7		n	N/A
+Sample1	node_16_condensed_2_leaves	10		n	N/A
+Sample1	Chongqing_YC01_2020	7		n	N/A
+Sample1	node_10	7		n	N/A
+Sample1	Malaysia_MKAK-CL-2020-6430_2020	7		n	N/A
+Sample1	node_17_condensed_3_leaves	7		n	N/A
+Sample1	Shanghai_SH0059_2020	7		n	N/A
+Sample1	USA_TX1_2020	7		n	N/A
+Sample1	node_14	7		n	N/A
+Sample1	Shanghai_SH0004_2020	7		n	N/A
+Sample1	Germany_BavPat3_2020	7		n	N/A
+Sample1	Shanghai_SH0005_2020	7		n	N/A
+Sample1	Yunnan_IVDC-YN-003_2020	7		n	N/A
+Sample1	USA_AZ1_2020	7		n	N/A
+Sample1	Anhui_SZ005_2020	5		n	N/A
+Sample1	Beijing_233_2020	8		n	N/A
+Sample1	node_18_condensed_3_leaves	8		n	N/A
+Sample1	Germany_NRW-04_2020	4		n	N/A
+Sample1	Germany_NRW-07_2020	4		n	N/A
+Sample1	node_21	4		n	N/A
+Sample1	Hangzhou_ZJU-06_2020	6		n	N/A
+Sample1	node_26	6		n	N/A
+Sample1	Georgia_Tb-82_2020	10		n	N/A
+Sample1	Australia_NSW09_2020	10		n	N/A
+Sample1	node_30	10		n	N/A
+Sample1	Kuwait_KU18_2020	10		n	N/A
+Sample1	Kuwait_KU12_2020	10		n	N/A
+Sample1	Australia_NSW06_2020	10		n	N/A
+Sample1	node_19_condensed_2_leaves	10		n	N/A
+Sample1	Taiwan_CGMH-CGU-04_2020	11		n	N/A
+Sample1	node_20_condensed_2_leaves	11		n	N/A
+Sample1	Canada_BC_17397_2020	9		n	N/A
+Sample1	Canada_BC_13297_2020	9		n	N/A
+Sample1	Australia_QLD09_2020	9		n	N/A
+Sample1	Australia_NSW07_2020	9		n	N/A
+Sample1	USA_NY1-PV08001_2020	9		n	N/A
+Sample1	Canada_BC_37_0-2_2020	9		n	N/A
+Sample1	Canada_BC_69243_2020	9		n	N/A
+Sample1	node_36	9		n	N/A
+Sample1	node_21_condensed_3_leaves	6		n	N/A
+Sample1	Shanghai_SH0058_2020	6		n	N/A
+Sample1	node_46	6		n	N/A
+Sample1	node_22_condensed_2_leaves	6		n	N/A
+Sample1	France_B2334_2020	8		n	N/A
+Sample1	France_B2340_2020	8		n	N/A
+Sample1	Georgia_Tb-468_2020	7		n	N/A
+Sample1	Georgia_Tb-537_2020	7		n	N/A
+Sample1	Georgia_Tb-54_2020	7		n	N/A
+Sample1	England_09c_2020	9		n	N/A
+Sample1	Brazil_ES-225_2020	9		n	N/A
+Sample1	England_20100001406_2020	9		n	N/A
+Sample1	node_52	9		n	N/A
+Sample1	Brazil_SPBR-10_2020	6		n	N/A
+Sample1	Switzerland_1000477102_2020	8		n	N/A
+Sample1	Brazil_SPBR-02_2020	8		n	N/A
+Sample1	England_200990006_2020	8		n	N/A
+Sample1	Netherlands_Utrecht_18_2020	8		n	N/A
+Sample1	node_23_condensed_3_leaves	8		n	N/A
+Sample1	node_24_condensed_2_leaves	6		n	N/A
+Sample1	Netherlands_Oss_1363500_2020	6		n	N/A
+Sample1	Netherlands_Tilburg_1363354_2020	6		n	N/A
+Sample1	Finland_FIN-25_2020	8		n	N/A
+Sample1	Belgium_DB-03023_2020	8		n	N/A
+Sample1	Denmark_SSI-102_2020	8		n	N/A
+Sample1	Denmark_SSI-02_2020	8		n	N/A
+Sample1	Belgium_BM-03012_2020	8		n	N/A
+Sample1	England_20100022706_2020	8		n	N/A
+Sample1	Denmark_SSI-04_2020	8		n	N/A
+Sample1	Taiwan_NTU03_2020	8		n	N/A
+Sample1	Finland_FIN03032020A_2020	8		n	N/A
+Sample1	Switzerland_GE4984_2020	8		n	N/A
+Sample1	Switzerland_AG0361_2020	8		n	N/A
+Sample1	Finland_FIN-266_2020	8		n	N/A
+Sample1	Luxembourg_Lux1_2020	8		n	N/A
+Sample1	Japan_SMU-0311S3_2020	8		n	N/A
+Sample1	Denmark_SSI-03_2020	8		n	N/A
+Sample1	Netherlands_Gelderland_2_2020	8		n	N/A
+Sample1	Georgia_Tb-273_2020	8		n	N/A
+Sample1	Belgium_SH-03014_2020	8		n	N/A
+Sample1	node_60	8		n	N/A
+Sample1	node_62	8		n	N/A
+Sample1	Belgium_VAG-03013_2020	8		n	N/A
+Sample1	node_64	8		n	N/A
+Sample1	node_65	8		n	N/A
+Sample1	node_66	8		n	N/A
+Sample1	node_67	8		n	N/A
+Sample1	node_68	8		n	N/A
+Sample1	node_80	8		n	N/A
+Sample1	node_81	8		n	N/A
+Sample1	node_82	8		n	N/A
+Sample1	node_25_condensed_15_leaves	8		n	N/A
+Sample1	Netherlands_Utrecht_16_2020	9		n	N/A
+Sample1	Netherlands_Utrecht_17_2020	9		n	N/A
+Sample1	node_11	9		n	N/A
+Sample1	node_12	9		n	N/A
+Sample1	Japan_TY-WK-012_2020	8		n	N/A
+Sample1	node_26_condensed_2_leaves	8		n	N/A
+Sample1	node_27_condensed_3_leaves	6		n	N/A
+Sample1	Shanghai_SH0085_2020	8		n	N/A
+Sample1	Shanghai_SH0094_2020	8		n	N/A
+Sample1	Canada_BC_25211_2020	11		n	N/A
+Sample1	Kuwait_KU09_2020	11		n	N/A
+Sample1	England_200990002_2020	11		n	N/A
+Sample1	Germany_BavPat2_2020	11		n	N/A
+Sample1	node_28_condensed_2_leaves	7		n	N/A
+Sample1	node_29_condensed_3_leaves	10		n	N/A
+Sample1	node_61	9		n	N/A
+Sample1	node_30_condensed_4_leaves	9		n	N/A
+Sample1	France_HF2174_2020	10		n	N/A
+Sample1	France_GE1977_2020	10		n	N/A
+Sample1	France_HF1684_2020	10		n	N/A
+Sample1	node_63	10		n	N/A
+Sample1	Netherlands_Utrecht_1363564_2020	12		n	N/A
+Sample1	node_31_condensed_2_leaves	12		n	N/A
+Sample1	England_20099107406_2020	9		n	N/A
+Sample1	Georgia_Tb_2020	9		n	N/A
+Sample1	France_BFC2094_2020	9		n	N/A
+Sample1	France_BFC2147_2020	9		n	N/A
+Sample1	node_32_condensed_4_leaves	9		n	N/A
+Sample1	Hungary_mbl1_2020	9		n	N/A
+Sample1	node_33_condensed_5_leaves	9		n	N/A
+Sample1	Nigeria_Lagos01_2020	11		n	N/A
+Sample1	Netherlands_Delft_1363424_2020	11		n	N/A
+Sample1	Denmark_SSI-01_2020	11		n	N/A
+Sample1	England_200990723_2020	11		n	N/A
+Sample1	Switzerland_TI2045_2020	11		n	N/A
+Sample1	Switzerland_1000477377_2020	11		n	N/A
+Sample1	Denmark_SSI-05_2020	11		n	N/A
+Sample1	Chile_Santiago-2_2020	11		n	N/A
+Sample1	Brazil_SPBR-14_2020	11		n	N/A
+Sample1	Finland_FIN-318_2020	11		n	N/A
+Sample1	Netherlands_Limburg_5_2020	11		n	N/A
+Sample1	Belgium_DBA-03032_2020	11		n	N/A
+Sample1	Switzerland_SZ1417_2020	11		n	N/A
+Sample1	Belgium_GMH-03022_2020	11		n	N/A
+Sample1	Netherlands_Utrecht_14_2020	11		n	N/A
+Sample1	Netherlands_Utrecht_1_2020	11		n	N/A
+Sample1	Finland_FIN03032020C_2020	11		n	N/A
+Sample1	Netherlands_Berlicum_1363564_2020	11		n	N/A
+Sample1	node_69	11		n	N/A
+Sample1	node_70	11		n	N/A
+Sample1	node_71	11		n	N/A
+Sample1	node_72	11		n	N/A
+Sample1	node_73	11		n	N/A
+Sample1	node_74	11		n	N/A
+Sample1	node_75	11		n	N/A
+Sample1	Belgium_BC-03016_2020	11		n	N/A
+Sample1	node_76	11		n	N/A
+Sample1	node_77	11		n	N/A
+Sample1	node_78	11		n	N/A
+Sample1	node_34_condensed_7_leaves	11		n	N/A
+Sample1	Netherlands_NoordHolland_3_2020	9		n	N/A
+Sample1	Netherlands_Flevoland_1_2020	9		n	N/A
+Sample1	NetherlandsL_Houten_1363498_2020	9		n	N/A
+Sample1	Italy_UniSR1_2020	9		n	N/A
+Sample1	France_N1620_2020	9		n	N/A
+Sample1	node_35_condensed_3_leaves	9		n	N/A
+Sample1	Georgia_Tb-673_2020	10		n	N/A
+Sample1	France_B2330_2020	10		n	N/A
+Sample1	France_PL1643_2020	10		n	N/A
+Sample1	France_HF1988_2020	10		n	N/A
+Sample1	France_B2348_2020	10		n	N/A
+Sample1	node_83	10		n	N/A
+Sample1	node_84	10		n	N/A
+Sample1	Netherlands_Haarlem_1363688_2020	10		n	N/A
+Sample1	node_36_condensed_6_leaves	10		n	N/A
+Sample1	USA_CA-CDPH-UC7_2020	12		n	N/A
+Sample1	USA_CA-CDPH-UC9_2020	12		n	N/A
+Sample1	node_37_condensed_2_leaves	11		n	N/A
+Sample1	node_38_condensed_2_leaves	11		n	N/A
+Sample1	node_39_condensed_2_leaves	11		n	N/A
+Sample1	node_40_condensed_2_leaves	13		n	N/A
+Sample1	node_41_condensed_2_leaves	12		n	N/A
+Sample1	node_42_condensed_2_leaves	12		n	N/A
+Sample1	Switzerland_1000477797_2020	12		n	N/A
+Sample1	Brazil_BA-312_2020	12		n	N/A
+Sample1	node_43_condensed_3_leaves	12		n	N/A
+Sample1	Finland_FIN-313_2020	13		n	N/A
+Sample1	Netherlands_Utrecht_15_2020	13		n	N/A
+Sample1	Switzerland_GE1422_2020	12		n	N/A
+Sample1	Netherlands_Diemen_1363454_2020	12		n	N/A
+Sample1	node_44_condensed_3_leaves	12		n	N/A
+Sample1	Switzerland_BE6651_2020	12		n	N/A
+Sample1	Netherlands_NoordHolland_2_2020	12		n	N/A
+Sample1	node_45_condensed_6_leaves	12		n	N/A
+Sample1	Switzerland_1000477757_2020	12		n	N/A
+Sample1	Brazil_SPBR-12_2020	12		n	N/A
+Sample1	Germany_Baden-Wuerttemberg-1_2020	12		n	N/A
+Sample1	node_46_condensed_16_leaves	12		n	N/A
+Sample1	Belgium_UMF-03025_2020	12		n	N/A
+Sample1	node_79	12		n	N/A
+Sample1	France_B2351_2020	11		n	N/A
+Sample1	France_B2344_2020	11		n	N/A
+Sample1	France_B2349_2020	11		n	N/A
+Sample1	France_IDF2256_2020	11		n	N/A
+Sample1	France_HF1871_2020	11		n	N/A
+Sample1	node_47_condensed_2_leaves	13		n	N/A
+Sample2	node_1	4		n	N/A
+Sample2	node_2	5		n	N/A
+Sample2	Shanghai_SH0007_2020	5		n	N/A
+Sample2	Hangzhou_ZJU-07_2020	5		n	N/A
+Sample2	Wuhan_IPBCAMS-WH-03_2019	5		n	N/A
+Sample2	Wuhan_WH01_2019	5		n	N/A
+Sample2	Wuhan_WIV07_2019	5		n	N/A
+Sample2	Shanghai_SH0093_2020	5		n	N/A
+Sample2	Wuhan_HBCDC-HB-01_2019	5		n	N/A
+Sample2	Wuhan_IPBCAMS-WH-01_2019	5		n	N/A
+Sample2	Wuhan_IVDC-HB-04_2020	5		n	N/A
+Sample2	Wuhan_IVDC-HB-05_2019	5		n	N/A
+Sample2	Wuhan_WIV05_2019	5		n	N/A
+Sample2	Sweden_01_2020	5		n	N/A
+Sample2	Taiwan_2_2020	5		n	N/A
+Sample2	USA_CA2_2020	5		n	N/A
+Sample2	Shanghai_SH0040_2020	5		n	N/A
+Sample2	Singapore_7_2020	5		n	N/A
+Sample2	Australia_VIC02_2020	5		n	N/A
+Sample2	France_IDF0515_2020	5		n	N/A
+Sample2	Hangzhou_ZJU-01_2020	5		n	N/A
+Sample2	Shanghai_SH0037_2020	5		n	N/A
+Sample2	Nepal_61_2020	5		n	N/A
+Sample2	China_WH-09_2020	5		n	N/A
+Sample2	Jiangxi_IVDC-JX-002_2020	5		n	N/A
+Sample2	Zhejiang_WZ-01_2020	5		n	N/A
+Sample2	Japan_KY-V-029_2020	5		n	N/A
+Sample2	Hangzhou_ZJU-03_2020	5		n	N/A
+Sample2	Netherlands_Utrecht_12_2020	5		n	N/A
+Sample2	Singapore_1_2020	5		n	N/A
+Sample2	Taiwan_NTU02_2020	5		n	N/A
+Sample2	England_SHEF-BFD36_2020	5		n	N/A
+Sample2	France_IDF0626_2020	5		n	N/A
+Sample2	Malaysia_MKAK-CL-2020-7554_2020	5		n	N/A
+Sample2	Cambodia_0012_2020	5		n	N/A
+Sample2	node_17	5		n	N/A
+Sample2	node_18	5		n	N/A
+Sample2	node_19	2		y	G1440A,G2891A
+Sample2	node_22	5		n	N/A
+Sample2	node_23	5		n	N/A
+Sample2	node_24	5		n	N/A
+Sample2	node_27	5		n	N/A
+Sample2	node_28	5		n	N/A
+Sample2	node_37	5		n	N/A
+Sample2	node_38	5		n	N/A
+Sample2	node_39	5		n	N/A
+Sample2	node_40	5		n	N/A
+Sample2	node_42	5		n	N/A
+Sample2	node_43	5		n	N/A
+Sample2	node_44	5		n	N/A
+Sample2	node_47	5		n	N/A
+Sample2	node_50	5		n	N/A
+Sample2	node_55	5		n	N/A
+Sample2	node_58	5		n	N/A
+Sample2	node_1_condensed_27_leaves	5		n	N/A
+Sample2	Wuhan_HBCDC-HB-06_2020	7		n	N/A
+Sample2	Wuhan_HBCDC-HB-02_2020	7		n	N/A
+Sample2	Wuhan_HBCDC-HB-04_2020	7		n	N/A
+Sample2	Shanghai_SH0075_2020	7		n	N/A
+Sample2	Shanghai_SH0010_2020	7		n	N/A
+Sample2	Tianmen_HBCDC-HB-07_2020	7		n	N/A
+Sample2	Shanghai_SH0041_2020	7		n	N/A
+Sample2	India_1-31_2020	7		n	N/A
+Sample2	Shanghai_SH0009_2020	7		n	N/A
+Sample2	Malaysia_MKAK-CL-2020-5096_2020	7		n	N/A
+Sample2	node_3	7		n	N/A
+Sample2	node_4	7		n	N/A
+Sample2	node_5	7		n	N/A
+Sample2	node_7	7		n	N/A
+Sample2	node_8	7		n	N/A
+Sample2	England_02_2020	7		n	N/A
+Sample2	node_9	7		n	N/A
+Sample2	node_13	7		n	N/A
+Sample2	node_15	7		n	N/A
+Sample2	node_16	7		n	N/A
+Sample2	node_2_condensed_10_leaves	7		n	N/A
+Sample2	USA_CA-CDPH-UC2_2020	6		n	N/A
+Sample2	USA_CA-CDPH-UC3_2020	6		n	N/A
+Sample2	node_3_condensed_2_leaves	6		n	N/A
+Sample2	node_4_condensed_2_leaves	6		n	N/A
+Sample2	Germany_NRW-10_2020	3		n	N/A
+Sample2	Germany_NRW-09_2020	3		n	N/A
+Sample2	Poland_PL_P1_2020	3		n	N/A
+Sample2	node_20	3		n	N/A
+Sample2	node_5_condensed_5_leaves	3		n	N/A
+Sample2	Malaysia_MKAK-CL-2020-5045_2020	6		n	N/A
+Sample2	node_6_condensed_3_leaves	6		n	N/A
+Sample2	Jiangsu_JS01_2020	6		n	N/A
+Sample2	Shanghai_SH0031_2020	6		n	N/A
+Sample2	Australia_NSW02_2020	6		n	N/A
+Sample2	node_25	6		n	N/A
+Sample2	India_1-27_2020	6		n	N/A
+Sample2	Shanghai_SH0011_2020	6		n	N/A
+Sample2	Fujian_13_2020	6		n	N/A
+Sample2	Singapore_11_2020	6		n	N/A
+Sample2	USA_WI1_2020	6		n	N/A
+Sample2	Wuhan_HBCDC-HB-05_2020	9		n	N/A
+Sample2	Shandong_IVDC-SD-001_2020	9		n	N/A
+Sample2	England_200960041_2020	9		n	N/A
+Sample2	Australia_NSW05_2020	9		n	N/A
+Sample2	node_29	9		n	N/A
+Sample2	node_31	9		n	N/A
+Sample2	node_32	9		n	N/A
+Sample2	Kuwait_KU17_2020	9		n	N/A
+Sample2	node_33	9		n	N/A
+Sample2	node_34	9		n	N/A
+Sample2	node_35	9		n	N/A
+Sample2	node_7_condensed_3_leaves	7		n	N/A
+Sample2	Jiangsu_JS02_2020	6		n	N/A
+Sample2	Shanghai_SH0008_2020	6		n	N/A
+Sample2	USA_CA5_2020	6		n	N/A
+Sample2	Wuhan_WIV02_2019	6		n	N/A
+Sample2	node_8_condensed_2_leaves	6		n	N/A
+Sample2	Singapore_8_2020	6		n	N/A
+Sample2	node_41	6		n	N/A
+Sample2	node_9_condensed_2_leaves	6		n	N/A
+Sample2	Japan_Hu_DP_Kng_19-027_2020	6		n	N/A
+Sample2	node_10_condensed_3_leaves	6		n	N/A
+Sample2	Hangzhou_ZJU-09_2020	6		n	N/A
+Sample2	Australia_VIC01_2020	6		n	N/A
+Sample2	USA_MA1_2020	6		n	N/A
+Sample2	node_45	6		n	N/A
+Sample2	node_48	7		n	N/A
+Sample2	node_49	7		n	N/A
+Sample2	Italy_SPL1_2020	7		n	N/A
+Sample2	England_20102000106_2020	8		n	N/A
+Sample2	node_51	8		n	N/A
+Sample2	node_53	8		n	N/A
+Sample2	England_200960515_2020	8		n	N/A
+Sample2	node_54	8		n	N/A
+Sample2	Netherlands_Utrecht_19_2020	6		n	N/A
+Sample2	Netherlands_Limburg_6_2020	6		n	N/A
+Sample2	Netherlands_Naarden_1364774_2020	6		n	N/A
+Sample2	node_56	6		n	N/A
+Sample2	node_57	6		n	N/A
+Sample2	Shanghai_SH0086_2020	8		n	N/A
+Sample2	node_59	8		n	N/A
+Sample2	node_11_condensed_3_leaves	8		n	N/A
+Sample2	France_GE1583_2020	12		n	N/A
+Sample2	Georgia_Tb-390_2020	12		n	N/A
+Sample2	Spain_Valencia6_2020	12		n	N/A
+Sample2	Spain_CastillayLeon201437_2020	12		n	N/A
+Sample2	node_12_condensed_6_leaves	12		n	N/A
+Sample2	Sichuan_IVDC-SC-001_2020	10		n	N/A
+Sample2	USA_CA1_2020	10		n	N/A
+Sample2	USA_IL2_2020	10		n	N/A
+Sample2	Vietnam_CM99_2020	10		n	N/A
+Sample2	node_13_condensed_3_leaves	10		n	N/A
+Sample2	Shanghai_SH0035_2020	9		n	N/A
+Sample2	Australia_QLD02_2020	9		n	N/A
+Sample2	Australia_QLD03_2020	9		n	N/A
+Sample2	Australia_VIC07_2020	9		n	N/A
+Sample2	node_6	9		n	N/A
+Sample2	node_14_condensed_6_leaves	9		n	N/A
+Sample2	Shandong_LY003_2020	8		n	N/A
+Sample2	Shandong_LY005_2020	8		n	N/A
+Sample2	node_15_condensed_3_leaves	8		n	N/A
+Sample2	node_16_condensed_2_leaves	11		n	N/A
+Sample2	Chongqing_YC01_2020	8		n	N/A
+Sample2	node_10	8		n	N/A
+Sample2	Malaysia_MKAK-CL-2020-6430_2020	8		n	N/A
+Sample2	node_17_condensed_3_leaves	8		n	N/A
+Sample2	Shanghai_SH0059_2020	8		n	N/A
+Sample2	USA_TX1_2020	8		n	N/A
+Sample2	node_14	8		n	N/A
+Sample2	Shanghai_SH0004_2020	8		n	N/A
+Sample2	Germany_BavPat3_2020	8		n	N/A
+Sample2	Shanghai_SH0005_2020	8		n	N/A
+Sample2	Yunnan_IVDC-YN-003_2020	8		n	N/A
+Sample2	USA_AZ1_2020	8		n	N/A
+Sample2	Anhui_SZ005_2020	6		n	N/A
+Sample2	Beijing_233_2020	9		n	N/A
+Sample2	node_18_condensed_3_leaves	9		n	N/A
+Sample2	Germany_NRW-04_2020	5		n	N/A
+Sample2	Germany_NRW-07_2020	5		n	N/A
+Sample2	node_21	5		n	N/A
+Sample2	Hangzhou_ZJU-06_2020	7		n	N/A
+Sample2	node_26	7		n	N/A
+Sample2	Georgia_Tb-82_2020	11		n	N/A
+Sample2	Australia_NSW09_2020	11		n	N/A
+Sample2	node_30	11		n	N/A
+Sample2	Kuwait_KU18_2020	11		n	N/A
+Sample2	Kuwait_KU12_2020	11		n	N/A
+Sample2	Australia_NSW06_2020	11		n	N/A
+Sample2	node_19_condensed_2_leaves	11		n	N/A
+Sample2	Taiwan_CGMH-CGU-04_2020	12		n	N/A
+Sample2	node_20_condensed_2_leaves	12		n	N/A
+Sample2	Canada_BC_17397_2020	10		n	N/A
+Sample2	Canada_BC_13297_2020	10		n	N/A
+Sample2	Australia_QLD09_2020	10		n	N/A
+Sample2	Australia_NSW07_2020	10		n	N/A
+Sample2	USA_NY1-PV08001_2020	10		n	N/A
+Sample2	Canada_BC_37_0-2_2020	10		n	N/A
+Sample2	Canada_BC_69243_2020	10		n	N/A
+Sample2	node_36	10		n	N/A
+Sample2	node_21_condensed_3_leaves	7		n	N/A
+Sample2	Shanghai_SH0058_2020	7		n	N/A
+Sample2	node_46	7		n	N/A
+Sample2	node_22_condensed_2_leaves	7		n	N/A
+Sample2	France_B2334_2020	9		n	N/A
+Sample2	France_B2340_2020	9		n	N/A
+Sample2	Georgia_Tb-468_2020	8		n	N/A
+Sample2	Georgia_Tb-537_2020	8		n	N/A
+Sample2	Georgia_Tb-54_2020	8		n	N/A
+Sample2	England_09c_2020	10		n	N/A
+Sample2	Brazil_ES-225_2020	10		n	N/A
+Sample2	England_20100001406_2020	10		n	N/A
+Sample2	node_52	10		n	N/A
+Sample2	Brazil_SPBR-10_2020	7		n	N/A
+Sample2	Switzerland_1000477102_2020	9		n	N/A
+Sample2	Brazil_SPBR-02_2020	9		n	N/A
+Sample2	England_200990006_2020	9		n	N/A
+Sample2	Netherlands_Utrecht_18_2020	9		n	N/A
+Sample2	node_23_condensed_3_leaves	9		n	N/A
+Sample2	node_24_condensed_2_leaves	7		n	N/A
+Sample2	Netherlands_Oss_1363500_2020	7		n	N/A
+Sample2	Netherlands_Tilburg_1363354_2020	7		n	N/A
+Sample2	Finland_FIN-25_2020	9		n	N/A
+Sample2	Belgium_DB-03023_2020	9		n	N/A
+Sample2	Denmark_SSI-102_2020	9		n	N/A
+Sample2	Denmark_SSI-02_2020	9		n	N/A
+Sample2	Belgium_BM-03012_2020	9		n	N/A
+Sample2	England_20100022706_2020	9		n	N/A
+Sample2	Denmark_SSI-04_2020	9		n	N/A
+Sample2	Taiwan_NTU03_2020	9		n	N/A
+Sample2	Finland_FIN03032020A_2020	9		n	N/A
+Sample2	Switzerland_GE4984_2020	9		n	N/A
+Sample2	Switzerland_AG0361_2020	9		n	N/A
+Sample2	Finland_FIN-266_2020	9		n	N/A
+Sample2	Luxembourg_Lux1_2020	9		n	N/A
+Sample2	Japan_SMU-0311S3_2020	9		n	N/A
+Sample2	Denmark_SSI-03_2020	9		n	N/A
+Sample2	Netherlands_Gelderland_2_2020	9		n	N/A
+Sample2	Georgia_Tb-273_2020	9		n	N/A
+Sample2	Belgium_SH-03014_2020	9		n	N/A
+Sample2	node_60	9		n	N/A
+Sample2	node_62	9		n	N/A
+Sample2	Belgium_VAG-03013_2020	9		n	N/A
+Sample2	node_64	9		n	N/A
+Sample2	node_65	9		n	N/A
+Sample2	node_66	9		n	N/A
+Sample2	node_67	9		n	N/A
+Sample2	node_68	9		n	N/A
+Sample2	node_80	9		n	N/A
+Sample2	node_81	9		n	N/A
+Sample2	node_82	9		n	N/A
+Sample2	node_25_condensed_15_leaves	9		n	N/A
+Sample2	Netherlands_Utrecht_16_2020	10		n	N/A
+Sample2	Netherlands_Utrecht_17_2020	10		n	N/A
+Sample2	node_11	10		n	N/A
+Sample2	node_12	10		n	N/A
+Sample2	Japan_TY-WK-012_2020	9		n	N/A
+Sample2	node_26_condensed_2_leaves	9		n	N/A
+Sample2	node_27_condensed_3_leaves	7		n	N/A
+Sample2	Shanghai_SH0085_2020	9		n	N/A
+Sample2	Shanghai_SH0094_2020	9		n	N/A
+Sample2	Canada_BC_25211_2020	12		n	N/A
+Sample2	Kuwait_KU09_2020	12		n	N/A
+Sample2	England_200990002_2020	12		n	N/A
+Sample2	Germany_BavPat2_2020	12		n	N/A
+Sample2	node_28_condensed_2_leaves	8		n	N/A
+Sample2	node_29_condensed_3_leaves	11		n	N/A
+Sample2	node_61	10		n	N/A
+Sample2	node_30_condensed_4_leaves	10		n	N/A
+Sample2	France_HF2174_2020	11		n	N/A
+Sample2	France_GE1977_2020	11		n	N/A
+Sample2	France_HF1684_2020	11		n	N/A
+Sample2	node_63	11		n	N/A
+Sample2	Netherlands_Utrecht_1363564_2020	13		n	N/A
+Sample2	node_31_condensed_2_leaves	13		n	N/A
+Sample2	England_20099107406_2020	10		n	N/A
+Sample2	Georgia_Tb_2020	10		n	N/A
+Sample2	France_BFC2094_2020	10		n	N/A
+Sample2	France_BFC2147_2020	10		n	N/A
+Sample2	node_32_condensed_4_leaves	10		n	N/A
+Sample2	Hungary_mbl1_2020	10		n	N/A
+Sample2	node_33_condensed_5_leaves	10		n	N/A
+Sample2	Nigeria_Lagos01_2020	12		n	N/A
+Sample2	Netherlands_Delft_1363424_2020	12		n	N/A
+Sample2	Denmark_SSI-01_2020	12		n	N/A
+Sample2	England_200990723_2020	12		n	N/A
+Sample2	Switzerland_TI2045_2020	12		n	N/A
+Sample2	Switzerland_1000477377_2020	12		n	N/A
+Sample2	Denmark_SSI-05_2020	12		n	N/A
+Sample2	Chile_Santiago-2_2020	12		n	N/A
+Sample2	Brazil_SPBR-14_2020	12		n	N/A
+Sample2	Finland_FIN-318_2020	12		n	N/A
+Sample2	Netherlands_Limburg_5_2020	12		n	N/A
+Sample2	Belgium_DBA-03032_2020	12		n	N/A
+Sample2	Switzerland_SZ1417_2020	12		n	N/A
+Sample2	Belgium_GMH-03022_2020	12		n	N/A
+Sample2	Netherlands_Utrecht_14_2020	12		n	N/A
+Sample2	Netherlands_Utrecht_1_2020	12		n	N/A
+Sample2	Finland_FIN03032020C_2020	12		n	N/A
+Sample2	Netherlands_Berlicum_1363564_2020	12		n	N/A
+Sample2	node_69	12		n	N/A
+Sample2	node_70	12		n	N/A
+Sample2	node_71	12		n	N/A
+Sample2	node_72	12		n	N/A
+Sample2	node_73	12		n	N/A
+Sample2	node_74	12		n	N/A
+Sample2	node_75	12		n	N/A
+Sample2	Belgium_BC-03016_2020	12		n	N/A
+Sample2	node_76	12		n	N/A
+Sample2	node_77	12		n	N/A
+Sample2	node_78	12		n	N/A
+Sample2	node_34_condensed_7_leaves	12		n	N/A
+Sample2	Netherlands_NoordHolland_3_2020	10		n	N/A
+Sample2	Netherlands_Flevoland_1_2020	10		n	N/A
+Sample2	NetherlandsL_Houten_1363498_2020	10		n	N/A
+Sample2	Italy_UniSR1_2020	10		n	N/A
+Sample2	France_N1620_2020	10		n	N/A
+Sample2	node_35_condensed_3_leaves	10		n	N/A
+Sample2	Georgia_Tb-673_2020	11		n	N/A
+Sample2	France_B2330_2020	11		n	N/A
+Sample2	France_PL1643_2020	11		n	N/A
+Sample2	France_HF1988_2020	11		n	N/A
+Sample2	France_B2348_2020	11		n	N/A
+Sample2	node_83	11		n	N/A
+Sample2	node_84	11		n	N/A
+Sample2	Netherlands_Haarlem_1363688_2020	11		n	N/A
+Sample2	node_36_condensed_6_leaves	11		n	N/A
+Sample2	USA_CA-CDPH-UC7_2020	13		n	N/A
+Sample2	USA_CA-CDPH-UC9_2020	13		n	N/A
+Sample2	node_37_condensed_2_leaves	12		n	N/A
+Sample2	node_38_condensed_2_leaves	12		n	N/A
+Sample2	node_39_condensed_2_leaves	12		n	N/A
+Sample2	node_40_condensed_2_leaves	14		n	N/A
+Sample2	node_41_condensed_2_leaves	13		n	N/A
+Sample2	node_42_condensed_2_leaves	13		n	N/A
+Sample2	Switzerland_1000477797_2020	13		n	N/A
+Sample2	Brazil_BA-312_2020	13		n	N/A
+Sample2	node_43_condensed_3_leaves	13		n	N/A
+Sample2	Finland_FIN-313_2020	14		n	N/A
+Sample2	Netherlands_Utrecht_15_2020	14		n	N/A
+Sample2	Switzerland_GE1422_2020	13		n	N/A
+Sample2	Netherlands_Diemen_1363454_2020	13		n	N/A
+Sample2	node_44_condensed_3_leaves	13		n	N/A
+Sample2	Switzerland_BE6651_2020	13		n	N/A
+Sample2	Netherlands_NoordHolland_2_2020	13		n	N/A
+Sample2	node_45_condensed_6_leaves	13		n	N/A
+Sample2	Switzerland_1000477757_2020	13		n	N/A
+Sample2	Brazil_SPBR-12_2020	13		n	N/A
+Sample2	Germany_Baden-Wuerttemberg-1_2020	13		n	N/A
+Sample2	node_46_condensed_16_leaves	13		n	N/A
+Sample2	Belgium_UMF-03025_2020	13		n	N/A
+Sample2	node_79	13		n	N/A
+Sample2	France_B2351_2020	12		n	N/A
+Sample2	France_B2344_2020	12		n	N/A
+Sample2	France_B2349_2020	12		n	N/A
+Sample2	France_IDF2256_2020	12		n	N/A
+Sample2	France_HF1871_2020	12		n	N/A
+Sample2	node_47_condensed_2_leaves	14		n	N/A
+Sample3	node_1	4		n	N/A
+Sample3	node_2	5		n	N/A
+Sample3	Shanghai_SH0007_2020	5		n	N/A
+Sample3	Hangzhou_ZJU-07_2020	5		n	N/A
+Sample3	Wuhan_IPBCAMS-WH-03_2019	5		n	N/A
+Sample3	Wuhan_WH01_2019	5		n	N/A
+Sample3	Wuhan_WIV07_2019	5		n	N/A
+Sample3	Shanghai_SH0093_2020	5		n	N/A
+Sample3	Wuhan_HBCDC-HB-01_2019	5		n	N/A
+Sample3	Wuhan_IPBCAMS-WH-01_2019	5		n	N/A
+Sample3	Wuhan_IVDC-HB-04_2020	5		n	N/A
+Sample3	Wuhan_IVDC-HB-05_2019	5		n	N/A
+Sample3	Wuhan_WIV05_2019	5		n	N/A
+Sample3	Sweden_01_2020	5		n	N/A
+Sample3	Taiwan_2_2020	5		n	N/A
+Sample3	USA_CA2_2020	5		n	N/A
+Sample3	Shanghai_SH0040_2020	5		n	N/A
+Sample3	Singapore_7_2020	5		n	N/A
+Sample3	Australia_VIC02_2020	5		n	N/A
+Sample3	France_IDF0515_2020	5		n	N/A
+Sample3	Hangzhou_ZJU-01_2020	5		n	N/A
+Sample3	Shanghai_SH0037_2020	5		n	N/A
+Sample3	Nepal_61_2020	5		n	N/A
+Sample3	China_WH-09_2020	5		n	N/A
+Sample3	Jiangxi_IVDC-JX-002_2020	5		n	N/A
+Sample3	Zhejiang_WZ-01_2020	5		n	N/A
+Sample3	Japan_KY-V-029_2020	5		n	N/A
+Sample3	Hangzhou_ZJU-03_2020	5		n	N/A
+Sample3	Netherlands_Utrecht_12_2020	5		n	N/A
+Sample3	Singapore_1_2020	5		n	N/A
+Sample3	Taiwan_NTU02_2020	5		n	N/A
+Sample3	England_SHEF-BFD36_2020	5		n	N/A
+Sample3	France_IDF0626_2020	5		n	N/A
+Sample3	Malaysia_MKAK-CL-2020-7554_2020	5		n	N/A
+Sample3	Cambodia_0012_2020	5		n	N/A
+Sample3	node_17	5		n	N/A
+Sample3	node_18	5		n	N/A
+Sample3	node_19	2		y	G1440A,G2891A
+Sample3	node_22	5		n	N/A
+Sample3	node_23	5		n	N/A
+Sample3	node_24	5		n	N/A
+Sample3	node_27	5		n	N/A
+Sample3	node_28	5		n	N/A
+Sample3	node_37	5		n	N/A
+Sample3	node_38	5		n	N/A
+Sample3	node_39	5		n	N/A
+Sample3	node_40	5		n	N/A
+Sample3	node_42	5		n	N/A
+Sample3	node_43	5		n	N/A
+Sample3	node_44	5		n	N/A
+Sample3	node_47	5		n	N/A
+Sample3	node_50	5		n	N/A
+Sample3	node_55	5		n	N/A
+Sample3	node_58	5		n	N/A
+Sample3	node_1_condensed_27_leaves	5		n	N/A
+Sample3	Wuhan_HBCDC-HB-06_2020	7		n	N/A
+Sample3	Wuhan_HBCDC-HB-02_2020	7		n	N/A
+Sample3	Wuhan_HBCDC-HB-04_2020	7		n	N/A
+Sample3	Shanghai_SH0075_2020	7		n	N/A
+Sample3	Shanghai_SH0010_2020	7		n	N/A
+Sample3	Tianmen_HBCDC-HB-07_2020	7		n	N/A
+Sample3	Shanghai_SH0041_2020	7		n	N/A
+Sample3	India_1-31_2020	7		n	N/A
+Sample3	Shanghai_SH0009_2020	7		n	N/A
+Sample3	Malaysia_MKAK-CL-2020-5096_2020	7		n	N/A
+Sample3	node_3	7		n	N/A
+Sample3	node_4	7		n	N/A
+Sample3	node_5	7		n	N/A
+Sample3	node_7	7		n	N/A
+Sample3	node_8	7		n	N/A
+Sample3	England_02_2020	7		n	N/A
+Sample3	node_9	7		n	N/A
+Sample3	node_13	7		n	N/A
+Sample3	node_15	7		n	N/A
+Sample3	node_16	7		n	N/A
+Sample3	node_2_condensed_10_leaves	7		n	N/A
+Sample3	USA_CA-CDPH-UC2_2020	6		n	N/A
+Sample3	USA_CA-CDPH-UC3_2020	6		n	N/A
+Sample3	node_3_condensed_2_leaves	6		n	N/A
+Sample3	node_4_condensed_2_leaves	6		n	N/A
+Sample3	Germany_NRW-10_2020	3		n	N/A
+Sample3	Germany_NRW-09_2020	3		n	N/A
+Sample3	Poland_PL_P1_2020	3		n	N/A
+Sample3	node_20	3		n	N/A
+Sample3	node_5_condensed_5_leaves	3		n	N/A
+Sample3	Malaysia_MKAK-CL-2020-5045_2020	6		n	N/A
+Sample3	node_6_condensed_3_leaves	6		n	N/A
+Sample3	Jiangsu_JS01_2020	6		n	N/A
+Sample3	Shanghai_SH0031_2020	6		n	N/A
+Sample3	Australia_NSW02_2020	6		n	N/A
+Sample3	node_25	6		n	N/A
+Sample3	India_1-27_2020	6		n	N/A
+Sample3	Shanghai_SH0011_2020	6		n	N/A
+Sample3	Fujian_13_2020	6		n	N/A
+Sample3	Singapore_11_2020	6		n	N/A
+Sample3	USA_WI1_2020	6		n	N/A
+Sample3	Wuhan_HBCDC-HB-05_2020	9		n	N/A
+Sample3	Shandong_IVDC-SD-001_2020	9		n	N/A
+Sample3	England_200960041_2020	9		n	N/A
+Sample3	Australia_NSW05_2020	9		n	N/A
+Sample3	node_29	9		n	N/A
+Sample3	node_31	9		n	N/A
+Sample3	node_32	9		n	N/A
+Sample3	Kuwait_KU17_2020	9		n	N/A
+Sample3	node_33	9		n	N/A
+Sample3	node_34	9		n	N/A
+Sample3	node_35	9		n	N/A
+Sample3	node_7_condensed_3_leaves	7		n	N/A
+Sample3	Jiangsu_JS02_2020	6		n	N/A
+Sample3	Shanghai_SH0008_2020	6		n	N/A
+Sample3	USA_CA5_2020	6		n	N/A
+Sample3	Wuhan_WIV02_2019	6		n	N/A
+Sample3	node_8_condensed_2_leaves	6		n	N/A
+Sample3	Singapore_8_2020	6		n	N/A
+Sample3	node_41	6		n	N/A
+Sample3	node_9_condensed_2_leaves	6		n	N/A
+Sample3	Japan_Hu_DP_Kng_19-027_2020	6		n	N/A
+Sample3	node_10_condensed_3_leaves	6		n	N/A
+Sample3	Hangzhou_ZJU-09_2020	6		n	N/A
+Sample3	Australia_VIC01_2020	6		n	N/A
+Sample3	USA_MA1_2020	6		n	N/A
+Sample3	node_45	6		n	N/A
+Sample3	node_48	7		n	N/A
+Sample3	node_49	7		n	N/A
+Sample3	Italy_SPL1_2020	7		n	N/A
+Sample3	England_20102000106_2020	8		n	N/A
+Sample3	node_51	8		n	N/A
+Sample3	node_53	8		n	N/A
+Sample3	England_200960515_2020	8		n	N/A
+Sample3	node_54	8		n	N/A
+Sample3	Netherlands_Utrecht_19_2020	6		n	N/A
+Sample3	Netherlands_Limburg_6_2020	6		n	N/A
+Sample3	Netherlands_Naarden_1364774_2020	6		n	N/A
+Sample3	node_56	6		n	N/A
+Sample3	node_57	6		n	N/A
+Sample3	Shanghai_SH0086_2020	8		n	N/A
+Sample3	node_59	8		n	N/A
+Sample3	node_11_condensed_3_leaves	8		n	N/A
+Sample3	France_GE1583_2020	12		n	N/A
+Sample3	Georgia_Tb-390_2020	12		n	N/A
+Sample3	Spain_Valencia6_2020	12		n	N/A
+Sample3	Spain_CastillayLeon201437_2020	12		n	N/A
+Sample3	node_12_condensed_6_leaves	12		n	N/A
+Sample3	Sichuan_IVDC-SC-001_2020	10		n	N/A
+Sample3	USA_CA1_2020	10		n	N/A
+Sample3	USA_IL2_2020	10		n	N/A
+Sample3	Vietnam_CM99_2020	10		n	N/A
+Sample3	node_13_condensed_3_leaves	10		n	N/A
+Sample3	Shanghai_SH0035_2020	9		n	N/A
+Sample3	Australia_QLD02_2020	9		n	N/A
+Sample3	Australia_QLD03_2020	9		n	N/A
+Sample3	Australia_VIC07_2020	9		n	N/A
+Sample3	node_6	9		n	N/A
+Sample3	node_14_condensed_6_leaves	9		n	N/A
+Sample3	Shandong_LY003_2020	8		n	N/A
+Sample3	Shandong_LY005_2020	8		n	N/A
+Sample3	node_15_condensed_3_leaves	8		n	N/A
+Sample3	node_16_condensed_2_leaves	11		n	N/A
+Sample3	Chongqing_YC01_2020	8		n	N/A
+Sample3	node_10	8		n	N/A
+Sample3	Malaysia_MKAK-CL-2020-6430_2020	8		n	N/A
+Sample3	node_17_condensed_3_leaves	8		n	N/A
+Sample3	Shanghai_SH0059_2020	8		n	N/A
+Sample3	USA_TX1_2020	8		n	N/A
+Sample3	node_14	8		n	N/A
+Sample3	Shanghai_SH0004_2020	8		n	N/A
+Sample3	Germany_BavPat3_2020	8		n	N/A
+Sample3	Shanghai_SH0005_2020	8		n	N/A
+Sample3	Yunnan_IVDC-YN-003_2020	8		n	N/A
+Sample3	USA_AZ1_2020	8		n	N/A
+Sample3	Anhui_SZ005_2020	6		n	N/A
+Sample3	Beijing_233_2020	9		n	N/A
+Sample3	node_18_condensed_3_leaves	9		n	N/A
+Sample3	Germany_NRW-04_2020	5		n	N/A
+Sample3	Germany_NRW-07_2020	5		n	N/A
+Sample3	node_21	5		n	N/A
+Sample3	Hangzhou_ZJU-06_2020	7		n	N/A
+Sample3	node_26	7		n	N/A
+Sample3	Georgia_Tb-82_2020	11		n	N/A
+Sample3	Australia_NSW09_2020	11		n	N/A
+Sample3	node_30	11		n	N/A
+Sample3	Kuwait_KU18_2020	11		n	N/A
+Sample3	Kuwait_KU12_2020	11		n	N/A
+Sample3	Australia_NSW06_2020	11		n	N/A
+Sample3	node_19_condensed_2_leaves	11		n	N/A
+Sample3	Taiwan_CGMH-CGU-04_2020	12		n	N/A
+Sample3	node_20_condensed_2_leaves	12		n	N/A
+Sample3	Canada_BC_17397_2020	10		n	N/A
+Sample3	Canada_BC_13297_2020	10		n	N/A
+Sample3	Australia_QLD09_2020	10		n	N/A
+Sample3	Australia_NSW07_2020	10		n	N/A
+Sample3	USA_NY1-PV08001_2020	10		n	N/A
+Sample3	Canada_BC_37_0-2_2020	10		n	N/A
+Sample3	Canada_BC_69243_2020	10		n	N/A
+Sample3	node_36	10		n	N/A
+Sample3	node_21_condensed_3_leaves	7		n	N/A
+Sample3	Shanghai_SH0058_2020	7		n	N/A
+Sample3	node_46	7		n	N/A
+Sample3	node_22_condensed_2_leaves	7		n	N/A
+Sample3	France_B2334_2020	9		n	N/A
+Sample3	France_B2340_2020	9		n	N/A
+Sample3	Georgia_Tb-468_2020	8		n	N/A
+Sample3	Georgia_Tb-537_2020	8		n	N/A
+Sample3	Georgia_Tb-54_2020	8		n	N/A
+Sample3	England_09c_2020	10		n	N/A
+Sample3	Brazil_ES-225_2020	10		n	N/A
+Sample3	England_20100001406_2020	10		n	N/A
+Sample3	node_52	10		n	N/A
+Sample3	Brazil_SPBR-10_2020	7		n	N/A
+Sample3	Switzerland_1000477102_2020	9		n	N/A
+Sample3	Brazil_SPBR-02_2020	9		n	N/A
+Sample3	England_200990006_2020	9		n	N/A
+Sample3	Netherlands_Utrecht_18_2020	9		n	N/A
+Sample3	node_23_condensed_3_leaves	9		n	N/A
+Sample3	node_24_condensed_2_leaves	7		n	N/A
+Sample3	Netherlands_Oss_1363500_2020	7		n	N/A
+Sample3	Netherlands_Tilburg_1363354_2020	7		n	N/A
+Sample3	Finland_FIN-25_2020	9		n	N/A
+Sample3	Belgium_DB-03023_2020	9		n	N/A
+Sample3	Denmark_SSI-102_2020	9		n	N/A
+Sample3	Denmark_SSI-02_2020	9		n	N/A
+Sample3	Belgium_BM-03012_2020	9		n	N/A
+Sample3	England_20100022706_2020	9		n	N/A
+Sample3	Denmark_SSI-04_2020	9		n	N/A
+Sample3	Taiwan_NTU03_2020	9		n	N/A
+Sample3	Finland_FIN03032020A_2020	9		n	N/A
+Sample3	Switzerland_GE4984_2020	9		n	N/A
+Sample3	Switzerland_AG0361_2020	9		n	N/A
+Sample3	Finland_FIN-266_2020	9		n	N/A
+Sample3	Luxembourg_Lux1_2020	9		n	N/A
+Sample3	Japan_SMU-0311S3_2020	9		n	N/A
+Sample3	Denmark_SSI-03_2020	9		n	N/A
+Sample3	Netherlands_Gelderland_2_2020	9		n	N/A
+Sample3	Georgia_Tb-273_2020	9		n	N/A
+Sample3	Belgium_SH-03014_2020	9		n	N/A
+Sample3	node_60	9		n	N/A
+Sample3	node_62	9		n	N/A
+Sample3	Belgium_VAG-03013_2020	9		n	N/A
+Sample3	node_64	9		n	N/A
+Sample3	node_65	9		n	N/A
+Sample3	node_66	9		n	N/A
+Sample3	node_67	9		n	N/A
+Sample3	node_68	9		n	N/A
+Sample3	node_80	9		n	N/A
+Sample3	node_81	9		n	N/A
+Sample3	node_82	9		n	N/A
+Sample3	node_25_condensed_15_leaves	9		n	N/A
+Sample3	Netherlands_Utrecht_16_2020	10		n	N/A
+Sample3	Netherlands_Utrecht_17_2020	10		n	N/A
+Sample3	node_11	10		n	N/A
+Sample3	node_12	10		n	N/A
+Sample3	Japan_TY-WK-012_2020	9		n	N/A
+Sample3	node_26_condensed_2_leaves	9		n	N/A
+Sample3	node_27_condensed_3_leaves	7		n	N/A
+Sample3	Shanghai_SH0085_2020	9		n	N/A
+Sample3	Shanghai_SH0094_2020	9		n	N/A
+Sample3	Canada_BC_25211_2020	12		n	N/A
+Sample3	Kuwait_KU09_2020	12		n	N/A
+Sample3	England_200990002_2020	12		n	N/A
+Sample3	Germany_BavPat2_2020	12		n	N/A
+Sample3	node_28_condensed_2_leaves	8		n	N/A
+Sample3	node_29_condensed_3_leaves	11		n	N/A
+Sample3	node_61	10		n	N/A
+Sample3	node_30_condensed_4_leaves	10		n	N/A
+Sample3	France_HF2174_2020	11		n	N/A
+Sample3	France_GE1977_2020	11		n	N/A
+Sample3	France_HF1684_2020	11		n	N/A
+Sample3	node_63	11		n	N/A
+Sample3	Netherlands_Utrecht_1363564_2020	13		n	N/A
+Sample3	node_31_condensed_2_leaves	13		n	N/A
+Sample3	England_20099107406_2020	10		n	N/A
+Sample3	Georgia_Tb_2020	10		n	N/A
+Sample3	France_BFC2094_2020	10		n	N/A
+Sample3	France_BFC2147_2020	10		n	N/A
+Sample3	node_32_condensed_4_leaves	10		n	N/A
+Sample3	Hungary_mbl1_2020	10		n	N/A
+Sample3	node_33_condensed_5_leaves	10		n	N/A
+Sample3	Nigeria_Lagos01_2020	12		n	N/A
+Sample3	Netherlands_Delft_1363424_2020	12		n	N/A
+Sample3	Denmark_SSI-01_2020	12		n	N/A
+Sample3	England_200990723_2020	12		n	N/A
+Sample3	Switzerland_TI2045_2020	12		n	N/A
+Sample3	Switzerland_1000477377_2020	12		n	N/A
+Sample3	Denmark_SSI-05_2020	12		n	N/A
+Sample3	Chile_Santiago-2_2020	12		n	N/A
+Sample3	Brazil_SPBR-14_2020	12		n	N/A
+Sample3	Finland_FIN-318_2020	12		n	N/A
+Sample3	Netherlands_Limburg_5_2020	12		n	N/A
+Sample3	Belgium_DBA-03032_2020	12		n	N/A
+Sample3	Switzerland_SZ1417_2020	12		n	N/A
+Sample3	Belgium_GMH-03022_2020	12		n	N/A
+Sample3	Netherlands_Utrecht_14_2020	12		n	N/A
+Sample3	Netherlands_Utrecht_1_2020	12		n	N/A
+Sample3	Finland_FIN03032020C_2020	12		n	N/A
+Sample3	Netherlands_Berlicum_1363564_2020	12		n	N/A
+Sample3	node_69	12		n	N/A
+Sample3	node_70	12		n	N/A
+Sample3	node_71	12		n	N/A
+Sample3	node_72	12		n	N/A
+Sample3	node_73	12		n	N/A
+Sample3	node_74	12		n	N/A
+Sample3	node_75	12		n	N/A
+Sample3	Belgium_BC-03016_2020	12		n	N/A
+Sample3	node_76	12		n	N/A
+Sample3	node_77	12		n	N/A
+Sample3	node_78	12		n	N/A
+Sample3	node_34_condensed_7_leaves	12		n	N/A
+Sample3	Netherlands_NoordHolland_3_2020	10		n	N/A
+Sample3	Netherlands_Flevoland_1_2020	10		n	N/A
+Sample3	NetherlandsL_Houten_1363498_2020	10		n	N/A
+Sample3	Italy_UniSR1_2020	10		n	N/A
+Sample3	France_N1620_2020	10		n	N/A
+Sample3	node_35_condensed_3_leaves	10		n	N/A
+Sample3	Georgia_Tb-673_2020	11		n	N/A
+Sample3	France_B2330_2020	11		n	N/A
+Sample3	France_PL1643_2020	11		n	N/A
+Sample3	France_HF1988_2020	11		n	N/A
+Sample3	France_B2348_2020	11		n	N/A
+Sample3	node_83	11		n	N/A
+Sample3	node_84	11		n	N/A
+Sample3	Netherlands_Haarlem_1363688_2020	11		n	N/A
+Sample3	node_36_condensed_6_leaves	11		n	N/A
+Sample3	USA_CA-CDPH-UC7_2020	13		n	N/A
+Sample3	USA_CA-CDPH-UC9_2020	13		n	N/A
+Sample3	node_37_condensed_2_leaves	12		n	N/A
+Sample3	node_38_condensed_2_leaves	12		n	N/A
+Sample3	node_39_condensed_2_leaves	12		n	N/A
+Sample3	node_40_condensed_2_leaves	14		n	N/A
+Sample3	node_41_condensed_2_leaves	13		n	N/A
+Sample3	node_42_condensed_2_leaves	13		n	N/A
+Sample3	Switzerland_1000477797_2020	13		n	N/A
+Sample3	Brazil_BA-312_2020	13		n	N/A
+Sample3	node_43_condensed_3_leaves	13		n	N/A
+Sample3	Finland_FIN-313_2020	14		n	N/A
+Sample3	Netherlands_Utrecht_15_2020	14		n	N/A
+Sample3	Switzerland_GE1422_2020	13		n	N/A
+Sample3	Netherlands_Diemen_1363454_2020	13		n	N/A
+Sample3	node_44_condensed_3_leaves	13		n	N/A
+Sample3	Switzerland_BE6651_2020	13		n	N/A
+Sample3	Netherlands_NoordHolland_2_2020	13		n	N/A
+Sample3	node_45_condensed_6_leaves	13		n	N/A
+Sample3	Switzerland_1000477757_2020	13		n	N/A
+Sample3	Brazil_SPBR-12_2020	13		n	N/A
+Sample3	Germany_Baden-Wuerttemberg-1_2020	13		n	N/A
+Sample3	node_46_condensed_16_leaves	13		n	N/A
+Sample3	Belgium_UMF-03025_2020	13		n	N/A
+Sample3	node_79	13		n	N/A
+Sample3	France_B2351_2020	12		n	N/A
+Sample3	France_B2344_2020	12		n	N/A
+Sample3	France_B2349_2020	12		n	N/A
+Sample3	France_IDF2256_2020	12		n	N/A
+Sample3	France_HF1871_2020	12		n	N/A
+Sample3	node_47_condensed_2_leaves	14		n	N/A
+Sample4	node_1	5		n	N/A
+Sample4	node_2	6		n	N/A
+Sample4	Shanghai_SH0007_2020	6		n	N/A
+Sample4	Hangzhou_ZJU-07_2020	6		n	N/A
+Sample4	Wuhan_IPBCAMS-WH-03_2019	6		n	N/A
+Sample4	Wuhan_WH01_2019	6		n	N/A
+Sample4	Wuhan_WIV07_2019	6		n	N/A
+Sample4	Shanghai_SH0093_2020	6		n	N/A
+Sample4	Wuhan_HBCDC-HB-01_2019	6		n	N/A
+Sample4	Wuhan_IPBCAMS-WH-01_2019	6		n	N/A
+Sample4	Wuhan_IVDC-HB-04_2020	6		n	N/A
+Sample4	Wuhan_IVDC-HB-05_2019	6		n	N/A
+Sample4	Wuhan_WIV05_2019	6		n	N/A
+Sample4	Sweden_01_2020	6		n	N/A
+Sample4	Taiwan_2_2020	6		n	N/A
+Sample4	USA_CA2_2020	6		n	N/A
+Sample4	Shanghai_SH0040_2020	6		n	N/A
+Sample4	Singapore_7_2020	6		n	N/A
+Sample4	Australia_VIC02_2020	6		n	N/A
+Sample4	France_IDF0515_2020	6		n	N/A
+Sample4	Hangzhou_ZJU-01_2020	6		n	N/A
+Sample4	Shanghai_SH0037_2020	6		n	N/A
+Sample4	Nepal_61_2020	6		n	N/A
+Sample4	China_WH-09_2020	6		n	N/A
+Sample4	Jiangxi_IVDC-JX-002_2020	6		n	N/A
+Sample4	Zhejiang_WZ-01_2020	6		n	N/A
+Sample4	Japan_KY-V-029_2020	6		n	N/A
+Sample4	Hangzhou_ZJU-03_2020	6		n	N/A
+Sample4	Netherlands_Utrecht_12_2020	6		n	N/A
+Sample4	Singapore_1_2020	6		n	N/A
+Sample4	Taiwan_NTU02_2020	6		n	N/A
+Sample4	England_SHEF-BFD36_2020	6		n	N/A
+Sample4	France_IDF0626_2020	6		n	N/A
+Sample4	Malaysia_MKAK-CL-2020-7554_2020	6		n	N/A
+Sample4	Cambodia_0012_2020	6		n	N/A
+Sample4	node_17	6		n	N/A
+Sample4	node_18	6		n	N/A
+Sample4	node_19	3		y	G1440A,G2891A,G14948A
+Sample4	node_22	6		n	N/A
+Sample4	node_23	6		n	N/A
+Sample4	node_24	6		n	N/A
+Sample4	node_27	6		n	N/A
+Sample4	node_28	6		n	N/A
+Sample4	node_37	6		n	N/A
+Sample4	node_38	6		n	N/A
+Sample4	node_39	6		n	N/A
+Sample4	node_40	6		n	N/A
+Sample4	node_42	6		n	N/A
+Sample4	node_43	6		n	N/A
+Sample4	node_44	6		n	N/A
+Sample4	node_47	6		n	N/A
+Sample4	node_50	6		n	N/A
+Sample4	node_55	6		n	N/A
+Sample4	node_58	6		n	N/A
+Sample4	node_1_condensed_27_leaves	6		n	N/A
+Sample4	Wuhan_HBCDC-HB-06_2020	8		n	N/A
+Sample4	Wuhan_HBCDC-HB-02_2020	8		n	N/A
+Sample4	Wuhan_HBCDC-HB-04_2020	8		n	N/A
+Sample4	Shanghai_SH0075_2020	8		n	N/A
+Sample4	Shanghai_SH0010_2020	8		n	N/A
+Sample4	Tianmen_HBCDC-HB-07_2020	8		n	N/A
+Sample4	Shanghai_SH0041_2020	8		n	N/A
+Sample4	India_1-31_2020	8		n	N/A
+Sample4	Shanghai_SH0009_2020	8		n	N/A
+Sample4	Malaysia_MKAK-CL-2020-5096_2020	8		n	N/A
+Sample4	node_3	8		n	N/A
+Sample4	node_4	8		n	N/A
+Sample4	node_5	8		n	N/A
+Sample4	node_7	8		n	N/A
+Sample4	node_8	8		n	N/A
+Sample4	England_02_2020	8		n	N/A
+Sample4	node_9	8		n	N/A
+Sample4	node_13	8		n	N/A
+Sample4	node_15	8		n	N/A
+Sample4	node_16	8		n	N/A
+Sample4	node_2_condensed_10_leaves	8		n	N/A
+Sample4	USA_CA-CDPH-UC2_2020	7		n	N/A
+Sample4	USA_CA-CDPH-UC3_2020	7		n	N/A
+Sample4	node_3_condensed_2_leaves	7		n	N/A
+Sample4	node_4_condensed_2_leaves	7		n	N/A
+Sample4	Germany_NRW-10_2020	4		n	N/A
+Sample4	Germany_NRW-09_2020	4		n	N/A
+Sample4	Poland_PL_P1_2020	4		n	N/A
+Sample4	node_20	4		n	N/A
+Sample4	node_5_condensed_5_leaves	4		n	N/A
+Sample4	Malaysia_MKAK-CL-2020-5045_2020	7		n	N/A
+Sample4	node_6_condensed_3_leaves	7		n	N/A
+Sample4	Jiangsu_JS01_2020	7		n	N/A
+Sample4	Shanghai_SH0031_2020	7		n	N/A
+Sample4	Australia_NSW02_2020	7		n	N/A
+Sample4	node_25	7		n	N/A
+Sample4	India_1-27_2020	7		n	N/A
+Sample4	Shanghai_SH0011_2020	7		n	N/A
+Sample4	Fujian_13_2020	7		n	N/A
+Sample4	Singapore_11_2020	7		n	N/A
+Sample4	USA_WI1_2020	7		n	N/A
+Sample4	Wuhan_HBCDC-HB-05_2020	10		n	N/A
+Sample4	Shandong_IVDC-SD-001_2020	10		n	N/A
+Sample4	England_200960041_2020	10		n	N/A
+Sample4	Australia_NSW05_2020	10		n	N/A
+Sample4	node_29	10		n	N/A
+Sample4	node_31	10		n	N/A
+Sample4	node_32	10		n	N/A
+Sample4	Kuwait_KU17_2020	10		n	N/A
+Sample4	node_33	10		n	N/A
+Sample4	node_34	10		n	N/A
+Sample4	node_35	10		n	N/A
+Sample4	node_7_condensed_3_leaves	8		n	N/A
+Sample4	Jiangsu_JS02_2020	7		n	N/A
+Sample4	Shanghai_SH0008_2020	7		n	N/A
+Sample4	USA_CA5_2020	7		n	N/A
+Sample4	Wuhan_WIV02_2019	7		n	N/A
+Sample4	node_8_condensed_2_leaves	7		n	N/A
+Sample4	Singapore_8_2020	7		n	N/A
+Sample4	node_41	7		n	N/A
+Sample4	node_9_condensed_2_leaves	7		n	N/A
+Sample4	Japan_Hu_DP_Kng_19-027_2020	7		n	N/A
+Sample4	node_10_condensed_3_leaves	7		n	N/A
+Sample4	Hangzhou_ZJU-09_2020	7		n	N/A
+Sample4	Australia_VIC01_2020	7		n	N/A
+Sample4	USA_MA1_2020	7		n	N/A
+Sample4	node_45	7		n	N/A
+Sample4	node_48	8		n	N/A
+Sample4	node_49	8		n	N/A
+Sample4	Italy_SPL1_2020	8		n	N/A
+Sample4	England_20102000106_2020	9		n	N/A
+Sample4	node_51	9		n	N/A
+Sample4	node_53	9		n	N/A
+Sample4	England_200960515_2020	9		n	N/A
+Sample4	node_54	9		n	N/A
+Sample4	Netherlands_Utrecht_19_2020	7		n	N/A
+Sample4	Netherlands_Limburg_6_2020	7		n	N/A
+Sample4	Netherlands_Naarden_1364774_2020	7		n	N/A
+Sample4	node_56	7		n	N/A
+Sample4	node_57	7		n	N/A
+Sample4	Shanghai_SH0086_2020	9		n	N/A
+Sample4	node_59	9		n	N/A
+Sample4	node_11_condensed_3_leaves	9		n	N/A
+Sample4	France_GE1583_2020	13		n	N/A
+Sample4	Georgia_Tb-390_2020	13		n	N/A
+Sample4	Spain_Valencia6_2020	13		n	N/A
+Sample4	Spain_CastillayLeon201437_2020	13		n	N/A
+Sample4	node_12_condensed_6_leaves	13		n	N/A
+Sample4	Sichuan_IVDC-SC-001_2020	11		n	N/A
+Sample4	USA_CA1_2020	11		n	N/A
+Sample4	USA_IL2_2020	11		n	N/A
+Sample4	Vietnam_CM99_2020	11		n	N/A
+Sample4	node_13_condensed_3_leaves	11		n	N/A
+Sample4	Shanghai_SH0035_2020	10		n	N/A
+Sample4	Australia_QLD02_2020	10		n	N/A
+Sample4	Australia_QLD03_2020	10		n	N/A
+Sample4	Australia_VIC07_2020	10		n	N/A
+Sample4	node_6	10		n	N/A
+Sample4	node_14_condensed_6_leaves	10		n	N/A
+Sample4	Shandong_LY003_2020	9		n	N/A
+Sample4	Shandong_LY005_2020	9		n	N/A
+Sample4	node_15_condensed_3_leaves	9		n	N/A
+Sample4	node_16_condensed_2_leaves	12		n	N/A
+Sample4	Chongqing_YC01_2020	9		n	N/A
+Sample4	node_10	9		n	N/A
+Sample4	Malaysia_MKAK-CL-2020-6430_2020	9		n	N/A
+Sample4	node_17_condensed_3_leaves	9		n	N/A
+Sample4	Shanghai_SH0059_2020	9		n	N/A
+Sample4	USA_TX1_2020	9		n	N/A
+Sample4	node_14	9		n	N/A
+Sample4	Shanghai_SH0004_2020	9		n	N/A
+Sample4	Germany_BavPat3_2020	9		n	N/A
+Sample4	Shanghai_SH0005_2020	9		n	N/A
+Sample4	Yunnan_IVDC-YN-003_2020	9		n	N/A
+Sample4	USA_AZ1_2020	9		n	N/A
+Sample4	Anhui_SZ005_2020	7		n	N/A
+Sample4	Beijing_233_2020	10		n	N/A
+Sample4	node_18_condensed_3_leaves	10		n	N/A
+Sample4	Germany_NRW-04_2020	6		n	N/A
+Sample4	Germany_NRW-07_2020	6		n	N/A
+Sample4	node_21	6		n	N/A
+Sample4	Hangzhou_ZJU-06_2020	8		n	N/A
+Sample4	node_26	8		n	N/A
+Sample4	Georgia_Tb-82_2020	12		n	N/A
+Sample4	Australia_NSW09_2020	12		n	N/A
+Sample4	node_30	12		n	N/A
+Sample4	Kuwait_KU18_2020	12		n	N/A
+Sample4	Kuwait_KU12_2020	12		n	N/A
+Sample4	Australia_NSW06_2020	12		n	N/A
+Sample4	node_19_condensed_2_leaves	12		n	N/A
+Sample4	Taiwan_CGMH-CGU-04_2020	13		n	N/A
+Sample4	node_20_condensed_2_leaves	13		n	N/A
+Sample4	Canada_BC_17397_2020	11		n	N/A
+Sample4	Canada_BC_13297_2020	11		n	N/A
+Sample4	Australia_QLD09_2020	11		n	N/A
+Sample4	Australia_NSW07_2020	11		n	N/A
+Sample4	USA_NY1-PV08001_2020	11		n	N/A
+Sample4	Canada_BC_37_0-2_2020	11		n	N/A
+Sample4	Canada_BC_69243_2020	11		n	N/A
+Sample4	node_36	11		n	N/A
+Sample4	node_21_condensed_3_leaves	8		n	N/A
+Sample4	Shanghai_SH0058_2020	8		n	N/A
+Sample4	node_46	8		n	N/A
+Sample4	node_22_condensed_2_leaves	8		n	N/A
+Sample4	France_B2334_2020	10		n	N/A
+Sample4	France_B2340_2020	10		n	N/A
+Sample4	Georgia_Tb-468_2020	9		n	N/A
+Sample4	Georgia_Tb-537_2020	9		n	N/A
+Sample4	Georgia_Tb-54_2020	9		n	N/A
+Sample4	England_09c_2020	11		n	N/A
+Sample4	Brazil_ES-225_2020	11		n	N/A
+Sample4	England_20100001406_2020	11		n	N/A
+Sample4	node_52	11		n	N/A
+Sample4	Brazil_SPBR-10_2020	8		n	N/A
+Sample4	Switzerland_1000477102_2020	10		n	N/A
+Sample4	Brazil_SPBR-02_2020	10		n	N/A
+Sample4	England_200990006_2020	10		n	N/A
+Sample4	Netherlands_Utrecht_18_2020	10		n	N/A
+Sample4	node_23_condensed_3_leaves	10		n	N/A
+Sample4	node_24_condensed_2_leaves	8		n	N/A
+Sample4	Netherlands_Oss_1363500_2020	8		n	N/A
+Sample4	Netherlands_Tilburg_1363354_2020	8		n	N/A
+Sample4	Finland_FIN-25_2020	10		n	N/A
+Sample4	Belgium_DB-03023_2020	10		n	N/A
+Sample4	Denmark_SSI-102_2020	10		n	N/A
+Sample4	Denmark_SSI-02_2020	10		n	N/A
+Sample4	Belgium_BM-03012_2020	10		n	N/A
+Sample4	England_20100022706_2020	10		n	N/A
+Sample4	Denmark_SSI-04_2020	10		n	N/A
+Sample4	Taiwan_NTU03_2020	10		n	N/A
+Sample4	Finland_FIN03032020A_2020	10		n	N/A
+Sample4	Switzerland_GE4984_2020	10		n	N/A
+Sample4	Switzerland_AG0361_2020	10		n	N/A
+Sample4	Finland_FIN-266_2020	10		n	N/A
+Sample4	Luxembourg_Lux1_2020	10		n	N/A
+Sample4	Japan_SMU-0311S3_2020	10		n	N/A
+Sample4	Denmark_SSI-03_2020	10		n	N/A
+Sample4	Netherlands_Gelderland_2_2020	10		n	N/A
+Sample4	Georgia_Tb-273_2020	10		n	N/A
+Sample4	Belgium_SH-03014_2020	10		n	N/A
+Sample4	node_60	10		n	N/A
+Sample4	node_62	10		n	N/A
+Sample4	Belgium_VAG-03013_2020	10		n	N/A
+Sample4	node_64	10		n	N/A
+Sample4	node_65	10		n	N/A
+Sample4	node_66	10		n	N/A
+Sample4	node_67	10		n	N/A
+Sample4	node_68	10		n	N/A
+Sample4	node_80	10		n	N/A
+Sample4	node_81	10		n	N/A
+Sample4	node_82	10		n	N/A
+Sample4	node_25_condensed_15_leaves	10		n	N/A
+Sample4	Netherlands_Utrecht_16_2020	11		n	N/A
+Sample4	Netherlands_Utrecht_17_2020	11		n	N/A
+Sample4	node_11	11		n	N/A
+Sample4	node_12	11		n	N/A
+Sample4	Japan_TY-WK-012_2020	10		n	N/A
+Sample4	node_26_condensed_2_leaves	10		n	N/A
+Sample4	node_27_condensed_3_leaves	8		n	N/A
+Sample4	Shanghai_SH0085_2020	10		n	N/A
+Sample4	Shanghai_SH0094_2020	10		n	N/A
+Sample4	Canada_BC_25211_2020	13		n	N/A
+Sample4	Kuwait_KU09_2020	13		n	N/A
+Sample4	England_200990002_2020	13		n	N/A
+Sample4	Germany_BavPat2_2020	13		n	N/A
+Sample4	node_28_condensed_2_leaves	9		n	N/A
+Sample4	node_29_condensed_3_leaves	12		n	N/A
+Sample4	node_61	11		n	N/A
+Sample4	node_30_condensed_4_leaves	11		n	N/A
+Sample4	France_HF2174_2020	12		n	N/A
+Sample4	France_GE1977_2020	12		n	N/A
+Sample4	France_HF1684_2020	12		n	N/A
+Sample4	node_63	12		n	N/A
+Sample4	Netherlands_Utrecht_1363564_2020	14		n	N/A
+Sample4	node_31_condensed_2_leaves	14		n	N/A
+Sample4	England_20099107406_2020	11		n	N/A
+Sample4	Georgia_Tb_2020	11		n	N/A
+Sample4	France_BFC2094_2020	11		n	N/A
+Sample4	France_BFC2147_2020	11		n	N/A
+Sample4	node_32_condensed_4_leaves	11		n	N/A
+Sample4	Hungary_mbl1_2020	11		n	N/A
+Sample4	node_33_condensed_5_leaves	11		n	N/A
+Sample4	Nigeria_Lagos01_2020	13		n	N/A
+Sample4	Netherlands_Delft_1363424_2020	13		n	N/A
+Sample4	Denmark_SSI-01_2020	13		n	N/A
+Sample4	England_200990723_2020	13		n	N/A
+Sample4	Switzerland_TI2045_2020	13		n	N/A
+Sample4	Switzerland_1000477377_2020	13		n	N/A
+Sample4	Denmark_SSI-05_2020	13		n	N/A
+Sample4	Chile_Santiago-2_2020	13		n	N/A
+Sample4	Brazil_SPBR-14_2020	13		n	N/A
+Sample4	Finland_FIN-318_2020	13		n	N/A
+Sample4	Netherlands_Limburg_5_2020	13		n	N/A
+Sample4	Belgium_DBA-03032_2020	13		n	N/A
+Sample4	Switzerland_SZ1417_2020	13		n	N/A
+Sample4	Belgium_GMH-03022_2020	13		n	N/A
+Sample4	Netherlands_Utrecht_14_2020	13		n	N/A
+Sample4	Netherlands_Utrecht_1_2020	13		n	N/A
+Sample4	Finland_FIN03032020C_2020	13		n	N/A
+Sample4	Netherlands_Berlicum_1363564_2020	13		n	N/A
+Sample4	node_69	13		n	N/A
+Sample4	node_70	13		n	N/A
+Sample4	node_71	13		n	N/A
+Sample4	node_72	13		n	N/A
+Sample4	node_73	13		n	N/A
+Sample4	node_74	13		n	N/A
+Sample4	node_75	13		n	N/A
+Sample4	Belgium_BC-03016_2020	13		n	N/A
+Sample4	node_76	13		n	N/A
+Sample4	node_77	13		n	N/A
+Sample4	node_78	13		n	N/A
+Sample4	node_34_condensed_7_leaves	13		n	N/A
+Sample4	Netherlands_NoordHolland_3_2020	11		n	N/A
+Sample4	Netherlands_Flevoland_1_2020	11		n	N/A
+Sample4	NetherlandsL_Houten_1363498_2020	11		n	N/A
+Sample4	Italy_UniSR1_2020	11		n	N/A
+Sample4	France_N1620_2020	11		n	N/A
+Sample4	node_35_condensed_3_leaves	11		n	N/A
+Sample4	Georgia_Tb-673_2020	12		n	N/A
+Sample4	France_B2330_2020	12		n	N/A
+Sample4	France_PL1643_2020	12		n	N/A
+Sample4	France_HF1988_2020	12		n	N/A
+Sample4	France_B2348_2020	12		n	N/A
+Sample4	node_83	12		n	N/A
+Sample4	node_84	12		n	N/A
+Sample4	Netherlands_Haarlem_1363688_2020	12		n	N/A
+Sample4	node_36_condensed_6_leaves	12		n	N/A
+Sample4	USA_CA-CDPH-UC7_2020	14		n	N/A
+Sample4	USA_CA-CDPH-UC9_2020	14		n	N/A
+Sample4	node_37_condensed_2_leaves	13		n	N/A
+Sample4	node_38_condensed_2_leaves	13		n	N/A
+Sample4	node_39_condensed_2_leaves	13		n	N/A
+Sample4	node_40_condensed_2_leaves	15		n	N/A
+Sample4	node_41_condensed_2_leaves	14		n	N/A
+Sample4	node_42_condensed_2_leaves	14		n	N/A
+Sample4	Switzerland_1000477797_2020	14		n	N/A
+Sample4	Brazil_BA-312_2020	14		n	N/A
+Sample4	node_43_condensed_3_leaves	14		n	N/A
+Sample4	Finland_FIN-313_2020	15		n	N/A
+Sample4	Netherlands_Utrecht_15_2020	15		n	N/A
+Sample4	Switzerland_GE1422_2020	14		n	N/A
+Sample4	Netherlands_Diemen_1363454_2020	14		n	N/A
+Sample4	node_44_condensed_3_leaves	14		n	N/A
+Sample4	Switzerland_BE6651_2020	14		n	N/A
+Sample4	Netherlands_NoordHolland_2_2020	14		n	N/A
+Sample4	node_45_condensed_6_leaves	14		n	N/A
+Sample4	Switzerland_1000477757_2020	14		n	N/A
+Sample4	Brazil_SPBR-12_2020	14		n	N/A
+Sample4	Germany_Baden-Wuerttemberg-1_2020	14		n	N/A
+Sample4	node_46_condensed_16_leaves	14		n	N/A
+Sample4	Belgium_UMF-03025_2020	14		n	N/A
+Sample4	node_79	14		n	N/A
+Sample4	France_B2351_2020	13		n	N/A
+Sample4	France_B2344_2020	13		n	N/A
+Sample4	France_B2349_2020	13		n	N/A
+Sample4	France_IDF2256_2020	13		n	N/A
+Sample4	France_HF1871_2020	13		n	N/A
+Sample4	node_47_condensed_2_leaves	15		n	N/A
+Sample5	node_1	5		n	N/A
+Sample5	node_2	6		n	N/A
+Sample5	Shanghai_SH0007_2020	6		n	N/A
+Sample5	Hangzhou_ZJU-07_2020	6		n	N/A
+Sample5	Wuhan_IPBCAMS-WH-03_2019	6		n	N/A
+Sample5	Wuhan_WH01_2019	6		n	N/A
+Sample5	Wuhan_WIV07_2019	6		n	N/A
+Sample5	Shanghai_SH0093_2020	6		n	N/A
+Sample5	Wuhan_HBCDC-HB-01_2019	6		n	N/A
+Sample5	Wuhan_IPBCAMS-WH-01_2019	6		n	N/A
+Sample5	Wuhan_IVDC-HB-04_2020	6		n	N/A
+Sample5	Wuhan_IVDC-HB-05_2019	6		n	N/A
+Sample5	Wuhan_WIV05_2019	6		n	N/A
+Sample5	Sweden_01_2020	6		n	N/A
+Sample5	Taiwan_2_2020	6		n	N/A
+Sample5	USA_CA2_2020	6		n	N/A
+Sample5	Shanghai_SH0040_2020	6		n	N/A
+Sample5	Singapore_7_2020	6		n	N/A
+Sample5	Australia_VIC02_2020	6		n	N/A
+Sample5	France_IDF0515_2020	6		n	N/A
+Sample5	Hangzhou_ZJU-01_2020	6		n	N/A
+Sample5	Shanghai_SH0037_2020	6		n	N/A
+Sample5	Nepal_61_2020	6		n	N/A
+Sample5	China_WH-09_2020	6		n	N/A
+Sample5	Jiangxi_IVDC-JX-002_2020	6		n	N/A
+Sample5	Zhejiang_WZ-01_2020	6		n	N/A
+Sample5	Japan_KY-V-029_2020	6		n	N/A
+Sample5	Hangzhou_ZJU-03_2020	6		n	N/A
+Sample5	Netherlands_Utrecht_12_2020	6		n	N/A
+Sample5	Singapore_1_2020	6		n	N/A
+Sample5	Taiwan_NTU02_2020	6		n	N/A
+Sample5	England_SHEF-BFD36_2020	6		n	N/A
+Sample5	France_IDF0626_2020	6		n	N/A
+Sample5	Malaysia_MKAK-CL-2020-7554_2020	6		n	N/A
+Sample5	Cambodia_0012_2020	6		n	N/A
+Sample5	node_17	6		n	N/A
+Sample5	node_18	6		n	N/A
+Sample5	node_19	3		y	G1440A,G2891A,G14948A
+Sample5	node_22	6		n	N/A
+Sample5	node_23	6		n	N/A
+Sample5	node_24	6		n	N/A
+Sample5	node_27	6		n	N/A
+Sample5	node_28	6		n	N/A
+Sample5	node_37	6		n	N/A
+Sample5	node_38	6		n	N/A
+Sample5	node_39	6		n	N/A
+Sample5	node_40	6		n	N/A
+Sample5	node_42	6		n	N/A
+Sample5	node_43	6		n	N/A
+Sample5	node_44	6		n	N/A
+Sample5	node_47	6		n	N/A
+Sample5	node_50	6		n	N/A
+Sample5	node_55	6		n	N/A
+Sample5	node_58	6		n	N/A
+Sample5	node_1_condensed_27_leaves	6		n	N/A
+Sample5	Wuhan_HBCDC-HB-06_2020	8		n	N/A
+Sample5	Wuhan_HBCDC-HB-02_2020	8		n	N/A
+Sample5	Wuhan_HBCDC-HB-04_2020	8		n	N/A
+Sample5	Shanghai_SH0075_2020	8		n	N/A
+Sample5	Shanghai_SH0010_2020	8		n	N/A
+Sample5	Tianmen_HBCDC-HB-07_2020	8		n	N/A
+Sample5	Shanghai_SH0041_2020	8		n	N/A
+Sample5	India_1-31_2020	8		n	N/A
+Sample5	Shanghai_SH0009_2020	8		n	N/A
+Sample5	Malaysia_MKAK-CL-2020-5096_2020	8		n	N/A
+Sample5	node_3	8		n	N/A
+Sample5	node_4	8		n	N/A
+Sample5	node_5	8		n	N/A
+Sample5	node_7	8		n	N/A
+Sample5	node_8	8		n	N/A
+Sample5	England_02_2020	8		n	N/A
+Sample5	node_9	8		n	N/A
+Sample5	node_13	8		n	N/A
+Sample5	node_15	8		n	N/A
+Sample5	node_16	8		n	N/A
+Sample5	node_2_condensed_10_leaves	8		n	N/A
+Sample5	USA_CA-CDPH-UC2_2020	7		n	N/A
+Sample5	USA_CA-CDPH-UC3_2020	7		n	N/A
+Sample5	node_3_condensed_2_leaves	7		n	N/A
+Sample5	node_4_condensed_2_leaves	7		n	N/A
+Sample5	Germany_NRW-10_2020	4		n	N/A
+Sample5	Germany_NRW-09_2020	4		n	N/A
+Sample5	Poland_PL_P1_2020	4		n	N/A
+Sample5	node_20	4		n	N/A
+Sample5	node_5_condensed_5_leaves	4		n	N/A
+Sample5	Malaysia_MKAK-CL-2020-5045_2020	7		n	N/A
+Sample5	node_6_condensed_3_leaves	7		n	N/A
+Sample5	Jiangsu_JS01_2020	7		n	N/A
+Sample5	Shanghai_SH0031_2020	7		n	N/A
+Sample5	Australia_NSW02_2020	7		n	N/A
+Sample5	node_25	7		n	N/A
+Sample5	India_1-27_2020	7		n	N/A
+Sample5	Shanghai_SH0011_2020	7		n	N/A
+Sample5	Fujian_13_2020	7		n	N/A
+Sample5	Singapore_11_2020	7		n	N/A
+Sample5	USA_WI1_2020	7		n	N/A
+Sample5	Wuhan_HBCDC-HB-05_2020	10		n	N/A
+Sample5	Shandong_IVDC-SD-001_2020	10		n	N/A
+Sample5	England_200960041_2020	10		n	N/A
+Sample5	Australia_NSW05_2020	10		n	N/A
+Sample5	node_29	10		n	N/A
+Sample5	node_31	10		n	N/A
+Sample5	node_32	10		n	N/A
+Sample5	Kuwait_KU17_2020	10		n	N/A
+Sample5	node_33	10		n	N/A
+Sample5	node_34	10		n	N/A
+Sample5	node_35	10		n	N/A
+Sample5	node_7_condensed_3_leaves	8		n	N/A
+Sample5	Jiangsu_JS02_2020	7		n	N/A
+Sample5	Shanghai_SH0008_2020	7		n	N/A
+Sample5	USA_CA5_2020	7		n	N/A
+Sample5	Wuhan_WIV02_2019	7		n	N/A
+Sample5	node_8_condensed_2_leaves	7		n	N/A
+Sample5	Singapore_8_2020	7		n	N/A
+Sample5	node_41	7		n	N/A
+Sample5	node_9_condensed_2_leaves	7		n	N/A
+Sample5	Japan_Hu_DP_Kng_19-027_2020	7		n	N/A
+Sample5	node_10_condensed_3_leaves	7		n	N/A
+Sample5	Hangzhou_ZJU-09_2020	7		n	N/A
+Sample5	Australia_VIC01_2020	7		n	N/A
+Sample5	USA_MA1_2020	7		n	N/A
+Sample5	node_45	7		n	N/A
+Sample5	node_48	8		n	N/A
+Sample5	node_49	8		n	N/A
+Sample5	Italy_SPL1_2020	8		n	N/A
+Sample5	England_20102000106_2020	9		n	N/A
+Sample5	node_51	9		n	N/A
+Sample5	node_53	9		n	N/A
+Sample5	England_200960515_2020	9		n	N/A
+Sample5	node_54	9		n	N/A
+Sample5	Netherlands_Utrecht_19_2020	7		n	N/A
+Sample5	Netherlands_Limburg_6_2020	7		n	N/A
+Sample5	Netherlands_Naarden_1364774_2020	7		n	N/A
+Sample5	node_56	7		n	N/A
+Sample5	node_57	7		n	N/A
+Sample5	Shanghai_SH0086_2020	9		n	N/A
+Sample5	node_59	9		n	N/A
+Sample5	node_11_condensed_3_leaves	9		n	N/A
+Sample5	France_GE1583_2020	13		n	N/A
+Sample5	Georgia_Tb-390_2020	13		n	N/A
+Sample5	Spain_Valencia6_2020	13		n	N/A
+Sample5	Spain_CastillayLeon201437_2020	13		n	N/A
+Sample5	node_12_condensed_6_leaves	13		n	N/A
+Sample5	Sichuan_IVDC-SC-001_2020	11		n	N/A
+Sample5	USA_CA1_2020	11		n	N/A
+Sample5	USA_IL2_2020	11		n	N/A
+Sample5	Vietnam_CM99_2020	11		n	N/A
+Sample5	node_13_condensed_3_leaves	11		n	N/A
+Sample5	Shanghai_SH0035_2020	10		n	N/A
+Sample5	Australia_QLD02_2020	10		n	N/A
+Sample5	Australia_QLD03_2020	10		n	N/A
+Sample5	Australia_VIC07_2020	10		n	N/A
+Sample5	node_6	10		n	N/A
+Sample5	node_14_condensed_6_leaves	10		n	N/A
+Sample5	Shandong_LY003_2020	9		n	N/A
+Sample5	Shandong_LY005_2020	9		n	N/A
+Sample5	node_15_condensed_3_leaves	9		n	N/A
+Sample5	node_16_condensed_2_leaves	12		n	N/A
+Sample5	Chongqing_YC01_2020	9		n	N/A
+Sample5	node_10	9		n	N/A
+Sample5	Malaysia_MKAK-CL-2020-6430_2020	9		n	N/A
+Sample5	node_17_condensed_3_leaves	9		n	N/A
+Sample5	Shanghai_SH0059_2020	9		n	N/A
+Sample5	USA_TX1_2020	9		n	N/A
+Sample5	node_14	9		n	N/A
+Sample5	Shanghai_SH0004_2020	9		n	N/A
+Sample5	Germany_BavPat3_2020	9		n	N/A
+Sample5	Shanghai_SH0005_2020	9		n	N/A
+Sample5	Yunnan_IVDC-YN-003_2020	9		n	N/A
+Sample5	USA_AZ1_2020	9		n	N/A
+Sample5	Anhui_SZ005_2020	7		n	N/A
+Sample5	Beijing_233_2020	10		n	N/A
+Sample5	node_18_condensed_3_leaves	10		n	N/A
+Sample5	Germany_NRW-04_2020	6		n	N/A
+Sample5	Germany_NRW-07_2020	6		n	N/A
+Sample5	node_21	6		n	N/A
+Sample5	Hangzhou_ZJU-06_2020	8		n	N/A
+Sample5	node_26	8		n	N/A
+Sample5	Georgia_Tb-82_2020	12		n	N/A
+Sample5	Australia_NSW09_2020	12		n	N/A
+Sample5	node_30	12		n	N/A
+Sample5	Kuwait_KU18_2020	12		n	N/A
+Sample5	Kuwait_KU12_2020	12		n	N/A
+Sample5	Australia_NSW06_2020	12		n	N/A
+Sample5	node_19_condensed_2_leaves	12		n	N/A
+Sample5	Taiwan_CGMH-CGU-04_2020	13		n	N/A
+Sample5	node_20_condensed_2_leaves	13		n	N/A
+Sample5	Canada_BC_17397_2020	11		n	N/A
+Sample5	Canada_BC_13297_2020	11		n	N/A
+Sample5	Australia_QLD09_2020	11		n	N/A
+Sample5	Australia_NSW07_2020	11		n	N/A
+Sample5	USA_NY1-PV08001_2020	11		n	N/A
+Sample5	Canada_BC_37_0-2_2020	11		n	N/A
+Sample5	Canada_BC_69243_2020	11		n	N/A
+Sample5	node_36	11		n	N/A
+Sample5	node_21_condensed_3_leaves	8		n	N/A
+Sample5	Shanghai_SH0058_2020	8		n	N/A
+Sample5	node_46	8		n	N/A
+Sample5	node_22_condensed_2_leaves	8		n	N/A
+Sample5	France_B2334_2020	10		n	N/A
+Sample5	France_B2340_2020	10		n	N/A
+Sample5	Georgia_Tb-468_2020	9		n	N/A
+Sample5	Georgia_Tb-537_2020	9		n	N/A
+Sample5	Georgia_Tb-54_2020	9		n	N/A
+Sample5	England_09c_2020	11		n	N/A
+Sample5	Brazil_ES-225_2020	11		n	N/A
+Sample5	England_20100001406_2020	11		n	N/A
+Sample5	node_52	11		n	N/A
+Sample5	Brazil_SPBR-10_2020	8		n	N/A
+Sample5	Switzerland_1000477102_2020	10		n	N/A
+Sample5	Brazil_SPBR-02_2020	10		n	N/A
+Sample5	England_200990006_2020	10		n	N/A
+Sample5	Netherlands_Utrecht_18_2020	10		n	N/A
+Sample5	node_23_condensed_3_leaves	10		n	N/A
+Sample5	node_24_condensed_2_leaves	8		n	N/A
+Sample5	Netherlands_Oss_1363500_2020	8		n	N/A
+Sample5	Netherlands_Tilburg_1363354_2020	8		n	N/A
+Sample5	Finland_FIN-25_2020	10		n	N/A
+Sample5	Belgium_DB-03023_2020	10		n	N/A
+Sample5	Denmark_SSI-102_2020	10		n	N/A
+Sample5	Denmark_SSI-02_2020	10		n	N/A
+Sample5	Belgium_BM-03012_2020	10		n	N/A
+Sample5	England_20100022706_2020	10		n	N/A
+Sample5	Denmark_SSI-04_2020	10		n	N/A
+Sample5	Taiwan_NTU03_2020	10		n	N/A
+Sample5	Finland_FIN03032020A_2020	10		n	N/A
+Sample5	Switzerland_GE4984_2020	10		n	N/A
+Sample5	Switzerland_AG0361_2020	10		n	N/A
+Sample5	Finland_FIN-266_2020	10		n	N/A
+Sample5	Luxembourg_Lux1_2020	10		n	N/A
+Sample5	Japan_SMU-0311S3_2020	10		n	N/A
+Sample5	Denmark_SSI-03_2020	10		n	N/A
+Sample5	Netherlands_Gelderland_2_2020	10		n	N/A
+Sample5	Georgia_Tb-273_2020	10		n	N/A
+Sample5	Belgium_SH-03014_2020	10		n	N/A
+Sample5	node_60	10		n	N/A
+Sample5	node_62	10		n	N/A
+Sample5	Belgium_VAG-03013_2020	10		n	N/A
+Sample5	node_64	10		n	N/A
+Sample5	node_65	10		n	N/A
+Sample5	node_66	10		n	N/A
+Sample5	node_67	10		n	N/A
+Sample5	node_68	10		n	N/A
+Sample5	node_80	10		n	N/A
+Sample5	node_81	10		n	N/A
+Sample5	node_82	10		n	N/A
+Sample5	node_25_condensed_15_leaves	10		n	N/A
+Sample5	Netherlands_Utrecht_16_2020	11		n	N/A
+Sample5	Netherlands_Utrecht_17_2020	11		n	N/A
+Sample5	node_11	11		n	N/A
+Sample5	node_12	11		n	N/A
+Sample5	Japan_TY-WK-012_2020	10		n	N/A
+Sample5	node_26_condensed_2_leaves	10		n	N/A
+Sample5	node_27_condensed_3_leaves	8		n	N/A
+Sample5	Shanghai_SH0085_2020	10		n	N/A
+Sample5	Shanghai_SH0094_2020	10		n	N/A
+Sample5	Canada_BC_25211_2020	13		n	N/A
+Sample5	Kuwait_KU09_2020	13		n	N/A
+Sample5	England_200990002_2020	13		n	N/A
+Sample5	Germany_BavPat2_2020	13		n	N/A
+Sample5	node_28_condensed_2_leaves	9		n	N/A
+Sample5	node_29_condensed_3_leaves	12		n	N/A
+Sample5	node_61	11		n	N/A
+Sample5	node_30_condensed_4_leaves	11		n	N/A
+Sample5	France_HF2174_2020	12		n	N/A
+Sample5	France_GE1977_2020	12		n	N/A
+Sample5	France_HF1684_2020	12		n	N/A
+Sample5	node_63	12		n	N/A
+Sample5	Netherlands_Utrecht_1363564_2020	14		n	N/A
+Sample5	node_31_condensed_2_leaves	14		n	N/A
+Sample5	England_20099107406_2020	11		n	N/A
+Sample5	Georgia_Tb_2020	11		n	N/A
+Sample5	France_BFC2094_2020	11		n	N/A
+Sample5	France_BFC2147_2020	11		n	N/A
+Sample5	node_32_condensed_4_leaves	11		n	N/A
+Sample5	Hungary_mbl1_2020	11		n	N/A
+Sample5	node_33_condensed_5_leaves	11		n	N/A
+Sample5	Nigeria_Lagos01_2020	13		n	N/A
+Sample5	Netherlands_Delft_1363424_2020	13		n	N/A
+Sample5	Denmark_SSI-01_2020	13		n	N/A
+Sample5	England_200990723_2020	13		n	N/A
+Sample5	Switzerland_TI2045_2020	13		n	N/A
+Sample5	Switzerland_1000477377_2020	13		n	N/A
+Sample5	Denmark_SSI-05_2020	13		n	N/A
+Sample5	Chile_Santiago-2_2020	13		n	N/A
+Sample5	Brazil_SPBR-14_2020	13		n	N/A
+Sample5	Finland_FIN-318_2020	13		n	N/A
+Sample5	Netherlands_Limburg_5_2020	13		n	N/A
+Sample5	Belgium_DBA-03032_2020	13		n	N/A
+Sample5	Switzerland_SZ1417_2020	13		n	N/A
+Sample5	Belgium_GMH-03022_2020	13		n	N/A
+Sample5	Netherlands_Utrecht_14_2020	13		n	N/A
+Sample5	Netherlands_Utrecht_1_2020	13		n	N/A
+Sample5	Finland_FIN03032020C_2020	13		n	N/A
+Sample5	Netherlands_Berlicum_1363564_2020	13		n	N/A
+Sample5	node_69	13		n	N/A
+Sample5	node_70	13		n	N/A
+Sample5	node_71	13		n	N/A
+Sample5	node_72	13		n	N/A
+Sample5	node_73	13		n	N/A
+Sample5	node_74	13		n	N/A
+Sample5	node_75	13		n	N/A
+Sample5	Belgium_BC-03016_2020	13		n	N/A
+Sample5	node_76	13		n	N/A
+Sample5	node_77	13		n	N/A
+Sample5	node_78	13		n	N/A
+Sample5	node_34_condensed_7_leaves	13		n	N/A
+Sample5	Netherlands_NoordHolland_3_2020	11		n	N/A
+Sample5	Netherlands_Flevoland_1_2020	11		n	N/A
+Sample5	NetherlandsL_Houten_1363498_2020	11		n	N/A
+Sample5	Italy_UniSR1_2020	11		n	N/A
+Sample5	France_N1620_2020	11		n	N/A
+Sample5	node_35_condensed_3_leaves	11		n	N/A
+Sample5	Georgia_Tb-673_2020	12		n	N/A
+Sample5	France_B2330_2020	12		n	N/A
+Sample5	France_PL1643_2020	12		n	N/A
+Sample5	France_HF1988_2020	12		n	N/A
+Sample5	France_B2348_2020	12		n	N/A
+Sample5	node_83	12		n	N/A
+Sample5	node_84	12		n	N/A
+Sample5	Netherlands_Haarlem_1363688_2020	12		n	N/A
+Sample5	node_36_condensed_6_leaves	12		n	N/A
+Sample5	USA_CA-CDPH-UC7_2020	14		n	N/A
+Sample5	USA_CA-CDPH-UC9_2020	14		n	N/A
+Sample5	node_37_condensed_2_leaves	13		n	N/A
+Sample5	node_38_condensed_2_leaves	13		n	N/A
+Sample5	node_39_condensed_2_leaves	13		n	N/A
+Sample5	node_40_condensed_2_leaves	15		n	N/A
+Sample5	node_41_condensed_2_leaves	14		n	N/A
+Sample5	node_42_condensed_2_leaves	14		n	N/A
+Sample5	Switzerland_1000477797_2020	14		n	N/A
+Sample5	Brazil_BA-312_2020	14		n	N/A
+Sample5	node_43_condensed_3_leaves	14		n	N/A
+Sample5	Finland_FIN-313_2020	15		n	N/A
+Sample5	Netherlands_Utrecht_15_2020	15		n	N/A
+Sample5	Switzerland_GE1422_2020	14		n	N/A
+Sample5	Netherlands_Diemen_1363454_2020	14		n	N/A
+Sample5	node_44_condensed_3_leaves	14		n	N/A
+Sample5	Switzerland_BE6651_2020	14		n	N/A
+Sample5	Netherlands_NoordHolland_2_2020	14		n	N/A
+Sample5	node_45_condensed_6_leaves	14		n	N/A
+Sample5	Switzerland_1000477757_2020	14		n	N/A
+Sample5	Brazil_SPBR-12_2020	14		n	N/A
+Sample5	Germany_Baden-Wuerttemberg-1_2020	14		n	N/A
+Sample5	node_46_condensed_16_leaves	14		n	N/A
+Sample5	Belgium_UMF-03025_2020	14		n	N/A
+Sample5	node_79	14		n	N/A
+Sample5	France_B2351_2020	13		n	N/A
+Sample5	France_B2344_2020	13		n	N/A
+Sample5	France_B2349_2020	13		n	N/A
+Sample5	France_IDF2256_2020	13		n	N/A
+Sample5	France_HF1871_2020	13		n	N/A
+Sample5	node_47_condensed_2_leaves	15		n	N/A
diff -r 000000000000 -r 359daa4b6d10 test-data/test_06_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_06_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_06_mutation_paths.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_06_mutation_paths.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_85:A27669G 
+Sample2	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
+Sample5	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_07_single_subtree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_07_single_subtree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((((Sample5:0,Sample4:0)node_87:1,Sample3:0,Sample2:0)node_86:1,Sample1:0)node_85:3,England_SHEF-BFD36_2020:3,France_HF2174_2020:8)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_07_single_subtree_mutations.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_07_single_subtree_mutations.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,11 @@
+node_1: 
+node_85: G1440A,G2891A,A27669G
+node_86: G14948A
+node_87: A23013G
+Sample5: 
+Sample4: 
+Sample3: 
+Sample2: 
+Sample1: 
+England_SHEF-BFD36_2020: C10741T,C20270T,A29683T
+France_HF2174_2020: C241T,C2416T,C3037T,A12745G,C14408T,C20234T,A23403G,G25563T
diff -r 000000000000 -r 359daa4b6d10 test-data/test_08_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_08_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_08_mutation_path.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_08_mutation_path.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_85:A27669G 
+Sample2	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
+Sample5	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_09_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_09_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_09_mutation_path.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_09_mutation_path.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_85:A27669G 
+Sample2	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
+Sample5	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_10_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_10_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,(Sample4:0,Sample5:0)node_85:1,Sample2:0)node_86:1)node_87:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_10_mutation_path.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_10_mutation_path.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_87:A27669G 
+Sample2	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G 
+Sample5	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_11_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_11_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,(Sample4:0,Sample5:0)node_85:1,Sample2:0)node_86:1)node_87:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_11_mutation_path.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_11_mutation_path.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_87:A27669G 
+Sample2	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G 
+Sample5	node_19:G1440A,G2891A node_87:A27669G node_86:G14948A node_85:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_12_final_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_12_final_tree.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1 @@
+((Wuhan_HBCDC-HB-06_2020:3,Wuhan_HBCDC-HB-02_2020:2,Wuhan_HBCDC-HB-04_2020:3,Shanghai_SH0075_2020:2,Shanghai_SH0010_2020:2,Tianmen_HBCDC-HB-07_2020:5,Shanghai_SH0041_2020:4,India_1-31_2020:4,Shanghai_SH0009_2020:1,Malaysia_MKAK-CL-2020-5096_2020:2,(France_GE1583_2020:1,Georgia_Tb-390_2020:1,Spain_Valencia6_2020:1,Spain_CastillayLeon201437_2020:1,node_12_condensed_6_leaves:0)node_3:5,(Sichuan_IVDC-SC-001_2020:1,USA_CA1_2020:1,USA_IL2_2020:2,Vietnam_CM99_2020:2,node_13_condensed_3_leaves:0)node_4:3,(Shanghai_SH0035_2020:2,Australia_QLD02_2020:2,Australia_QLD03_2020:1,Australia_VIC07_2020:1,(Netherlands_Utrecht_16_2020:1,Netherlands_Utrecht_17_2020:0)node_6:1,node_14_condensed_6_leaves:0)node_5:2,(Shandong_LY003_2020:2,Shandong_LY005_2020:2,node_15_condensed_3_leaves:0)node_7:1,(node_16_condensed_2_leaves:0)node_8:4,England_02_2020:3,(Chongqing_YC01_2020:2,((USA_CA-CDPH-UC7_2020:0,USA_CA-CDPH-UC9_2020:1)node_11:3,(node_37_condensed_2_leaves:0)node_12:2)node_10:2,Malaysia_MKAK-CL-2020-6430_2020:1,node_17_condensed_3_leaves:0)node_9:1,(Shanghai_SH0059_2020:3,USA_TX1_2020:4,(Japan_TY-WK-012_2020:1,node_26_condensed_2_leaves:0)node_14:1,Shanghai_SH0004_2020:1,Germany_BavPat3_2020:1,Shanghai_SH0005_2020:0)node_13:1,(Yunnan_IVDC-YN-003_2020:0,USA_AZ1_2020:1,Anhui_SZ005_2020:6)node_15:1,(Beijing_233_2020:1,node_18_condensed_3_leaves:0)node_16:2,node_2_condensed_10_leaves:0)node_2:2,Shanghai_SH0007_2020:3,Hangzhou_ZJU-07_2020:5,Wuhan_IPBCAMS-WH-03_2019:1,Wuhan_WH01_2019:2,Wuhan_WIV07_2019:1,Shanghai_SH0093_2020:2,Wuhan_HBCDC-HB-01_2019:1,Wuhan_IPBCAMS-WH-01_2019:3,Wuhan_IVDC-HB-04_2020:2,Wuhan_IVDC-HB-05_2019:2,Wuhan_WIV05_2019:2,Sweden_01_2020:7,Taiwan_2_2020:3,USA_CA2_2020:2,Shanghai_SH0040_2020:2,Singapore_7_2020:2,Australia_VIC02_2020:2,France_IDF0515_2020:3,Hangzhou_ZJU-01_2020:3,Shanghai_SH0037_2020:5,Nepal_61_2020:1,China_WH-09_2020:1,Jiangxi_IVDC-JX-002_2020:1,Zhejiang_WZ-01_2020:1,Japan_KY-V-029_2020:3,Hangzhou_ZJU-03_2020:1,Netherlands_Utrecht_12_2020:2,Singapore_1_2020:1,Taiwan_NTU02_2020:2,England_SHEF-BFD36_2020:3,France_IDF0626_2020:1,Malaysia_MKAK-CL-2020-7554_2020:2,Cambodia_0012_2020:1,(USA_CA-CDPH-UC2_2020:4,USA_CA-CDPH-UC3_2020:1,node_3_condensed_2_leaves:0)node_17:1,(node_4_condensed_2_leaves:0)node_18:1,(Germany_NRW-10_2020:1,Germany_NRW-09_2020:1,Poland_PL_P1_2020:1,(Germany_NRW-04_2020:0,Germany_NRW-07_2020:1,(node_27_condensed_3_leaves:0)node_21:2)node_20:2,node_5_condensed_5_leaves:0,(Sample1:0,(Sample3:0,Sample2:0,(Sample5:0,Sample4:0)node_87:1)node_86:1)node_85:1)node_19:2,(Malaysia_MKAK-CL-2020-5045_2020:2,node_6_condensed_3_leaves:0)node_22:1,(Jiangsu_JS01_2020:2,Shanghai_SH0031_2020:1)node_23:1,(Australia_NSW02_2020:1,(Hangzhou_ZJU-06_2020:1,(Shanghai_SH0085_2020:4,Shanghai_SH0094_2020:0)node_26:2)node_25:1)node_24:1,(India_1-27_2020:3,Shanghai_SH0011_2020:1,Fujian_13_2020:1,Singapore_11_2020:1,USA_WI1_2020:0)node_27:1,(Wuhan_HBCDC-HB-05_2020:1,Shandong_IVDC-SD-001_2020:3,England_200960041_2020:2,Australia_NSW05_2020:1,(Georgia_Tb-82_2020:2,Australia_NSW09_2020:3,(Canada_BC_25211_2020:4,Kuwait_KU09_2020:2)node_30:1,Kuwait_KU18_2020:1,Kuwait_KU12_2020:2,Australia_NSW06_2020:1)node_29:2,(node_19_condensed_2_leaves:0)node_31:2,(Taiwan_CGMH-CGU-04_2020:3,node_20_condensed_2_leaves:0)node_32:3,Kuwait_KU17_2020:1,(Canada_BC_17397_2020:2,Canada_BC_13297_2020:2)node_33:1,(Australia_QLD09_2020:1,Australia_NSW07_2020:0)node_34:1,(USA_NY1-PV08001_2020:3,Canada_BC_37_0-2_2020:0,Canada_BC_69243_2020:2,(England_200990002_2020:2,Germany_BavPat2_2020:1)node_36:2)node_35:1)node_28:4,(node_7_condensed_3_leaves:0)node_37:2,(Jiangsu_JS02_2020:4,Shanghai_SH0008_2020:3,USA_CA5_2020:1)node_38:1,(Wuhan_WIV02_2019:1,node_8_condensed_2_leaves:0)node_39:1,(Singapore_8_2020:1,(node_21_condensed_3_leaves:0)node_41:1,node_9_condensed_2_leaves:0)node_40:1,(Japan_Hu_DP_Kng_19-027_2020:1,node_10_condensed_3_leaves:0)node_42:1,(Hangzhou_ZJU-09_2020:0,Australia_VIC01_2020:3)node_43:1,(USA_MA1_2020:3,(Shanghai_SH0058_2020:4,(node_28_condensed_2_leaves:0)node_46:1,node_22_condensed_2_leaves:0)node_45:1)node_44:1,((France_B2334_2020:1,France_B2340_2020:1)node_48:2,(Georgia_Tb-468_2020:1,Georgia_Tb-537_2020:1,Georgia_Tb-54_2020:0)node_49:1,Italy_SPL1_2020:0)node_47:2,(England_20102000106_2020:2,(England_09c_2020:0,Brazil_ES-225_2020:1,England_20100001406_2020:1,(node_29_condensed_3_leaves:0)node_52:1)node_51:2,(Brazil_SPBR-10_2020:1,Switzerland_1000477102_2020:2,Brazil_SPBR-02_2020:1,England_200990006_2020:0,Netherlands_Utrecht_18_2020:2)node_53:1,England_200960515_2020:1,(node_23_condensed_3_leaves:0)node_54:1)node_50:3,(Netherlands_Utrecht_19_2020:3,Netherlands_Limburg_6_2020:2,Netherlands_Naarden_1364774_2020:0,(node_24_condensed_2_leaves:0)node_56:1,(Netherlands_Oss_1363500_2020:0,Netherlands_Tilburg_1363354_2020:2)node_57:1)node_55:1,(Shanghai_SH0086_2020:3,(Finland_FIN-25_2020:6,Belgium_DB-03023_2020:4,Denmark_SSI-102_2020:3,Denmark_SSI-02_2020:1,Belgium_BM-03012_2020:3,England_20100022706_2020:2,Denmark_SSI-04_2020:3,Taiwan_NTU03_2020:2,Finland_FIN03032020A_2020:2,Switzerland_GE4984_2020:2,Switzerland_AG0361_2020:2,Finland_FIN-266_2020:1,Luxembourg_Lux1_2020:1,Japan_SMU-0311S3_2020:1,Denmark_SSI-03_2020:1,Netherlands_Gelderland_2_2020:1,Georgia_Tb-273_2020:1,Belgium_SH-03014_2020:1,((node_38_condensed_2_leaves:0)node_61:2,node_30_condensed_4_leaves:0)node_60:1,(France_HF2174_2020:2,France_GE1977_2020:3,France_HF1684_2020:0,(node_39_condensed_2_leaves:0)node_63:1)node_62:2,Belgium_VAG-03013_2020:4,(Netherlands_Utrecht_1363564_2020:1,node_31_condensed_2_leaves:0)node_64:4,(England_20099107406_2020:1,Georgia_Tb_2020:0)node_65:1,(France_BFC2094_2020:1,France_BFC2147_2020:1,node_32_condensed_4_leaves:0)node_66:1,(Hungary_mbl1_2020:1,node_33_condensed_5_leaves:0)node_67:1,(Nigeria_Lagos01_2020:1,Netherlands_Delft_1363424_2020:1,Denmark_SSI-01_2020:1,England_200990723_2020:1,Switzerland_TI2045_2020:1,Switzerland_1000477377_2020:2,Denmark_SSI-05_2020:4,Chile_Santiago-2_2020:1,Brazil_SPBR-14_2020:1,Finland_FIN-318_2020:2,Netherlands_Limburg_5_2020:2,Belgium_DBA-03032_2020:2,Switzerland_SZ1417_2020:2,Belgium_GMH-03022_2020:2,Netherlands_Utrecht_14_2020:2,Netherlands_Utrecht_1_2020:2,Finland_FIN03032020C_2020:1,Netherlands_Berlicum_1363564_2020:1,(node_40_condensed_2_leaves:0)node_69:2,(node_41_condensed_2_leaves:0)node_70:1,(node_42_condensed_2_leaves:0)node_71:1,(Switzerland_1000477797_2020:1,Brazil_BA-312_2020:1,node_43_condensed_3_leaves:0)node_72:1,(Finland_FIN-313_2020:1,Netherlands_Utrecht_15_2020:0)node_73:2,(Switzerland_GE1422_2020:1,Netherlands_Diemen_1363454_2020:3,node_44_condensed_3_leaves:0)node_74:1,(Switzerland_BE6651_2020:1,Netherlands_NoordHolland_2_2020:1,node_45_condensed_6_leaves:0)node_75:1,Belgium_BC-03016_2020:2,(Switzerland_1000477757_2020:2,Brazil_SPBR-12_2020:1,Germany_Baden-Wuerttemberg-1_2020:0)node_76:1,(node_46_condensed_16_leaves:0)node_77:1,(Belgium_UMF-03025_2020:0,(node_47_condensed_2_leaves:0)node_79:1)node_78:1,node_34_condensed_7_leaves:0)node_68:3,(Netherlands_NoordHolland_3_2020:2,Netherlands_Flevoland_1_2020:0)node_80:1,(NetherlandsL_Houten_1363498_2020:1,Italy_UniSR1_2020:1,France_N1620_2020:1,node_35_condensed_3_leaves:0)node_81:1,(Georgia_Tb-673_2020:2,France_B2330_2020:1,France_PL1643_2020:2,France_HF1988_2020:1,France_B2348_2020:1,(France_B2351_2020:1,France_B2344_2020:1,France_B2349_2020:0)node_83:1,(France_IDF2256_2020:1,France_HF1871_2020:2)node_84:1,Netherlands_Haarlem_1363688_2020:1,node_36_condensed_6_leaves:0)node_82:2,node_25_condensed_15_leaves:0)node_59:1,node_11_condensed_3_leaves:0)node_58:3,node_1_condensed_27_leaves:0)node_1:0;
\ No newline at end of file
diff -r 000000000000 -r 359daa4b6d10 test-data/test_12_mutation_path.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_12_mutation_path.nh	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,5 @@
+Sample1	node_19:G1440A,G2891A node_85:A27669G 
+Sample2	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample3	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A 
+Sample4	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
+Sample5	node_19:G1440A,G2891A node_85:A27669G node_86:G14948A node_87:A23013G 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_13_path_clades.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_13_path_clades.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,623 @@
+clade	root_id	from_tree_root
+19A	node_1	
+B	node_1	
+B.26	node_4	 > C7423T
+B.48	node_5	 > C20270T
+B.15	node_8	 > T4949C
+B.5	node_9	 > C29635T
+B.54	node_10	 > C14805T,G26144T
+B.47	node_24	 > A10982G
+B.20	node_660	 > A14940G
+B.52	node_661	 > A1904G,C8090T,C10789T
+B.11	node_662	 > T514C
+B.46	node_663	 > A12557G,C24904T,A27359G
+B.1.14	node_664	 > C25692T
+B.27	node_665	 > G29032A
+B.19	node_666	 > C10277T
+B.6	node_674	 > C6312A,C13730T,C23929T,C28311T
+19B	node_676	 > C8782T,T28144C
+A	node_676	 > C8782T,T28144C
+B.10	node_698	 > C6696T
+B.4	node_699	 > G1397A,T28688C,G29742T
+B.23	node_6	 > C20270T > A29683T
+B.33	node_11	 > C14805T,G26144T > T17247C
+B.28	node_18	 > C14805T,G26144T > G28842T
+B.29	node_19	 > C14805T,G26144T > C23707T
+B.40	node_20	 > C14805T,G26144T > A2480G,C2558T
+B.30	node_21	 > C14805T,G26144T > A4236G,T25655C
+B.41	node_22	 > C14805T,G26144T > G5572T
+B.31	node_23	 > C14805T,G26144T > G13627T,C15540T,A28338G
+B.1	node_26	 > C241T > C14408T
+B.3	node_658	 > C241T > T241C,G1440A,G2891A
+B.18	node_668	 > G29711T > C1218T,G27806T
+B.13	node_669	 > G29711T > A4838G,C7420T,C14937T,C20148T
+B.51	node_670	 > G29711T > T2116A
+B.45	node_672	 > C28854T > C12710T
+B.12	node_673	 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C
+B.6.6	node_675	 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T
+A.1	node_681	 > C8782T,T28144C > A17858G,C18060T
+A.2	node_682	 > C8782T,T28144C > T9477A,C14805T,G25979T
+A.3	node_697	 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C
+B.4.4	node_700	 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C
+B.4.5	node_701	 > G1397A,T28688C,G29742T > C1076T
+B.37	node_13	 > C14805T,G26144T > T17247C > C8078T
+B.35	node_14	 > C14805T,G26144T > T17247C > A7479G,C25572T
+B.32	node_15	 > C14805T,G26144T > T17247C > A1587G
+B.34	node_16	 > C14805T,G26144T > T17247C > C988T
+B.39	node_17	 > C14805T,G26144T > T17247C > A1515G,C9223T
+B.3.1	node_659	 > C241T > T241C,G1440A,G2891A > G28851T
+A.5	node_678	 > C8782T,T28144C > A23403G,C26088T > G23403A
+A.10	node_680	 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G
+A.28	node_695	 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T
+A.12	node_696	 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T
+20A	node_28	 > C241T > C14408T > A23403G > C3037T
+B.1.108	node_28	 > C241T > C14408T > A23403G > C3037T
+A.23.1	node_691	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C
+A.4	node_692	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T
+A.11	node_693	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T
+A.21	node_694	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T
+B.1.105	node_45	 > C241T > C14408T > A23403G > C3037T > G28514T
+B.1.152	node_46	 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C
+B.1.103	node_47	 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T
+B.1.188	node_48	 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T
+B.1.378	node_49	 > C241T > C14408T > A23403G > C3037T > G3871T
+B.1.199	node_50	 > C241T > C14408T > A23403G > C3037T > C2939T
+B.1.139	node_51	 > C241T > C14408T > A23403G > C3037T > A696C
+B.1.91	node_52	 > C241T > C14408T > A23403G > C3037T > G24077T
+B.1.350	node_53	 > C241T > C14408T > A23403G > C3037T > G25563T
+B.1.216	node_267	 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G
+B.1.221	node_268	 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
+B.1.525	node_272	 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T
+B.1.222	node_273	 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A
+B.1.379	node_274	 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T
+B.1.182	node_275	 > C241T > C14408T > A23403G > C3037T > A20268G
+B.1.5	node_341	 > C241T > C14408T > A23403G > C3037T > C15324T
+B.1.215	node_359	 > C241T > C14408T > A23403G > C3037T > G3831A
+B.1.177.24	node_360	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T
+B.1.8	node_394	 > C241T > C14408T > A23403G > C3037T > A24862G
+B.1.179	node_395	 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T
+B.1.81	node_396	 > C241T > C14408T > A23403G > C3037T > C1909T
+B.1.201	node_397	 > C241T > C14408T > A23403G > C3037T > C2940T
+B.1.395	node_398	 > C241T > C14408T > A23403G > C3037T > C6990T
+B.1.384	node_400	 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T
+B.1.67	node_401	 > C241T > C14408T > A23403G > C3037T > T26512C
+B.1.98	node_402	 > C241T > C14408T > A23403G > C3037T > C25350T
+B.1.76	node_403	 > C241T > C14408T > A23403G > C3037T > T17835C
+B.1.383	node_404	 > C241T > C14408T > A23403G > C3037T > A25575C
+B.1.142	node_405	 > C241T > C14408T > A23403G > C3037T > C14741T
+B.1.131	node_406	 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T
+B.1.376	node_407	 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T
+B.1.23	node_408	 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T
+B.1.153	node_412	 > C241T > C14408T > A23403G > C3037T > G14580T
+B.1.113	node_413	 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T
+B.1.70	node_414	 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C
+B.1.145	node_415	 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A
+B.1.197	node_416	 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C
+B.1.143	node_417	 > C241T > C14408T > A23403G > C3037T > C4084T
+B.1.187	node_418	 > C241T > C14408T > A23403G > C3037T > A544G,C17104T
+B.1.414	node_419	 > C241T > C14408T > A23403G > C3037T > G20275A
+B.1.93	node_420	 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T
+B.1.206	node_421	 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T
+B.1.390	node_422	 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T
+B.1.69	node_423	 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T
+B.1.77	node_424	 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A
+B.1.78	node_425	 > C241T > C14408T > A23403G > C3037T > G29422T
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+B.1.195	node_653	 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T
+B.1.1.291	node_654	 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T
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+B.1.391	node_32	 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T
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+B.1.1.67	node_615	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T
+B.1.1.10	node_616	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A
+20I/501Y.V1	node_618	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
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+B.1.1.25	node_621	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T
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+B.1.1.96	node_628	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C
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+B.1.1.263	node_650	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G
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+B.1.36.28	node_226	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
+B.1.36.17	node_227	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T
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+B.1.36.21	node_230	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T
+B.1.36.26	node_231	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T
+20A.EU2	node_240	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T
+B.1.258.14	node_334	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T
+B.1.258.2	node_336	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T
+B.1.258.3	node_338	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T
+B.1.177.6	node_370	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T
+B.1.177.12	node_371	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T
+B.1.177.5	node_372	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T
+B.1.177.7	node_373	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T
+B.1.177.8	node_374	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T
+N.1	node_545	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T
+N.4	node_546	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G
+N.3	node_547	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T
+B.1.258.16	node_321	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T
+G.1	node_337	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T
+M.1	node_517	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T
+B.1.160.7	node_242	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T >  > C556T,C23525T
+B.1.258.6	node_324	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T
+B.1.258.7	node_325	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T
+B.1.258.10	node_327	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G
+B.1.258.12	node_328	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A
+B.1.258.17	node_333	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T
+B.1.258.4	node_331	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T
+B.1.258.5	node_332	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
diff -r 000000000000 -r 359daa4b6d10 test-data/test_13_path_mutations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_13_path_mutations.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,138 @@
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_13_sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_13_sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,138 @@
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_14_all_paths.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_14_all_paths.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1935 @@
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_14_path_clades.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_14_path_clades.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,623 @@
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+B.1.14	node_664	 > C25692T
+B.27	node_665	 > G29032A
+B.19	node_666	 > C10277T
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+B.10	node_698	 > C6696T
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+B.23	node_6	 > C20270T > A29683T
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+B.40	node_20	 > C14805T,G26144T > A2480G,C2558T
+B.30	node_21	 > C14805T,G26144T > A4236G,T25655C
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+B.45	node_672	 > C28854T > C12710T
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+B.4.4	node_700	 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C
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+B.1.105	node_45	 > C241T > C14408T > A23403G > C3037T > G28514T
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+B.1.103	node_47	 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T
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+B.1.378	node_49	 > C241T > C14408T > A23403G > C3037T > G3871T
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+B.1.91	node_52	 > C241T > C14408T > A23403G > C3037T > G24077T
+B.1.350	node_53	 > C241T > C14408T > A23403G > C3037T > G25563T
+B.1.216	node_267	 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G
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+B.1.525	node_272	 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T
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+B.1.392	node_42	 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G
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+B.1.320	node_107	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A
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+B.1.1.255	node_485	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T
+B.1.1.254	node_486	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T
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+B.1.1.274	node_489	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T
+B.1.1.180	node_490	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C
+B.1.1.286	node_491	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A
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+B.1.1.95	node_493	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T
+B.1.1.186	node_494	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T
+B.1.1.275	node_495	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A
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+B.1.1.83	node_497	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T
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+B.1.1.298	node_510	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C15656T,C25936T
+B.1.1.270	node_511	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T
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+B.1.1.43	node_552	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G26615T
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+B.1.1.164	node_555	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A
+B.1.1.200	node_556	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T
+B.1.1.137	node_557	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T
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+B.1.1.133	node_559	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G
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+B.1.1.297	node_562	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C
+B.1.1.198	node_563	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T
+B.1.1.97	node_564	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G
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+B.1.1.237	node_566	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T
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+B.1.1.115	node_571	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C
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+B.1.173	node_578	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A
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+B.1.1.59	node_588	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T
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+B.1.36.16	node_233	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T
+B.1.36.9	node_234	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A
+B.1.36.24	node_235	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C
+B.1.36.12	node_236	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T
+B.1.36.10	node_237	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T
+B.1.471	node_246	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T
+B.1.472	node_247	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T
+B.1.258	node_319	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A
+B.1.177.21	node_368	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A
+B.1.177.22	node_369	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T
+B.1.177.2	node_377	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G
+B.1.177.3	node_378	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T
+B.1.177.4	node_379	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T
+B.1.1.289	node_433	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A
+B.1.1.2	node_434	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C
+B.1.316	node_438	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C
+R.2	node_443	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C
+20J/501Y.V3	node_478	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C
+P.2	node_480	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T
+B.1.1.143	node_481	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T
+C.3	node_502	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T
+C.14	node_503	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T
+C.13	node_504	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G
+C.1	node_505	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T
+C.16	node_506	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T
+C.5	node_507	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C
+C.2	node_508	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T
+C.4	node_509	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T
+B.1.1.294	node_515	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C
+B.1.1.293	node_518	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T
+B.1.1.50	node_523	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T
+B.1.1.209	node_524	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A
+B.1.1.47	node_526	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T
+B.1.1.284	node_527	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T
+B.1.1.179	node_533	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T
+B.1.146	node_573	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T
+B.1.429	node_138	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T
+B.1.36.1	node_225	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T
+B.1.36.28	node_226	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
+B.1.36.17	node_227	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T
+B.1.36.27	node_228	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
+B.1.36.21	node_230	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T
+B.1.36.26	node_231	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T
+20A.EU2	node_240	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T
+B.1.258.14	node_334	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T
+B.1.258.2	node_336	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T
+B.1.258.3	node_338	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T
+B.1.177.6	node_370	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T
+B.1.177.12	node_371	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T
+B.1.177.5	node_372	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T
+B.1.177.7	node_373	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T
+B.1.177.8	node_374	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T
+N.1	node_545	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T
+N.4	node_546	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G
+N.3	node_547	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T
+B.1.258.16	node_321	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T
+G.1	node_337	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T
+M.1	node_517	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T
+B.1.160.7	node_242	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T >  > C556T,C23525T
+B.1.258.6	node_324	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T
+B.1.258.7	node_325	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T
+B.1.258.10	node_327	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G
+B.1.258.12	node_328	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A
+B.1.258.17	node_333	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T
+B.1.258.4	node_331	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T
+B.1.258.5	node_332	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
diff -r 000000000000 -r 359daa4b6d10 test-data/test_14_path_mutations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_14_path_mutations.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1096 @@
+England/BRIS-1853249/2020|20-04-02	node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T 
+Wales/PHWC-25B04/2020|20-03-24	node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G 
+NPL/61-TW/2020|MT072688.1|20-01-13	node_2:C24034T 
+Wales/LIVE-A6831/2020|20-03-16	node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C 
+Scotland/EDB1317/2020|20-04-09	node_4:C7423T Scotland/EDB1317/2020|20-04-09:G4207A,T7423C 
+Scotland/EDB354/2020|20-03-30	node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C 
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+DP0191/2020|LC570980.1|20-02-15	node_9:C29635T DP0191/2020|LC570980.1|20-02-15:A3854G 
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+England/BRIS-1258A2/2020|20-03-29	node_665:G29032A England/BRIS-1258A2/2020|20-03-29:C6696T,C9096T,C29754T 
+England/SHEF-BFEBB/2020|20-03-24	node_665:G29032A England/SHEF-BFEBB/2020|20-03-24:C11747T,T24364G 
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+England/LIVE-9E66F/2020|20-04-10	node_698:C6696T England/LIVE-9E66F/2020|20-04-10:C7765T,G10256T 
+Scotland/CVR705/2020|20-03-26	node_698:C6696T Scotland/CVR705/2020|20-03-26:C11001T,G17122T 
+England/SHEF-BFF21/2020|20-03-25	node_5:C20270T node_6:A29683T node_7:A18671G 
+England/LIVE-A4C46/2020|20-03-12	node_5:C20270T node_6:A29683T England/LIVE-A4C46/2020|20-03-12:G431A,G26754A,C28725T 
+Switzerland/100159/2020|LR884273.1|20-03-16	node_10:C14805T,G26144T node_11:T17247C node_12:C12400T Switzerland/100159/2020|LR884273.1|20-03-16:C16995T 
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+USA/MD-MDH-0664/2021|MW524034.1|21-01-04	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_437:C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T USA/MD-MDH-0664/2021|MW524034.1|21-01-04:G8015A,C9803T,C25797T 
+England/MILK-A79D10/2020|20-10-15	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_458:G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T England/MILK-A79D10/2020|20-10-15:C4113T,T17214C,C19324A,G28044T 
+England/PHEC-148F95/2020|20-10-15	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_458:G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T England/PHEC-148F95/2020|20-10-15:C2644T,C9319T,G13348T,C19113A 
+England/MILK-A180DE/2020|20-10-01	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_465:G24781T,G29706T node_466:A20742C,C28087T,C28310T,A29521T,G29645T,T29706G England/MILK-A180DE/2020|20-10-01:A4764G,C21952T,G26257A 
+England/NORW-222D0F/2020|20-12-20	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_476:G25088T node_479:C12053T node_480:C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T England/NORW-222D0F/2020|20-12-20:C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T 
+England/MILK-F72F49/2021|21-01-05	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_476:G25088T node_479:C12053T node_480:C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T England/MILK-F72F49/2021|21-01-05:C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T 
+England/ALDP-94DD07/2020|20-06-19	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_502:G2447T,G22199T England/ALDP-94DD07/2020|20-06-19:G3164T,C7528T,G20569T,C29625T 
+England/ALDP-49EC3C/2020|20-05-20	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_502:G2447T,G22199T England/ALDP-49EC3C/2020|20-05-20:G29392T,C29541T 
+PER/covper024/2020|MW030255.1|20-07-04	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_503:G29179T PER/covper024/2020|MW030255.1|20-07-04:C17436T,G27478T 
+PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_503:G29179T PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08:A10323G,G27160T 
+PER/covper011/2020|MW030242.1|20-07-04	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_504:A21131G PER/covper011/2020|MW030242.1|20-07-04:C3768T,C14265T,G17721T,C27213T,C27513T 
+PER/covper040/2020|MW030271.1|20-05-05	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_504:A21131G PER/covper040/2020|MW030271.1|20-05-05:C12854T,G20752T 
+England/MILK-B1553B/2020|20-10-23	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_505:C18747T England/MILK-B1553B/2020|20-10-23:C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A 
+England/MILK-66F889/2020|20-07-03	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_505:C18747T England/MILK-66F889/2020|20-07-03:G14547A,G14869A,A24879G,C29421T 
+England/QEUH-96BAA2/2020|20-08-14	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_508:T8323C,C10369T,T14345C,T15437C,G18292T,C25624T England/QEUH-96BAA2/2020|20-08-14:G1042T,C8895T,G25250T 
+Wales/ALDP-B19FFD/2020|20-11-01	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_508:T8323C,C10369T,T14345C,T15437C,G18292T,C25624T Wales/ALDP-B19FFD/2020|20-11-01:G922T,T10369C,A23064C,G23608T,C28453T,C29642T 
+SRB/NS19622-16-06/2020|MW327528.1|20-06-15	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_509:G24794T 
+PER/covper018/2020|MW030249.1|20-07-03	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_509:G24794T PER/covper018/2020|MW030249.1|20-07-03:G3755T,G11552T,A28356G 
+England/CAMC-C3E586/2020|20-12-10	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_518:C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T England/CAMC-C3E586/2020|20-12-10:C3736T,C6336T,G19735T,G23611T,C26735T,C26858T 
+England/CAMC-DE5550/2020|20-12-29	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_518:C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T England/CAMC-DE5550/2020|20-12-29:G6320T,C10582T,C12194T,C25603T 
+Japan/TKYE630414_2020/2020|LC593818.1|20-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_521:C313T node_536:C8917T,C18167T,G21518T,G28975T Japan/TKYE630414_2020/2020|LC593818.1|20-08:G27604A,C29679T 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_14_sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_14_sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1096 @@
+England/BRIS-1853249/2020|20-04-02
+Wales/PHWC-25B04/2020|20-03-24
+NPL/61-TW/2020|MT072688.1|20-01-13
+Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB1317/2020|20-04-09
+Scotland/EDB354/2020|20-03-30
+England/SHEF-BFF8B/2020|20-03-25
+England/LCST-24D7202/2020|20-06-22
+England/SHEF-BFFC7/2020|20-03-25
+England/PHEC-1E01E/2020|20-04-03
+DP0476/2020|LC571003.1|20-02-16
+DP0191/2020|LC570980.1|20-02-15
+England/LIVE-A5D06/2020|20-03-17
+England/LIVE-A065B/2020|20-05-27
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+NED/NB02_13KS/2020|MT457397.1|20-04-29
+USA/CA-QDX-1986/2020|MW190732.1|20-03-18
+USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+USA/CA-CZB-1015/2020|MT438733.1|20-04-22
+USA/CA-CZB-1073/2020|MT449664.1|20-04-21
+England/BRIS-1258A2/2020|20-03-29
+England/SHEF-BFEBB/2020|20-03-24
+USA/CA-CZB-1041/2020|MT438759.1|20-04-22
+USA/CA-CZB-1051/2020|MT449644.1|20-04-06
+England/LIVE-9E66F/2020|20-04-10
+Scotland/CVR705/2020|20-03-26
+England/SHEF-BFF21/2020|20-03-25
+England/LIVE-A4C46/2020|20-03-12
+Switzerland/100159/2020|LR884273.1|20-03-16
+England/EXET-135818/2020|20-04-11
+France/40002VJ/2020|MT470179.1|20-03
+Wales/PHWC-310CA/2020|20-04-11
+Scotland/GCVR-171160/2020|20-03-26
+England/BRIS-130E2A/2020|20-03-24
+USA/WI-UW-298/2020|MT706406.1|20-04-13
+USA/WI-UW-314/2020|MT706422.1|20-04-16
+USA/WI-UW-325/2020|MT706432.1|20-04-24
+USA/WI-UW-290/2020|MT706398.1|20-04-08
+Scotland/CVR3488/2020|20-05-12
+Scotland/CVR780/2020|20-03-27
+Scotland/EDB5629/2020|20-03-24
+HKG/HKU-904a/2020|MT365032.1|20-01-30
+Scotland/EDB5040/2020|20-04-02
+England/LOND-126031F/2020|20-03-15
+Scotland/EDB046/2020|20-03-15
+England/BRIS-12EEB6/2020|20-04-22
+Scotland/EDB199/2020|20-03-26
+England/CAMB-74A09/2020|20-03-18
+England/ALDP-9EE3AC/2020|20-05-06
+USA/WA3-UW1/2020|MT163716.1|20-02-27
+SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29
+England/ALDP-52C0FA/2020|20-06-01
+England/LIVE-9D7D6/2020|20-04-15
+Japan/TKYE63557_2020/2020|LC581365.1|20-03
+Japan/TKYE64688_2020/2020|LC581375.1|20-03
+USA/CA-QDX-33/2020|MT614459.1|20-03-15
+USA/DC-HP00063/2020|MT646075.1|20-03-13
+England/PHEC-1A601/2020|20-03-04
+England/PHEC-2275E/2020|20-06-22
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16
+USA/NY-QDX-1969/2020|MW190709.1|20-03-15
+Wales/PHWC-285F4/2020|20-04-01
+England/BRIS-130965/2020|20-04-13
+Scotland/CVR44/2020|20-03-13
+Scotland/CVR839/2020|20-03-27
+Scotland/GCVR-170107/2020|20-03-23
+Scotland/CVR207/2020|20-03-18
+England/CAMB-8042A/2020|20-04-10
+England/CAMB-737B8/2020|20-03-30
+USA/WA-S885/2020|MT642386.1|20-04-22
+USA/UT-QDX-1870/2020|MW190618.1|20-03-16
+England/BRIS-1265AA/2020|20-04-10
+AUS/NT38/2020|MT641726.1|20
+England/BRIS-123965/2020|20-04-07
+IND/Isolate_9088/2020|MW555597.1|20-06-30
+England/BRIS-125347/2020|20-03-27
+IND/763/2020|MT577009.1|20
+England/CAMB-7772D/2020|20-03-31
+England/BRIS-12208F/2020|20-03-21
+Scotland/EDB1824/2020|20-04-16
+Spain/H12_46/2020|LR884009.1|20-04-08
+USA/MN-MDH-1475/2020|MT920008.1|20-03-23
+USA/CA-CZB-1615/2020|MT628267.1|20-04-14
+USA/FL-BPHL-0393/2020|MT757005.1|20-03-17
+Spain/R10_33/2020|LR884127.1|20-03-02
+AUS/VIC1255/2020|MT451830.1|20-04-11
+AUS/VIC1878/2020|MT745600.1|20-03-29
+England/NORT-284A9B/2020|20-03-25
+Scotland/CVR10/2020|20-03-10
+England/CAMB-75BD8/2020|20-03-29
+UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01
+USA/WI-UW-26/2020|MT706147.1|20-03-24
+USA/IL-QDX-2568/2020|MW191367.1|20-03-14
+USA/ID-QDX-1727/2020|MW190466.1|20-03-17
+USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30
+USA/IN-QDX-184/2020|MT786818.1|20-04-28
+USA/WI-UW-558/2020|MT750137.1|20-06-25
+AUS/VIC2260/2020|MT972173.1|20-06-22
+England/EXET-1358BE/2020|20-04-15
+USA/FL-BPHL-0553/2020|MT834693.1|20-06-30
+EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02
+USA/RI-CDC-0556/2020|MT304488.1|20-03-01
+Switzerland/100198/2020|LR884312.1|20-03-17
+England/NOTT-10E1B3/2020|20-03-19
+USA/WI-UW-37/2020|MT706158.1|20-03-22
+Scotland/CVR2927/2020|20-04-22
+Scotland/GCVR-173C30/2020|20-04-07
+USA/CA-CZB-2091/2020|MT750490.1|20-05-07
+Switzerland/140091/2020|LR824563.1|20-04-18
+England/BRIS-12755E/2020|20-04-22
+England/BRIS-12468B/2020|20-04-09
+England/NORW-E9DF7/2020|20-05-02
+Scotland/EDB156/2020|20-03-23
+Wales/PHWC-27B20/2020|20-03-30
+Wales/PHWC-2624A/2020|20-03-27
+Wales/PHWC-2BF8A/2020|20-04-02
+Wales/PHWC-29E43/2020|20-04-04
+England/LOND-D3534/2020|20-03-27
+England/PHEC-20C24/2020|20-04-21
+England/CAMB-7D2EA/2020|20-04-06
+England/LIVE-A63E5/2020|20-03-18
+Wales/PHWC-260C8/2020|20-03-26
+England/BRIS-12F969/2020|20-03-30
+England/PHEC-2083F/2020|20-04-13
+Wales/PHWC-16C6F0/2020|20-06-09
+Wales/PHWC-27461/2020|20-03-31
+Wales/PHWC-29F13/2020|20-04-01
+IND/GBRC99/2020|MT509504.1|20-05-06
+IND/GBRC31/2020|MT467247.1|20-04-29
+AUS/VIC1239/2020|MT451821.1|20-04-02
+AUS/VIC1282/2020|MW153048.1|20-04-08
+IND/GBRC128/2020|MT539172.1|20-05-02
+IND/GBRC123/2020|MT539176.1|20-05-02
+POL/PL_MCB_32/2020|MW273814.1|20-04-22
+POL/PL_MCB_75/2020|MW273857.1|20-04-16
+England/CAMB-7BED9/2020|20-04-04
+Netherlands/NA_302/2020|LR878041.1|20-04-01
+USA/WI-UW-1385/2020|MW035549.1|20-09-06
+USA/TX-DSHS-0975/2020|MW217385.1|20-06-16
+Northern_Ireland/NIRE-1022CB/2020|20-03-25
+Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27
+Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20
+GRC/202_32984/2020|MT459870.1|20-03-12
+USA/FHCRC-19442/2020|MW593677.1|20-07-30
+USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07
+Wales/PHWC-31CB7/2020|20-04-14
+Wales/PHWC-26D2B/2020|20-03-30
+MYS/188407/2020|MT372480.1|20-03-18
+AUS/VIC961/2020|MT451653.1|20-03-27
+Spain/R11/2020|LR884126.1|20-03-06
+Spain/LP19_4952/2020|LR884066.1|20-03-07
+USA/COVID20-0008/2020|MT764174.1|20-03-10
+USA/IL-CDC-IL2/2020|MT044257.1|20-01-28
+USA/CA-QDX-1421/2020|MW065371.1|20-03-18
+USA/CA-QDX-2080/2020|MW190832.1|20-03-19
+England/CAMB-76515/2020|20-03-29
+England/CAMB-1AE294/2020|20-04-27
+England/LEED-2A8D10/2020|20-03-31
+England/CAMB-1AC6F4/2020|20-04-21
+Scotland/EDB2049/2020|20-04-18
+England/CAMB-7EBDF/2020|20-04-07
+Scotland/CVR3417/2020|20-05-07
+Scotland/CVR1519/2020|20-04-03
+England/MILK-93B73B/2020|20-06-21
+England/MILK-9589F6/2020|20-06-15
+England/BRIS-128441/2020|20-04-16
+England/CAMB-7C39D/2020|20-04-13
+England/ALDP-50085E/2020|20-06-27
+England/PHEC-127E8/2020|20-03-28
+USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29
+USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29
+USA/FL-BPHL-0540/2020|MT834625.1|20-03-21
+CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02
+USA/CA-CZB-1434/2020|MT628140.1|20-03-25
+USA/VA-DCLS-0676/2020|MT911804.1|20-04
+USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09
+USA/MI-QDX-476/2020|MW064508.1|20-03-23
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14
+USA/CA-CZB-14951/2020|MW565126.1|20-06-06
+USA/WI-UW-1105/2020|MT929055.1|20-07-24
+USA/RML-22/2020|MW221270.1|20-08-30
+Scotland/CVR2931/2020|20-04-22
+Scotland/GCVR-172150/2020|20-03-30
+England/BRIS-124885/2020|20-03-24
+England/BRIS-122C4F/2020|20-04-02
+USA/WI-UW-1046/2020|MT928999.1|20-07-29
+USA/TX-DSHS-0409/2020|MW127871.1|20-06-01
+Scotland/CVR3054/2020|20-04-24
+England/MILK-95698F/2020|20-06-06
+England/CAMB-79ECC/2020|20-04-01
+USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09
+USA/AK-PHL414/2020|MT946886.1|20-06-03
+USA/AK-PHL689/2020|MW173160.1|20-06-29
+England/MILK-974596/2020|20-08-17
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_15_mutation_annotated_tree.pb
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_15_subtree.json
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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mutations":"C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T","sample":"Scotland/QEUH-A613BF/2020|20-10-13"},"mutations":{"nuc":["C1912T","C3619T","C4158T","G17259T","G21193T","C21846T","C25584T","C26060T","G27008T","G27827T"]}},"name":"Scotland/QEUH-A613BF/2020|20-10-13","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"country":{"value":"Scotland"},"date":{"value":"20-10-13"},"div":20,"mutation_of_interest":{"value":""}}}],"name":"node_524","node_attrs":{"MAT_Clade_0":{"value":"B.1.1.209"},"MAT_Clade_1":{"value":""},"div":10,"mutation_of_interest":{"value":""}}}],"name":"node_522","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"div":9,"mutation_of_interest":{"value":""}}}],"name":"node_521","node_attrs":{"MAT_Clade_0":{"value":"B.1.1.114"},"MAT_Clade_1":{"value":""},"div":8,"mutation_of_interest":{"value":""}}}],"name":"node_427","node_attrs":{"MAT_Clade_0":{"value":"B.1.1.119"},"MAT_Clade_1":{"value":""},"div":7,"mutation_of_interest":{"value":""}}}],"name":"node_28","node_attrs":{"MAT_Clade_0":{"value":"B.1.108"},"MAT_Clade_1":{"value":""},"div":4,"mutation_of_interest":{"value":""}}}],"name":"node_27","node_attrs":{"MAT_Clade_0":{"value":""},"MAT_Clade_1":{"value":""},"div":3,"mutation_of_interest":{"value":""}}}],"name":"node_26","node_attrs":{"MAT_Clade_0":{"value":"B.1"},"MAT_Clade_1":{"value":""},"div":2,"mutation_of_interest":{"value":"C241T"}}}],"name":"wrapper","node_attrs":{"div":0}},"version":"v2"}
diff -r 000000000000 -r 359daa4b6d10 test-data/test_15_subtree_no_genotype.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_15_subtree_no_genotype.vcf	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,3341 @@
+##fileformat=VCFv4.2
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+NC_045512v2	61	G61T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	66	C66A,C66T	C	A,T	.	.	AC=2,6;AN=1116
+NC_045512v2	83	T83C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	94	G94T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	96	C96T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	100	C100T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	105	G105T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	106	C106T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	125	C125T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	140	C140T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	147	C147T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	158	A158G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	160	G160T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	169	A169G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	174	G174T	G	T	.	.	AC=8;AN=1116
+NC_045512v2	181	T181C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	186	C186T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	187	A187G	A	G	.	.	AC=5;AN=1116
+NC_045512v2	199	G199T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	203	C203T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	204	G204T	G	T	.	.	AC=15;AN=1116
+NC_045512v2	208	G208T	G	T	.	.	AC=4;AN=1116
+NC_045512v2	209	T209C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	210	G210T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	222	C222T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	235	A235C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	241	C241T	C	T	.	.	AC=1116;AN=1116
+NC_045512v2	242	G242T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	245	C245T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	248	G248T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	271	G271T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	313	C313T	C	T	.	.	AC=39;AN=1116
+NC_045512v2	335	C335T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	337	C337T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	344	C344T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	346	C346T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	361	A361G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	370	G370T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	379	C379A,C379T	C	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	390	C390T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	401	C401T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	408	A408G	A	G	.	.	AC=4;AN=1116
+NC_045512v2	419	G419A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	443	G443A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	445	T445C	T	C	.	.	AC=52;AN=1116
+NC_045512v2	454	A454G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	466	C466T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	475	C475T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	476	A476G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	478	C478T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	487	G487A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	488	G488T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	489	A489G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	505	T505C	T	C	.	.	AC=3;AN=1116
+NC_045512v2	506	C506T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	511	T511C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	512	C512T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	521	G521T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	526	G526C,G526T	G	C,T	.	.	AC=1,1;AN=1116
+NC_045512v2	527	C527T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	533	G533A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	538	A538G	A	G	.	.	AC=3;AN=1116
+NC_045512v2	539	C539T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	541	C541T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	542	G542A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	544	A544G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	556	C556T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	569	G569A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	571	G571A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	583	C583T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	593	C593T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	595	T595C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	596	G596A,G596T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	601	C601T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	619	C619T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	621	G621A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	622	C622T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	625	G625T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	642	A642G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	643	C643T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	658	T658C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	669	G669T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	673	C673T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	675	G675T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	676	C676T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	680	G680A,G680T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	682	T682C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	683	C683T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	696	A696C	A	C	.	.	AC=2;AN=1116
+NC_045512v2	706	C706T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	713	G713A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	715	C715T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	716	A716G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	733	T733C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	749	A749G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	760	T760C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	761	A761G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	772	T772C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	775	C775T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	782	C782T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	790	T790C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	799	C799T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	815	C815T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	823	C823T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	829	C829T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	832	C832T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	833	T833C	T	C	.	.	AC=4;AN=1116
+NC_045512v2	835	C835T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	838	T838C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	840	G840A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	841	C841T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	842	C842T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	847	T847C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	854	C854T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	872	G872A,G872T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	875	C875T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	878	C878T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	882	C882T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	884	C884T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	900	C900T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	901	A901T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	913	C913T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	922	G922A,G922T	G	A,T	.	.	AC=2,3;AN=1116
+NC_045512v2	934	C934T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	936	C936T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	960	G960T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	961	T961C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	964	A964G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	974	G974A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	1005	A1005G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1042	G1042T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1059	C1059T	C	T	.	.	AC=233;AN=1116
+NC_045512v2	1060	C1060T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1063	C1063T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1076	C1076T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	1088	T1088C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1094	T1094C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	1096	A1096G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	1098	A1098C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	1122	C1122T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1135	G1135T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	1141	G1141A,G1141T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	1147	T1147C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1148	G1148T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1150	C1150T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1154	A1154G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	1163	A1163T	A	T	.	.	AC=9;AN=1116
+NC_045512v2	1169	T1169C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1170	C1170T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1171	T1171C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	1186	G1186A	G	A	.	.	AC=3;AN=1116
+NC_045512v2	1190	C1190T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1191	C1191A,C1191T	C	A,T	.	.	AC=2,2;AN=1116
+NC_045512v2	1194	A1194G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1210	G1210T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	1218	C1218T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1230	A1230G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1263	C1263T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1288	C1288T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	1291	A1291G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1298	G1298A	G	A	.	.	AC=4;AN=1116
+NC_045512v2	1302	C1302T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1306	G1306T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1319	G1319A	G	A	.	.	AC=3;AN=1116
+NC_045512v2	1323	G1323T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1325	G1325T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1333	T1333A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	1334	T1334A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	1338	G1338C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	1347	C1347T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1348	C1348T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1359	T1359C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1377	C1377T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1380	C1380T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1403	C1403T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1420	C1420T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	1427	C1427T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	1437	C1437T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	1438	T1438C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1457	C1457T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	1463	G1463A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	1464	G1464A	G	A	.	.	AC=5;AN=1116
+NC_045512v2	1471	C1471T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1489	C1489T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1495	G1495T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	1498	C1498T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1514	C1514T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1519	C1519T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1528	C1528T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1541	C1541T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1543	T1543A	T	A	.	.	AC=2;AN=1116
+NC_045512v2	1545	C1545T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1550	G1550A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	1589	G1589A,G1589T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	1590	G1590T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	1593	C1593T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	1594	C1594T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	1599	G1599T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	1601	C1601T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1610	A1610G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	1623	T1623C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1625	C1625T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1627	C1627T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1628	C1628A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	1630	A1630C	A	C	.	.	AC=2;AN=1116
+NC_045512v2	1659	G1659A,G1659T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	1663	C1663T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1673	A1673G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	1683	T1683C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1684	C1684T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1699	A1699G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1714	C1714T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1722	C1722T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1729	G1729A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	1734	C1734T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1738	G1738T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	1755	A1755G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1758	C1758T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1778	T1778C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1800	C1800A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	1801	A1801G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1807	A1807G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	1812	C1812T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1820	G1820A	G	A	.	.	AC=8;AN=1116
+NC_045512v2	1824	C1824T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1834	T1834C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1843	G1843A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	1847	T1847C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1848	C1848T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1863	T1863C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1866	A1866G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	1869	C1869T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1874	G1874T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	1882	G1882T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1884	C1884T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	1887	C1887T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1904	A1904G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	1908	T1908C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1909	C1909T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1912	C1912T	C	T	.	.	AC=9;AN=1116
+NC_045512v2	1914	G1914A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	1917	C1917T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1918	T1918C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	1921	T1921C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1925	A1925C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	1929	C1929T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1937	T1937C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	1938	C1938T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1943	C1943T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1947	T1947C	T	C	.	.	AC=8;AN=1116
+NC_045512v2	1957	G1957T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	1958	G1958A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	1960	C1960T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1962	C1962T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	1968	C1968T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	1973	C1973T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	1987	A1987G	A	G	.	.	AC=6;AN=1116
+NC_045512v2	1990	G1990T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	1997	C1997T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2003	C2003T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2018	A2018G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	2031	A2031G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2035	G2035T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2037	C2037T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2044	C2044T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2048	C2048T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2062	C2062T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	2065	C2065T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2072	G2072A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	2086	G2086T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	2104	A2104G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2106	C2106T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2113	C2113T	C	T	.	.	AC=10;AN=1116
+NC_045512v2	2130	A2130T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	2135	C2135T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2140	A2140G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2143	C2143T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2144	G2144T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2151	A2151G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2155	G2155T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2161	A2161G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	2164	G2164A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	2166	A2166G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2175	A2175G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2252	C2252A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	2258	G2258A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	2271	A2271G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2272	G2272A,G2272T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	2281	G2281A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2282	G2282A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	2285	A2285T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	2286	G2286A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2292	A2292C	A	C	.	.	AC=3;AN=1116
+NC_045512v2	2300	T2300C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	2305	G2305T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2324	G2324A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2334	C2334T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2340	C2340T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2342	A2342G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2358	C2358T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2388	C2388T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2395	C2395T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	2398	G2398A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2399	C2399T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2406	A2406G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2407	G2407C,G2407T	G	C,T	.	.	AC=1,2;AN=1116
+NC_045512v2	2416	C2416T	C	T	.	.	AC=35;AN=1116
+NC_045512v2	2419	A2419G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2433	C2433T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2445	C2445T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	2447	G2447T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	2453	C2453T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	2462	C2462A,C2462T	C	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	2466	A2466G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	2468	G2468A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2470	C2470T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2475	A2475G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	2480	A2480G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2484	T2484C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2488	C2488T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2494	G2494A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2509	C2509T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	2511	C2511T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2516	G2516T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2523	C2523T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	2525	G2525A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2526	A2526C,A2526G	A	C,G	.	.	AC=2,2;AN=1116
+NC_045512v2	2533	T2533C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2534	G2534T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2536	C2536T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	2537	T2537G	T	G	.	.	AC=2;AN=1116
+NC_045512v2	2545	T2545C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2549	G2549A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2570	C2570T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2576	A2576T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	2578	T2578C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2597	T2597C	T	C	.	.	AC=4;AN=1116
+NC_045512v2	2623	C2623T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2635	G2635A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2638	C2638T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2641	A2641G	A	G	.	.	AC=4;AN=1116
+NC_045512v2	2644	C2644A,C2644T	C	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	2647	A2647G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2655	A2655C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	2658	A2658G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2659	G2659A,G2659T	G	A,T	.	.	AC=2,5;AN=1116
+NC_045512v2	2664	G2664A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2668	C2668T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2679	A2679G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2692	A2692T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	2698	T2698C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2706	C2706T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	2710	C2710T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2749	C2749T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2756	A2756G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2764	G2764T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2775	A2775G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	2782	G2782T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2788	C2788T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2805	A2805G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2815	T2815C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2819	G2819T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2830	G2830A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	2836	C2836T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	2841	C2841T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2842	C2842T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2845	T2845C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	2848	A2848G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2867	G2867T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2869	A2869G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	2871	A2871C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	2872	T2872C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2878	C2878T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2880	C2880T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2885	G2885A,G2885T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	2898	C2898T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2900	G2900T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	2902	C2902T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2903	A2903G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2910	C2910T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2918	C2918T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2919	C2919T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2924	T2924C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	2937	C2937T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	2939	C2939T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	2940	C2940T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	2945	G2945A	G	A	.	.	AC=2;AN=1116
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+NC_045512v2	2948	A2948G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	2983	C2983T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	2995	G2995T	G	T	.	.	AC=4;AN=1116
+NC_045512v2	3011	T3011C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	3015	C3015T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3037	C3037T	C	T	.	.	AC=1112;AN=1116
+NC_045512v2	3041	C3041A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	3044	C3044T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	3118	T3118C	T	C	.	.	AC=2;AN=1116
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+NC_045512v2	3141	C3141A,C3141T	C	A,T	.	.	AC=1,1;AN=1116
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+NC_045512v2	3340	G3340T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	3366	T3366C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3373	C3373A	C	A	.	.	AC=10;AN=1116
+NC_045512v2	3397	C3397T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3403	G3403T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	3411	C3411T	C	T	.	.	AC=9;AN=1116
+NC_045512v2	3413	A3413T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	3419	G3419A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	3426	C3426T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	3429	C3429T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3431	G3431T	G	T	.	.	AC=4;AN=1116
+NC_045512v2	3433	G3433A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	3487	C3487T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3496	G3496T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	3499	T3499C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3511	C3511T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3527	G3527A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	3535	C3535T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3536	A3536G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	3587	C3587T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3602	C3602T	C	T	.	.	AC=8;AN=1116
+NC_045512v2	3615	T3615C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	3616	T3616A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	3619	C3619T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3622	C3622T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	3634	C3634T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3638	G3638A,G3638T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	3653	C3653T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3689	G3689A	G	A	.	.	AC=3;AN=1116
+NC_045512v2	3694	T3694C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3695	C3695T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3698	C3698T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3712	A3712G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	3736	C3736T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	3737	C3737T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	3738	C3738T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3740	A3740G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	3745	T3745C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3755	G3755T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	3766	T3766C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3768	C3768T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	3776	A3776G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	3777	C3777T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3801	A3801G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	3811	C3811T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	3817	C3817T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3828	C3828T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	3831	G3831A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	3841	A3841T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	3843	T3843C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3849	G3849A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	3852	A3852T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	3867	A3867T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	3871	G3871T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	3873	T3873C,T3873G	T	C,G	.	.	AC=2,1;AN=1116
+NC_045512v2	3874	C3874T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	3880	G3880A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	3884	C3884T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3885	C3885T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	3892	G3892T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	3896	G3896T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	3939	G3939A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	3952	T3952C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	3959	A3959G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	3961	C3961T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	3969	G3969A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	3994	G3994A,G3994T	G	A,T	.	.	AC=3,1;AN=1116
+NC_045512v2	4002	C4002T	C	T	.	.	AC=20;AN=1116
+NC_045512v2	4006	G4006T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	4012	C4012T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	4033	T4033C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	4044	A4044C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	4048	C4048T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	4057	T4057C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	4084	C4084T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	4105	G4105A,G4105T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	4113	C4113T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	4125	T4125C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	4138	T4138G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	4143	A4143G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	4148	G4148T	G	T	.	.	AC=1;AN=1116
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+NC_045512v2	4158	C4158T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	4181	G4181T	G	T	.	.	AC=2;AN=1116
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+NC_045512v2	4197	A4197G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	4198	A4198C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	4207	G4207T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	4208	A4208C	A	C	.	.	AC=2;AN=1116
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+NC_045512v2	5548	C5548T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5554	G5554T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	5572	G5572A,G5572T	G	A,T	.	.	AC=1,6;AN=1116
+NC_045512v2	5575	C5575T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5578	G5578A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	5585	C5585A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	5622	C5622T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5629	G5629T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	5648	A5648C	A	C	.	.	AC=2;AN=1116
+NC_045512v2	5650	A5650G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	5653	T5653C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	5674	T5674C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	5691	C5691T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5694	C5694T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5695	A5695G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	5700	C5700A	C	A	.	.	AC=6;AN=1116
+NC_045512v2	5716	G5716A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	5717	C5717T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	5724	C5724T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	5730	C5730T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	5747	A5747G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	5758	C5758T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	5777	C5777T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	5780	A5780G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	5785	T5785A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	5796	C5796T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5806	C5806T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	5812	C5812T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	5855	A5855G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	5877	A5877G	A	G	.	.	AC=3;AN=1116
+NC_045512v2	5878	C5878T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	5884	C5884T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	5893	C5893T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	5907	C5907T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	5924	G5924A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	5934	C5934T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	5950	G5950A,G5950T	G	A,T	.	.	AC=2,2;AN=1116
+NC_045512v2	5958	A5958G	A	G	.	.	AC=1;AN=1116
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+NC_045512v2	5986	C5986T	C	T	.	.	AC=6;AN=1116
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+NC_045512v2	5999	A5999G	A	G	.	.	AC=1;AN=1116
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+NC_045512v2	7843	C7843T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	10448	C10448T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	10450	C10450T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10456	C10456T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10458	C10458T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10474	C10474T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	10480	T10480C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	10507	C10507T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	10513	T10513C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	10523	G10523C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	10525	C10525T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10540	G10540A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	10552	A10552G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	10561	T10561C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	10565	G10565A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	10582	C10582T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	10594	C10594T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10615	C10615T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10626	C10626T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	10631	G10631T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	10641	C10641T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	10645	C10645T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	10667	T10667G	T	G	.	.	AC=2;AN=1116
+NC_045512v2	10681	C10681T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	10688	G10688T	G	T	.	.	AC=2;AN=1116
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+NC_045512v2	10705	G10705T	G	T	.	.	AC=2;AN=1116
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+NC_045512v2	10781	A10781G	A	G	.	.	AC=1;AN=1116
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+NC_045512v2	12880	C12880T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	12892	G12892T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	12907	G12907A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	12911	G12911A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	12915	C12915T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	12923	C12923T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	12925	T12925C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	12964	A12964G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	12988	G12988T	G	T	.	.	AC=14;AN=1116
+NC_045512v2	13006	T13006C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	13009	C13009T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	13019	C13019T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13051	C13051T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13059	C13059T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13105	C13105T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	13115	C13115T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	13122	G13122A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	13168	C13168T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13176	C13176T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13201	G13201T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	13247	C13247T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13252	C13252T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13261	C13261T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	13264	C13264T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	13270	T13270C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	13274	C13274T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	13315	A13315G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	13329	C13329T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13335	C13335T	C	T	.	.	AC=5;AN=1116
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+NC_045512v2	13378	C13378T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	13397	G13397A,G13397T	G	A,T	.	.	AC=1,1;AN=1116
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+NC_045512v2	13458	C13458T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13459	G13459T	G	T	.	.	AC=2;AN=1116
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+NC_045512v2	13502	C13502T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	13514	G13514A	G	A	.	.	AC=2;AN=1116
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+NC_045512v2	13536	C13536T	C	T	.	.	AC=20;AN=1116
+NC_045512v2	13554	C13554T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	13568	C13568T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	13620	C13620T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	13665	C13665T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	15982	G15982T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	15984	A15984T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	16014	G16014A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	16017	C16017T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16044	A16044T	A	T	.	.	AC=3;AN=1116
+NC_045512v2	16045	C16045T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16049	C16049T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16059	T16059C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16062	T16062C	T	C	.	.	AC=3;AN=1116
+NC_045512v2	16068	G16068T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16072	G16072T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16075	G16075T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16077	T16077C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16084	C16084T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16085	A16085G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16089	G16089A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	16101	C16101T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16110	G16110A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	16111	C16111T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16114	C16114T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16117	G16117T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16138	T16138C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16148	A16148G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16163	C16163T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16169	A16169G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16173	C16173T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16176	T16176C	T	C	.	.	AC=4;AN=1116
+NC_045512v2	16178	C16178T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16179	A16179G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	16197	G16197T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16213	T16213C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16217	C16217T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16230	C16230T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16242	T16242A	T	A	.	.	AC=2;AN=1116
+NC_045512v2	16260	C16260T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	16289	C16289T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16293	C16293T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	16329	C16329T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	16332	C16332T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16362	C16362T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16376	C16376T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16377	G16377T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16393	C16393T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	16394	C16394T	C	T	.	.	AC=8;AN=1116
+NC_045512v2	16425	T16425G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	16428	C16428T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	16456	T16456C,T16456G	T	C,G	.	.	AC=4,1;AN=1116
+NC_045512v2	16457	C16457T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16469	C16469T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16479	T16479C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	16521	T16521C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16541	A16541G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16568	C16568A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	16575	C16575T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16616	C16616T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16626	C16626T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16632	T16632C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16638	A16638G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16647	G16647T	G	T	.	.	AC=8;AN=1116
+NC_045512v2	16650	C16650T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	16653	A16653G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16694	C16694A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	16695	T16695G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	16733	C16733T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	16741	G16741A,G16741T	G	A,T	.	.	AC=2,2;AN=1116
+NC_045512v2	16743	T16743C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	16752	T16752G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	16762	C16762T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	16766	A16766G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	16813	G16813A	G	A	.	.	AC=6;AN=1116
+NC_045512v2	16840	A16840C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	16846	G16846T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	16852	G16852T	G	T	.	.	AC=3;AN=1116
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+NC_045512v2	16855	G16855T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	16861	G16861T	G	T	.	.	AC=1;AN=1116
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+NC_045512v2	16889	A16889G	A	G	.	.	AC=6;AN=1116
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+NC_045512v2	18662	G18662C	G	C	.	.	AC=2;AN=1116
+NC_045512v2	18670	G18670A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	18671	A18671C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	18674	G18674A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	18676	C18676T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	18687	C18687T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	18693	C18693A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	18695	C18695T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	18713	C18713T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	18723	T18723C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	18744	C18744T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	18747	C18747T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	18756	G18756T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	18788	C18788T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	18803	G18803T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	18807	C18807T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	18816	G18816T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	18818	A18818G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	18840	A18840G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	18846	A18846G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	18859	G18859T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	18877	C18877T	C	T	.	.	AC=98;AN=1116
+NC_045512v2	18880	G18880T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	18898	G18898T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	18902	A18902C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	18904	C18904T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	18907	G18907T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	18928	C18928T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	18960	G18960T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	18972	G18972A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	18974	T18974G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	18978	A18978G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	18981	C18981T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	18984	G18984T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	18985	G18985T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	18989	T18989C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	18998	C18998T	C	T	.	.	AC=18;AN=1116
+NC_045512v2	19009	G19009T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19011	C19011T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19029	C19029T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19032	C19032T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19041	C19041T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19056	G19056T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19066	C19066A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	19072	G19072T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19080	A19080G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	19086	G19086T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	19089	C19089T	C	T	.	.	AC=3;AN=1116
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+NC_045512v2	19113	C19113A,C19113T	C	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	19116	A19116G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	19117	G19117T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19137	A19137T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	19143	T19143C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	19145	C19145T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	19151	C19151T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19160	C19160T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19164	C19164T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	19167	A19167G	A	G	.	.	AC=4;AN=1116
+NC_045512v2	19170	C19170T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	19174	G19174T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19180	G19180T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19185	C19185T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	19186	C19186T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	19232	T19232C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	19254	G19254T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19264	C19264T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19269	C19269T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	19273	C19273T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	19274	C19274A	C	A	.	.	AC=4;AN=1116
+NC_045512v2	19324	C19324A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	19341	T19341C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	19366	C19366T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	19367	C19367T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19374	C19374T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19386	C19386T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	19398	G19398A,G19398T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	19454	C19454T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19473	T19473C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	19476	A19476G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	19480	G19480A,G19480T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	19488	C19488T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	19509	G19509A	G	A	.	.	AC=4;AN=1116
+NC_045512v2	19524	C19524T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	19527	T19527C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	19538	T19538C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	19540	A19540G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	19542	G19542T	G	T	.	.	AC=8;AN=1116
+NC_045512v2	19545	C19545T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19549	G19549T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	19572	C19572T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19602	C19602T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	19610	C19610T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	19635	G19635T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19648	G19648T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	19650	A19650G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	19655	A19655G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	19656	G19656A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	19670	G19670A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	19674	A19674G	A	G	.	.	AC=2;AN=1116
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+NC_045512v2	19698	C19698T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	19718	C19718T	C	T	.	.	AC=5;AN=1116
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+NC_045512v2	19743	A19743C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	19763	C19763T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	19806	C19806T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	19816	G19816A,G19816T	G	A,T	.	.	AC=1,4;AN=1116
+NC_045512v2	19821	A19821G	A	G	.	.	AC=1;AN=1116
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+NC_045512v2	19846	G19846A	G	A	.	.	AC=1;AN=1116
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+NC_045512v2	21291	T21291C	T	C	.	.	AC=1;AN=1116
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+NC_045512v2	23191	C23191T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	23202	C23202T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	23207	A23207G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	23208	C23208T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	23220	C23220A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	23227	T23227C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	23233	A23233G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	23234	A23234G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	23248	C23248T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	23255	T23255C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	23266	C23266T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	23271	C23271A	C	A	.	.	AC=4;AN=1116
+NC_045512v2	23287	T23287C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	23296	T23296C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	23299	A23299G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	23302	G23302A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	23309	G23309C	G	C	.	.	AC=2;AN=1116
+NC_045512v2	23311	G23311C,G23311T	G	C,T	.	.	AC=6,1;AN=1116
+NC_045512v2	23324	A23324T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	23362	A23362T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	23401	G23401A,G23401T	G	A,T	.	.	AC=3,1;AN=1116
+NC_045512v2	23403	A23403G	A	G	.	.	AC=1114;AN=1116
+NC_045512v2	23406	T23406C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	23422	C23422T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	23426	G23426C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	23430	C23430T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	23438	G23438T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	23441	G23441A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	23453	C23453T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	23480	T23480G	T	G	.	.	AC=2;AN=1116
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+NC_045512v2	23503	A23503G,A23503T	A	G,T	.	.	AC=1,1;AN=1116
+NC_045512v2	23506	C23506T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	23525	C23525T	C	T	.	.	AC=9;AN=1116
+NC_045512v2	23534	A23534T	A	T	.	.	AC=1;AN=1116
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+NC_045512v2	23548	T23548C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	23551	C23551T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	23557	C23557T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	23595	C23595T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	23605	T23605C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	23608	G23608T	G	T	.	.	AC=1;AN=1116
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+NC_045512v2	23612	G23612A	G	A	.	.	AC=1;AN=1116
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+NC_045512v2	23664	C23664T	C	T	.	.	AC=7;AN=1116
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+NC_045512v2	25429	G25429A,G25429T	G	A,T	.	.	AC=1,26;AN=1116
+NC_045512v2	25433	C25433T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	25437	G25437T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	25440	G25440A,G25440T	G	A,T	.	.	AC=2,2;AN=1116
+NC_045512v2	25442	A25442T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	25444	G25444A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	25445	G25445T	G	T	.	.	AC=4;AN=1116
+NC_045512v2	25448	A25448G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	25456	G25456T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25459	G25459T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25460	C25460T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25466	C25466A,C25466T	C	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	25471	G25471C,G25471T	G	C,T	.	.	AC=1,2;AN=1116
+NC_045512v2	25473	T25473C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	25479	T25479A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	25494	G25494T	G	T	.	.	AC=8;AN=1116
+NC_045512v2	25504	C25504G	C	G	.	.	AC=1;AN=1116
+NC_045512v2	25505	A25505C,A25505G	A	C,G	.	.	AC=2,6;AN=1116
+NC_045512v2	25510	T25510A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	25511	C25511T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	25516	C25516T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25517	C25517T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25519	T25519G	T	G	.	.	AC=2;AN=1116
+NC_045512v2	25521	C25521T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25523	G25523T	G	T	.	.	AC=4;AN=1116
+NC_045512v2	25524	A25524G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	25528	C25528T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	25538	G25538T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25544	C25544T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25546	C25546T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	25552	G25552T	G	T	.	.	AC=8;AN=1116
+NC_045512v2	25553	C25553T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	25555	G25555T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25563	G25563C,G25563T	G	C,T	.	.	AC=2,374;AN=1116
+NC_045512v2	25570	T25570C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	25572	C25572T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25575	A25575C,A25575G	A	C,G	.	.	AC=2,1;AN=1116
+NC_045512v2	25577	T25577C,T25577G	T	C,G	.	.	AC=3,1;AN=1116
+NC_045512v2	25584	C25584A,C25584T	C	A,T	.	.	AC=1,3;AN=1116
+NC_045512v2	25595	G25595A,G25595T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	25599	G25599T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	25603	C25603T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25606	G25606T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	25611	C25611T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25613	C25613G	C	G	.	.	AC=1;AN=1116
+NC_045512v2	25614	C25614T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	25617	G25617T	G	T	.	.	AC=10;AN=1116
+NC_045512v2	25624	C25624T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25626	C25626G,C25626T	C	G,T	.	.	AC=1,2;AN=1116
+NC_045512v2	25642	C25642T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25644	G25644T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25665	C25665T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	25667	C25667T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	25672	C25672T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25681	G25681A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	25687	G25687A,G25687T	G	A,T	.	.	AC=2,3;AN=1116
+NC_045512v2	25688	C25688T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	25690	G25690A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	25699	G25699T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	25705	T25705C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	25710	C25710T	C	T	.	.	AC=8;AN=1116
+NC_045512v2	25713	T25713C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	25714	C25714T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25720	G25720T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	25721	C25721T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25728	C25728T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	25731	C25731T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	25732	T25732G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	25740	G25740T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25747	A25747C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	25767	G25767T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	25775	G25775T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	25776	G25776T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25777	C25777T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25783	T25783C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	25784	G25784T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	25785	G25785T	G	T	.	.	AC=7;AN=1116
+NC_045512v2	25791	C25791T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	25793	G25793A,G25793T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	25797	C25797T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	25800	A25800T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	25801	A25801T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	25806	A25806G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	25814	A25814G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	25831	C25831T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	25844	C25844T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	25855	G25855T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	25856	A25856C	A	C	.	.	AC=2;AN=1116
+NC_045512v2	25872	C25872T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25886	C25886T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25889	C25889T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	25896	C25896T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	25904	C25904T	C	T	.	.	AC=13;AN=1116
+NC_045512v2	25906	G25906C,G25906T	G	C,T	.	.	AC=6,3;AN=1116
+NC_045512v2	25907	G25907T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	25910	A25910C,A25910G	A	C,G	.	.	AC=1,2;AN=1116
+NC_045512v2	25911	T25911G	T	G	.	.	AC=1;AN=1116
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+NC_045512v2	25916	C25916T	C	T	.	.	AC=8;AN=1116
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+NC_045512v2	25922	G25922T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	25936	C25936T	C	T	.	.	AC=2;AN=1116
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+NC_045512v2	25947	G25947C,G25947T	G	C,T	.	.	AC=5,7;AN=1116
+NC_045512v2	25948	A25948T	A	T	.	.	AC=1;AN=1116
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+NC_045512v2	25996	G25996A,G25996T	G	A,T	.	.	AC=2,6;AN=1116
+NC_045512v2	26010	C26010T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	26013	C26013T	C	T	.	.	AC=1;AN=1116
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+NC_045512v2	26022	C26022T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	26029	C26029A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	26038	T26038C	T	C	.	.	AC=3;AN=1116
+NC_045512v2	26056	G26056T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	26058	C26058T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	26060	C26060T	C	T	.	.	AC=8;AN=1116
+NC_045512v2	26062	G26062A,G26062T	G	A,T	.	.	AC=1,4;AN=1116
+NC_045512v2	26063	G26063T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	26070	A26070G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	26094	T26094C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	26097	A26097G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	26105	A26105G	A	G	.	.	AC=1;AN=1116
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+NC_045512v2	26111	C26111T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	26113	G26113C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	26126	A26126T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	26139	C26139T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	26144	G26144A,G26144T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	26149	T26149C	T	C	.	.	AC=3;AN=1116
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+NC_045512v2	26754	G26754A	G	A	.	.	AC=1;AN=1116
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+NC_045512v2	26918	G26918T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	26927	A26927G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	26936	C26936T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	26937	G26937A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	26951	G26951A,G26951T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	26972	T26972C	T	C	.	.	AC=15;AN=1116
+NC_045512v2	26984	C26984T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	26985	C26985T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	26986	A26986T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	27002	C27002T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27005	C27005T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27008	G27008T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27014	G27014T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27046	C27046T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27047	G27047T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27059	C27059T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27084	G27084A,G27084T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	27086	A27086T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	27092	C27092T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27107	A27107T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	27110	C27110T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27119	C27119T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27128	C27128T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27137	A27137G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	27143	C27143T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27147	G27147T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27160	G27160T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27165	G27165T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27167	C27167T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27207	T27207C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27212	T27212C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	27213	C27213T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	27216	T27216A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	27232	A27232G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27237	A27237G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27256	A27256G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27263	C27263T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27264	T27264G	T	G	.	.	AC=2;AN=1116
+NC_045512v2	27277	A27277G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27280	T27280C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27281	G27281T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	27294	C27294T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27297	C27297T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27299	T27299C	T	C	.	.	AC=10;AN=1116
+NC_045512v2	27303	C27303A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	27319	T27319C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	27327	G27327T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27328	T27328C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27346	T27346C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27358	G27358T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27371	C27371T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27382	G27382C,G27382T	G	C,T	.	.	AC=1,1;AN=1116
+NC_045512v2	27383	A27383T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	27384	T27384C	T	C	.	.	AC=4;AN=1116
+NC_045512v2	27390	G27390C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	27393	C27393T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27403	A27403T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	27415	G27415A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27416	C27416T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27418	C27418T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27420	G27420A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27429	C27429T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27431	C27431T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27434	C27434T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	27447	T27447C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	27459	G27459T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27476	C27476T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27478	G27478T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27484	T27484C	T	C	.	.	AC=4;AN=1116
+NC_045512v2	27489	A27489G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27498	C27498T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27499	T27499C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27506	G27506T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	27509	C27509T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27513	C27513T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27516	G27516A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27519	C27519A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	27527	C27527T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27532	C27532T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	27539	T27539C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27561	G27561T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	27576	T27576C,T27576G	T	C,G	.	.	AC=3,2;AN=1116
+NC_045512v2	27577	C27577T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27583	G27583T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	27589	G27589A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	27596	C27596T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27598	G27598T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27600	C27600T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27603	C27603T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27604	G27604A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27610	C27610T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27612	C27612T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27622	T27622C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27630	C27630T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27632	G27632T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	27634	T27634C	T	C	.	.	AC=3;AN=1116
+NC_045512v2	27637	G27637A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27641	C27641T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27644	C27644A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	27645	T27645A	T	A	.	.	AC=2;AN=1116
+NC_045512v2	27651	G27651C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	27657	C27657T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27666	G27666A,G27666T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	27669	A27669G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	27670	G27670T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27672	T27672C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27673	C27673T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27674	A27674T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	27675	A27675C	A	C	.	.	AC=1;AN=1116
+NC_045512v2	27679	C27679T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27684	C27684T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27685	T27685C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27688	C27688T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27691	A27691T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	27703	G27703T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	27708	G27708T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27717	G27717A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27741	C27741T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	27746	G27746T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27752	C27752T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27754	G27754T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27755	A27755T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	27762	G27762C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	27769	C27769G,C27769T	C	G,T	.	.	AC=1,2;AN=1116
+NC_045512v2	27778	A27778G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27798	G27798T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27800	C27800A	C	A	.	.	AC=20;AN=1116
+NC_045512v2	27804	C27804T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27806	G27806T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27807	C27807G	C	G	.	.	AC=1;AN=1116
+NC_045512v2	27808	T27808C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	27811	T27811C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	27821	A27821G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	27824	T27824C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27827	G27827A,G27827T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	27834	A27834T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	27835	T27835C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27842	G27842T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	27845	C27845T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27846	T27846C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27847	C27847T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	27849	C27849T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27851	T27851C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	27852	G27852T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	27856	T27856C,T27856G	T	C,G	.	.	AC=1,1;AN=1116
+NC_045512v2	27857	G27857T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27865	A27865T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	27866	T27866A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	27869	T27869C	T	C	.	.	AC=4;AN=1116
+NC_045512v2	27874	C27874T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27877	G27877T	G	T	.	.	AC=4;AN=1116
+NC_045512v2	27881	C27881T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	27882	G27882T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27890	G27890T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	27900	T27900C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27903	C27903T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	27906	G27906T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27911	C27911T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27915	G27915A	G	A	.	.	AC=4;AN=1116
+NC_045512v2	27916	G27916T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27919	T27919C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27920	C27920T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	27923	C27923T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	27925	C27925A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	27932	A27932G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	27933	G27933A,G27933T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	27944	C27944T	C	T	.	.	AC=26;AN=1116
+NC_045512v2	27945	C27945T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	27955	G27955A,G27955T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	27962	G27962T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	27964	C27964T	C	T	.	.	AC=22;AN=1116
+NC_045512v2	27970	C27970A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	27972	C27972T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	27973	A27973G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27979	A27979G,A27979T	A	G,T	.	.	AC=1,1;AN=1116
+NC_045512v2	27987	G27987T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	27988	T27988C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	27989	A27989G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	27990	G27990A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	27996	G27996T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	27998	C27998T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28001	G28001C,G28001T	G	C,T	.	.	AC=1,2;AN=1116
+NC_045512v2	28003	G28003C,G28003T	G	C,T	.	.	AC=4,1;AN=1116
+NC_045512v2	28005	C28005T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28006	C28006T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28009	T28009C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28010	T28010A	T	A	.	.	AC=1;AN=1116
+NC_045512v2	28026	T28026C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28027	G28027T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	28044	G28044T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28045	C28045T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	28048	G28048A,G28048T	G	A,T	.	.	AC=1,5;AN=1116
+NC_045512v2	28056	G28056A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	28057	C28057T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28065	A28065C	A	C	.	.	AC=2;AN=1116
+NC_045512v2	28073	G28073T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28077	G28077T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28079	G28079A,G28079T	G	A,T	.	.	AC=1,3;AN=1116
+NC_045512v2	28081	A28081T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	28083	G28083T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	28085	G28085T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28086	G28086T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	28087	C28087T	C	T	.	.	AC=8;AN=1116
+NC_045512v2	28093	C28093T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	28098	T28098C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28099	C28099T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	28109	G28109T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28110	T28110C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	28111	A28111G	A	G	.	.	AC=4;AN=1116
+NC_045512v2	28115	C28115T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28117	A28117T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	28118	T28118C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28120	T28120C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28121	C28121T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28123	G28123T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28124	T28124C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28127	T28127C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28133	A28133T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	28153	C28153T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28165	A28165G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28166	G28166A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	28167	G28167A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	28169	A28169G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28178	G28178T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28196	T28196C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28198	G28198T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28201	C28201T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28202	G28202A	G	A	.	.	AC=3;AN=1116
+NC_045512v2	28209	G28209T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28214	C28214A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	28221	G28221T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28230	G28230T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28245	T28245C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28250	T28250G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	28251	T28251G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	28254	A28254C,A28254G	A	C,G	.	.	AC=1,1;AN=1116
+NC_045512v2	28256	C28256T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28269	C28269T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28271	A28271G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28272	A28272T	A	T	.	.	AC=6;AN=1116
+NC_045512v2	28273	A28273T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	28274	A28274G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28276	G28276C	G	C	.	.	AC=2;AN=1116
+NC_045512v2	28277	T28277C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28280	G28280A,G28280C,G28280T	G	A,C,T	.	.	AC=2,4,1;AN=1116
+NC_045512v2	28281	A28281T	A	T	.	.	AC=4;AN=1116
+NC_045512v2	28282	T28282A	T	A	.	.	AC=4;AN=1116
+NC_045512v2	28290	C28290T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28292	C28292A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	28297	T28297C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28300	G28300T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28304	A28304T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	28307	G28307A,G28307C,G28307T	G	A,C,T	.	.	AC=1,1,1;AN=1116
+NC_045512v2	28308	C28308G	C	G	.	.	AC=2;AN=1116
+NC_045512v2	28310	C28310A,C28310T	C	A,T	.	.	AC=3,5;AN=1116
+NC_045512v2	28311	C28311T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	28312	C28312T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28315	C28315T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28320	C28320T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28321	G28321A,G28321T	G	A,T	.	.	AC=2,4;AN=1116
+NC_045512v2	28325	G28325A,G28325T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	28336	A28336G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28337	G28337A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	28338	A28338G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28340	T28340C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28344	C28344T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28346	G28346T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28348	C28348T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28356	A28356G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28360	T28360C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28362	G28362C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	28367	C28367T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28371	G28371T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28373	G28373T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28374	G28374T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28375	G28375T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	28376	G28376T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28378	G28378T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	28380	G28380A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	28389	A28389T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	28396	G28396A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	28411	C28411T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28432	C28432T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28436	G28436T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28451	G28451C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	28453	C28453T	C	T	.	.	AC=6;AN=1116
+NC_045512v2	28472	C28472T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	28476	G28476T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28483	A28483G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28487	G28487A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	28494	T28494C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28500	C28500T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28512	C28512G,C28512T	C	G,T	.	.	AC=2,1;AN=1116
+NC_045512v2	28514	G28514T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28541	G28541T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28546	C28546A	C	A	.	.	AC=1;AN=1116
+NC_045512v2	28557	G28557T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28603	C28603T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	28609	C28609T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28612	A28612G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28621	G28621A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	28624	A28624T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	28628	G28628T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	28629	C28629T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28630	T28630G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	28638	C28638A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	28651	C28651T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	28655	G28655A,G28655T	G	A,T	.	.	AC=2,1;AN=1116
+NC_045512v2	28657	C28657T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	28674	C28674T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28681	G28681A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	28690	G28690T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	28697	C28697T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28699	A28699G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28703	G28703C,G28703T	G	C,T	.	.	AC=1,1;AN=1116
+NC_045512v2	28707	A28707T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	28708	C28708T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	28715	A28715T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	28720	C28720T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28723	T28723C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28724	C28724T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28725	C28725T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28727	G28727T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28732	C28732T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28744	C28744T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	28745	G28745A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	28754	C28754T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28759	T28759C	T	C	.	.	AC=2;AN=1116
+NC_045512v2	28760	C28760A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	28765	A28765T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	28770	C28770T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28775	C28775T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28808	G28808T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28812	G28812T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28813	T28813G	T	G	.	.	AC=1;AN=1116
+NC_045512v2	28817	G28817T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28819	C28819T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28821	C28821A	C	A	.	.	AC=4;AN=1116
+NC_045512v2	28824	C28824T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28826	C28826T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28830	C28830A	C	A	.	.	AC=2;AN=1116
+NC_045512v2	28833	C28833T	C	T	.	.	AC=10;AN=1116
+NC_045512v2	28836	C28836T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28841	A28841G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28842	G28842T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28844	C28844T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28845	G28845T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28846	C28846T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28847	A28847T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	28849	C28849T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28851	G28851C,G28851T	G	C,T	.	.	AC=2,6;AN=1116
+NC_045512v2	28853	T28853G	T	G	.	.	AC=2;AN=1116
+NC_045512v2	28854	C28854T	C	T	.	.	AC=95;AN=1116
+NC_045512v2	28857	G28857T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	28860	A28860G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28863	C28863T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28866	C28866T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28868	C28868T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	28869	C28869T	C	T	.	.	AC=11;AN=1116
+NC_045512v2	28875	G28875T	G	T	.	.	AC=2;AN=1116
+NC_045512v2	28877	A28877G,A28877T	A	G,T	.	.	AC=1,4;AN=1116
+NC_045512v2	28878	G28878C,G28878T	G	C,T	.	.	AC=4,1;AN=1116
+NC_045512v2	28880	A28880G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	28881	G28881A	G	A	.	.	AC=426;AN=1116
+NC_045512v2	28882	G28882A,G28882T	G	A,T	.	.	AC=423,1;AN=1116
+NC_045512v2	28883	G28883C	G	C	.	.	AC=423;AN=1116
+NC_045512v2	28884	G28884T	G	T	.	.	AC=5;AN=1116
+NC_045512v2	28887	C28887T	C	T	.	.	AC=36;AN=1116
+NC_045512v2	28890	C28890T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	28892	C28892T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	28893	C28893T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28896	C28896T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28897	T28897C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	28899	G28899A,G28899C,G28899T	G	A,C,T	.	.	AC=1,2,10;AN=1116
+NC_045512v2	28900	A28900C	A	C	.	.	AC=2;AN=1116
+NC_045512v2	28901	A28901G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	28903	G28903C,G28903T	G	C,T	.	.	AC=1,4;AN=1116
+NC_045512v2	28905	C28905T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28907	G28907A,G28907T	G	A,T	.	.	AC=1,2;AN=1116
+NC_045512v2	28911	A28911T	A	T	.	.	AC=2;AN=1116
+NC_045512v2	28913	G28913T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28914	G28914T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	28916	G28916A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	28917	G28917T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28932	C28932T	C	T	.	.	AC=55;AN=1116
+NC_045512v2	28936	G28936A,G28936T	G	A,T	.	.	AC=1,1;AN=1116
+NC_045512v2	28939	G28939T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28940	C28940T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	28959	A28959G	A	G	.	.	AC=3;AN=1116
+NC_045512v2	28960	G28960T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	28968	G28968T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	28969	C28969T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	28975	G28975C,G28975T	G	C,T	.	.	AC=5,16;AN=1116
+NC_045512v2	28977	C28977T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	29010	T29010C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	29013	C29013T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29024	G29024T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29031	A29031T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	29044	G29044A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	29059	T29059C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	29072	G29072T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29077	C29077T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29085	C29085T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	29086	A29086T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	29095	C29095T	C	T	.	.	AC=7;AN=1116
+NC_045512v2	29101	A29101G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	29115	A29115T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	29119	C29119T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	29128	T29128C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	29140	G29140A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	29143	A29143G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	29144	C29144T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	29148	T29148C	T	C	.	.	AC=10;AN=1116
+NC_045512v2	29149	C29149T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29171	C29171T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29179	G29179T	G	T	.	.	AC=6;AN=1116
+NC_045512v2	29185	T29185A	T	A	.	.	AC=2;AN=1116
+NC_045512v2	29194	T29194C	T	C	.	.	AC=1;AN=1116
+NC_045512v2	29195	G29195T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29200	C29200T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	29203	C29203T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29212	G29212A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	29227	G29227A,G29227T	G	A,T	.	.	AC=4,3;AN=1116
+NC_045512v2	29239	G29239A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	29242	A29242G	A	G	.	.	AC=1;AN=1116
+NC_045512v2	29247	C29247T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29249	C29249T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29253	C29253T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29254	G29254A,G29254T	G	A,T	.	.	AC=2,3;AN=1116
+NC_045512v2	29259	C29259T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29260	G29260T	G	T	.	.	AC=3;AN=1116
+NC_045512v2	29272	C29272T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29274	C29274T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	29284	C29284T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29290	G29290A	G	A	.	.	AC=1;AN=1116
+NC_045512v2	29291	G29291A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	29296	C29296T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	29311	C29311T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	29315	G29315T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29332	G29332T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29350	A29350G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	29353	C29353T	C	T	.	.	AC=5;AN=1116
+NC_045512v2	29358	C29358T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	29362	C29362T	C	T	.	.	AC=4;AN=1116
+NC_045512v2	29363	C29363T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29366	C29366T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29367	C29367T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29370	C29370G,C29370T	C	G,T	.	.	AC=3,2;AN=1116
+NC_045512v2	29376	C29376T	C	T	.	.	AC=1;AN=1116
+NC_045512v2	29384	G29384T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29391	A29391G	A	G	.	.	AC=2;AN=1116
+NC_045512v2	29392	G29392T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29395	G29395A	G	A	.	.	AC=2;AN=1116
+NC_045512v2	29399	G29399A	G	A	.	.	AC=5;AN=1116
+NC_045512v2	29402	G29402T	G	T	.	.	AC=8;AN=1116
+NC_045512v2	29421	C29421T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29422	G29422A,G29422T	G	A,T	.	.	AC=1,8;AN=1116
+NC_045512v2	29424	A29424T	A	T	.	.	AC=1;AN=1116
+NC_045512v2	29427	G29427T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29431	G29431T	G	T	.	.	AC=1;AN=1116
+NC_045512v2	29434	G29434C	G	C	.	.	AC=2;AN=1116
+NC_045512v2	29445	C29445T	C	T	.	.	AC=3;AN=1116
+NC_045512v2	29449	G29449A,G29449T	G	A,T	.	.	AC=1,3;AN=1116
+NC_045512v2	29451	C29451T	C	T	.	.	AC=2;AN=1116
+NC_045512v2	29462	G29462C	G	C	.	.	AC=1;AN=1116
+NC_045512v2	29464	T29464C	T	C	.	.	AC=5;AN=1116
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_15_tree.nh
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_15_tree.nh	Mon Feb 02 14:38:06 2026 +0000
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_16_path_mutations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_16_path_mutations.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,4 @@
+England/MILK-A474DA/2020|20-10-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/MILK-A474DA/2020|20-10-06:A6659G 
+England/ALDP-AA169C/2020|20-10-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/ALDP-AA169C/2020|20-10-22:C23191T,G23909A 
+England/MILK-B04890/2020|20-10-24	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T node_242:C556T,C23525T England/MILK-B04890/2020|20-10-24:G8371A,C23679T 
+England/CAMC-A649C9/2020|20-10-10	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T node_242:C556T,C23525T England/CAMC-A649C9/2020|20-10-10:C6813T,C13620T 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_16_sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_16_sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,4 @@
+England/MILK-A474DA/2020|20-10-06
+England/ALDP-AA169C/2020|20-10-22
+England/MILK-B04890/2020|20-10-24
+England/CAMC-A649C9/2020|20-10-10
diff -r 000000000000 -r 359daa4b6d10 test-data/test_16_subtree.vcf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_16_subtree.vcf	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,49 @@
+##fileformat=VCFv4.2
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	England/CAMC-A649C9/2020|20-10-10	England/MILK-B04890/2020|20-10-24	England/ALDP-AA169C/2020|20-10-22	England/MILK-A474DA/2020|20-10-06
+NC_045512v2	241	C241T	C	T	.	.	AC=4;AN=4	GT	1	1	1	1
+NC_045512v2	556	C556T	C	T	.	.	AC=2;AN=4	GT	1	1	0	0
+NC_045512v2	3037	C3037T	C	T	.	.	AC=4;AN=4	GT	1	1	1	1
+NC_045512v2	4543	C4543T	C	T	.	.	AC=2;AN=4	GT	1	1	0	0
+NC_045512v2	5629	G5629T	G	T	.	.	AC=2;AN=4	GT	1	1	0	0
+NC_045512v2	6659	A6659G	A	G	.	.	AC=1;AN=4	GT	0	0	0	1
+NC_045512v2	6813	C6813T	C	T	.	.	AC=1;AN=4	GT	1	0	0	0
+NC_045512v2	7767	T7767C	T	C	.	.	AC=2;AN=4	GT	0	0	1	1
+NC_045512v2	8047	C8047T	C	T	.	.	AC=2;AN=4	GT	0	0	1	1
+NC_045512v2	8371	G8371A	G	A	.	.	AC=1;AN=4	GT	0	1	0	0
+NC_045512v2	9526	G9526T	G	T	.	.	AC=2;AN=4	GT	1	1	0	0
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_17_all_paths.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_17_all_paths.txt	Mon Feb 02 14:38:06 2026 +0000
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+node_697: T490A,C3177T,C24034T,T26729C,G28077C
+USA/COVID20-0008/2020|MT764174.1|20-03-10: T18736C
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+node_698: C6696T
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+Scotland/CVR705/2020|20-03-26: C11001T,G17122T
+node_699: G1397A,T28688C,G29742T
+England/PHEC-1A601/2020|20-03-04: A19526G
+England/PHEC-2275E/2020|20-06-22: G2246A,C5512T,C20132T,A23586G,C26822T,T27384C,T27484C,G28975T,G29639T
+node_700: A1079C,C9319T,C19862T,T27384C
+USA/CA-QDX-1421/2020|MW065371.1|20-03-18: C7764T,C29625T
+USA/CA-QDX-2080/2020|MW190832.1|20-03-19: C6701T,T7225C
+node_701: C1076T
+AUS/VIC1255/2020|MT451830.1|20-04-11: T13857C,C25469T,C27964T
+AUS/VIC1878/2020|MT745600.1|20-03-29: A28955T
diff -r 000000000000 -r 359daa4b6d10 test-data/test_17_path_clades.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_17_path_clades.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,623 @@
+clade	root_id	from_tree_root
+19A	node_1	
+B	node_1	
+B.26	node_4	 > C7423T
+B.48	node_5	 > C20270T
+B.15	node_8	 > T4949C
+B.5	node_9	 > C29635T
+B.54	node_10	 > C14805T,G26144T
+B.47	node_24	 > A10982G
+B.20	node_660	 > A14940G
+B.52	node_661	 > A1904G,C8090T,C10789T
+B.11	node_662	 > T514C
+B.46	node_663	 > A12557G,C24904T,A27359G
+B.1.14	node_664	 > C25692T
+B.27	node_665	 > G29032A
+B.19	node_666	 > C10277T
+B.6	node_674	 > C6312A,C13730T,C23929T,C28311T
+19B	node_676	 > C8782T,T28144C
+A	node_676	 > C8782T,T28144C
+B.10	node_698	 > C6696T
+B.4	node_699	 > G1397A,T28688C,G29742T
+B.23	node_6	 > C20270T > A29683T
+B.33	node_11	 > C14805T,G26144T > T17247C
+B.28	node_18	 > C14805T,G26144T > G28842T
+B.29	node_19	 > C14805T,G26144T > C23707T
+B.40	node_20	 > C14805T,G26144T > A2480G,C2558T
+B.30	node_21	 > C14805T,G26144T > A4236G,T25655C
+B.41	node_22	 > C14805T,G26144T > G5572T
+B.31	node_23	 > C14805T,G26144T > G13627T,C15540T,A28338G
+B.1	node_26	 > C241T > C14408T
+B.3	node_658	 > C241T > T241C,G1440A,G2891A
+B.18	node_668	 > G29711T > C1218T,G27806T
+B.13	node_669	 > G29711T > A4838G,C7420T,C14937T,C20148T
+B.51	node_670	 > G29711T > T2116A
+B.45	node_672	 > C28854T > C12710T
+B.12	node_673	 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C
+B.6.6	node_675	 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T
+A.1	node_681	 > C8782T,T28144C > A17858G,C18060T
+A.2	node_682	 > C8782T,T28144C > T9477A,C14805T,G25979T
+A.3	node_697	 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C
+B.4.4	node_700	 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C
+B.4.5	node_701	 > G1397A,T28688C,G29742T > C1076T
+B.37	node_13	 > C14805T,G26144T > T17247C > C8078T
+B.35	node_14	 > C14805T,G26144T > T17247C > A7479G,C25572T
+B.32	node_15	 > C14805T,G26144T > T17247C > A1587G
+B.34	node_16	 > C14805T,G26144T > T17247C > C988T
+B.39	node_17	 > C14805T,G26144T > T17247C > A1515G,C9223T
+B.3.1	node_659	 > C241T > T241C,G1440A,G2891A > G28851T
+A.5	node_678	 > C8782T,T28144C > A23403G,C26088T > G23403A
+A.10	node_680	 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G
+A.28	node_695	 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T
+A.12	node_696	 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T
+20A	node_28	 > C241T > C14408T > A23403G > C3037T
+B.1.108	node_28	 > C241T > C14408T > A23403G > C3037T
+A.23.1	node_691	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C
+A.4	node_692	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T
+A.11	node_693	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T
+A.21	node_694	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T
+B.1.105	node_45	 > C241T > C14408T > A23403G > C3037T > G28514T
+B.1.152	node_46	 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C
+B.1.103	node_47	 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T
+B.1.188	node_48	 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T
+B.1.378	node_49	 > C241T > C14408T > A23403G > C3037T > G3871T
+B.1.199	node_50	 > C241T > C14408T > A23403G > C3037T > C2939T
+B.1.139	node_51	 > C241T > C14408T > A23403G > C3037T > A696C
+B.1.91	node_52	 > C241T > C14408T > A23403G > C3037T > G24077T
+B.1.350	node_53	 > C241T > C14408T > A23403G > C3037T > G25563T
+B.1.216	node_267	 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G
+B.1.221	node_268	 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
+B.1.525	node_272	 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T
+B.1.222	node_273	 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A
+B.1.379	node_274	 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T
+B.1.182	node_275	 > C241T > C14408T > A23403G > C3037T > A20268G
+B.1.5	node_341	 > C241T > C14408T > A23403G > C3037T > C15324T
+B.1.215	node_359	 > C241T > C14408T > A23403G > C3037T > G3831A
+B.1.177.24	node_360	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T
+B.1.8	node_394	 > C241T > C14408T > A23403G > C3037T > A24862G
+B.1.179	node_395	 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T
+B.1.81	node_396	 > C241T > C14408T > A23403G > C3037T > C1909T
+B.1.201	node_397	 > C241T > C14408T > A23403G > C3037T > C2940T
+B.1.395	node_398	 > C241T > C14408T > A23403G > C3037T > C6990T
+B.1.384	node_400	 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T
+B.1.67	node_401	 > C241T > C14408T > A23403G > C3037T > T26512C
+B.1.98	node_402	 > C241T > C14408T > A23403G > C3037T > C25350T
+B.1.76	node_403	 > C241T > C14408T > A23403G > C3037T > T17835C
+B.1.383	node_404	 > C241T > C14408T > A23403G > C3037T > A25575C
+B.1.142	node_405	 > C241T > C14408T > A23403G > C3037T > C14741T
+B.1.131	node_406	 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T
+B.1.376	node_407	 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T
+B.1.23	node_408	 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T
+B.1.153	node_412	 > C241T > C14408T > A23403G > C3037T > G14580T
+B.1.113	node_413	 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T
+B.1.70	node_414	 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C
+B.1.145	node_415	 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A
+B.1.197	node_416	 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C
+B.1.143	node_417	 > C241T > C14408T > A23403G > C3037T > C4084T
+B.1.187	node_418	 > C241T > C14408T > A23403G > C3037T > A544G,C17104T
+B.1.414	node_419	 > C241T > C14408T > A23403G > C3037T > G20275A
+B.1.93	node_420	 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T
+B.1.206	node_421	 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T
+B.1.390	node_422	 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T
+B.1.69	node_423	 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T
+B.1.77	node_424	 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A
+B.1.78	node_425	 > C241T > C14408T > A23403G > C3037T > G29422T
+20B	node_426	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C
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+B.1.1.10	node_616	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A
+20I/501Y.V1	node_618	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
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+B.1.1.25	node_621	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T
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+B.1.1.318	node_649	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C
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+B.1.1.310	node_587	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T > A6900G
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+B.1.429	node_138	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T
+B.1.36.1	node_225	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T
+B.1.36.28	node_226	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
+B.1.36.17	node_227	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T
+B.1.36.27	node_228	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
+B.1.36.21	node_230	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T
+B.1.36.26	node_231	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T
+20A.EU2	node_240	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T
+B.1.258.14	node_334	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T
+B.1.258.2	node_336	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T
+B.1.258.3	node_338	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T
+B.1.177.6	node_370	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T
+B.1.177.12	node_371	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T
+B.1.177.5	node_372	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T
+B.1.177.7	node_373	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T
+B.1.177.8	node_374	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T
+N.1	node_545	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T
+N.4	node_546	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G
+N.3	node_547	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T
+B.1.258.16	node_321	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T
+G.1	node_337	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T
+M.1	node_517	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T
+B.1.160.7	node_242	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T >  > C556T,C23525T
+B.1.258.6	node_324	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T
+B.1.258.7	node_325	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T
+B.1.258.10	node_327	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G
+B.1.258.12	node_328	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A
+B.1.258.17	node_333	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T
+B.1.258.4	node_331	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T
+B.1.258.5	node_332	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
diff -r 000000000000 -r 359daa4b6d10 test-data/test_17_path_mutations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_17_path_mutations.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1234 @@
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+England/OXON-F42364/2020|20-12-18	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_320:C7844T,T24925C,C27920T node_321:C4893T,C29762T England/OXON-F42364/2020|20-12-18:G1306T,G4510T,T8662C,C8733T,C18032T 
+England/MILK-9C2766/2020|20-09-10	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_335:G1464A,A10978T,T20799C node_336:G5572T,G28375T node_337:G2072A,C27294T England/MILK-9C2766/2020|20-09-10:T22189C,G27382C,A27383T,T27384C 
+England/ALDP-A95A9F/2020|20-10-19	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_335:G1464A,A10978T,T20799C node_336:G5572T,G28375T node_337:G2072A,C27294T England/ALDP-A95A9F/2020|20-10-19:T14499C,C17118T,C23854T,A27865T,T27866A 
+England/PHEC-149FA3/2020|20-11-20	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_515:G1820A,C6883T,G21724A,G28003C node_516:C12249T node_517:G3431T,T25577C,C25626T,C27002T England/PHEC-149FA3/2020|20-11-20:G3433A,G8084A,C11941T,C18555T,A26174C 
+England/QEUH-C9332B/2020|20-12-17	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_515:G1820A,C6883T,G21724A,G28003C node_516:C12249T node_517:G3431T,T25577C,C25626T,C27002T England/QEUH-C9332B/2020|20-12-17:G9314A,C13605T,G14490A 
+England/CAMC-A649C9/2020|20-10-10	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T node_242:C556T,C23525T England/CAMC-A649C9/2020|20-10-10:C6813T,C13620T 
+England/MILK-B04890/2020|20-10-24	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T node_242:C556T,C23525T England/MILK-B04890/2020|20-10-24:G8371A,C23679T 
+England/CAMC-A57F03/2020|20-10-09	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_323:G25494T node_324:C25386T England/CAMC-A57F03/2020|20-10-09:T505C,A2419G,G17058T 
+England/MILK-A7D15C/2020|20-10-13	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_323:G25494T node_324:C25386T England/MILK-A7D15C/2020|20-10-13:C21302T,C21304A,C26256T,C27119T,C28453T 
+Wales/PHWC-47F3A5/2020|20-10-07	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_323:G25494T node_325:G28817T Wales/PHWC-47F3A5/2020|20-10-07:T9655C,G28198T 
+England/ALDP-A85BCC/2020|20-10-17	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_323:G25494T node_325:G28817T England/ALDP-A85BCC/2020|20-10-17:T209C,T11857C 
+England/ALDP-A2FCA3/2020|20-10-05	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_326:C20451T,G21770A node_327:T7919G England/ALDP-A2FCA3/2020|20-10-05:C24734T 
+Scotland/MILK-A69E6B/2020|20-10-09	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_326:C20451T,G21770A node_327:T7919G Scotland/MILK-A69E6B/2020|20-10-09:A28483G,A28877G 
+England/MILK-A7D1A7/2020|20-10-13	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_326:C20451T,G21770A node_328:G18583A England/MILK-A7D1A7/2020|20-10-13:T4579A,T27835C 
+England/MILK-A91486/2020|20-10-16	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_326:C20451T,G21770A node_328:G18583A England/MILK-A91486/2020|20-10-16:G2272T,G20679T,G24586T 
+AUT/2021006354/2021|MW672357.1|21-02	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_333:C829T,C14697T,C18176T,G19398T,G28083T,G28975T AUT/2021006354/2021|MW672357.1|21-02:C878T,C12374T,C20384T,C21639T,C29367T 
+England/MILK-E7F4C6/2021|21-01-02	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_333:C829T,C14697T,C18176T,G19398T,G28083T,G28975T England/MILK-E7F4C6/2021|21-01-02:T9070C,C10296T 
+England/ALDP-AA169C/2020|20-10-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/ALDP-AA169C/2020|20-10-22:C23191T,G23909A 
+England/MILK-A474DA/2020|20-10-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/MILK-A474DA/2020|20-10-06:A6659G 
+England/ALDP-B483EA/2020|20-11-07	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_332:T8110C England/ALDP-B483EA/2020|20-11-07:C10039A,T18402C,C29738T 
+England/QEUH-AA0035/2020|20-10-20	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_332:T8110C England/QEUH-AA0035/2020|20-10-20:G11417T 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_17_sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_17_sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1234 @@
+England/BRIS-1853249/2020|20-04-02
+NPL/61-TW/2020|MT072688.1|20-01-13
+Wales/PHWC-25B04/2020|20-03-24
+Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB1317/2020|20-04-09
+Scotland/EDB354/2020|20-03-30
+England/SHEF-BFF8B/2020|20-03-25
+England/SHEF-BFFC7/2020|20-03-25
+England/PHEC-1E01E/2020|20-04-03
+DP0476/2020|LC571003.1|20-02-16
+DP0191/2020|LC570980.1|20-02-15
+England/EXET-135818/2020|20-04-11
+England/LIVE-A5D06/2020|20-03-17
+England/LIVE-A065B/2020|20-05-27
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_18_all_paths.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_18_path_clades.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_18_path_clades.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,623 @@
+clade	root_id	from_tree_root
+19A	node_1	
+B	node_1	
+B.26	node_4	 > C7423T
+B.48	node_5	 > C20270T
+B.15	node_8	 > T4949C
+B.5	node_9	 > C29635T
+B.54	node_10	 > C14805T,G26144T
+B.47	node_24	 > A10982G
+B.20	node_660	 > A14940G
+B.52	node_661	 > A1904G,C8090T,C10789T
+B.11	node_662	 > T514C
+B.46	node_663	 > A12557G,C24904T,A27359G
+B.1.14	node_664	 > C25692T
+B.27	node_665	 > G29032A
+B.19	node_666	 > C10277T
+B.6	node_674	 > C6312A,C13730T,C23929T,C28311T
+19B	node_676	 > C8782T,T28144C
+A	node_676	 > C8782T,T28144C
+B.10	node_698	 > C6696T
+B.4	node_699	 > G1397A,T28688C,G29742T
+B.23	node_6	 > C20270T > A29683T
+B.33	node_11	 > C14805T,G26144T > T17247C
+B.28	node_18	 > C14805T,G26144T > G28842T
+B.29	node_19	 > C14805T,G26144T > C23707T
+B.40	node_20	 > C14805T,G26144T > A2480G,C2558T
+B.30	node_21	 > C14805T,G26144T > A4236G,T25655C
+B.41	node_22	 > C14805T,G26144T > G5572T
+B.31	node_23	 > C14805T,G26144T > G13627T,C15540T,A28338G
+B.1	node_26	 > C241T > C14408T
+B.3	node_658	 > C241T > T241C,G1440A,G2891A
+B.18	node_668	 > G29711T > C1218T,G27806T
+B.13	node_669	 > G29711T > A4838G,C7420T,C14937T,C20148T
+B.51	node_670	 > G29711T > T2116A
+B.45	node_672	 > C28854T > C12710T
+B.12	node_673	 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C
+B.6.6	node_675	 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T
+A.1	node_681	 > C8782T,T28144C > A17858G,C18060T
+A.2	node_682	 > C8782T,T28144C > T9477A,C14805T,G25979T
+A.3	node_697	 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C
+B.4.4	node_700	 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C
+B.4.5	node_701	 > G1397A,T28688C,G29742T > C1076T
+B.37	node_13	 > C14805T,G26144T > T17247C > C8078T
+B.35	node_14	 > C14805T,G26144T > T17247C > A7479G,C25572T
+B.32	node_15	 > C14805T,G26144T > T17247C > A1587G
+B.34	node_16	 > C14805T,G26144T > T17247C > C988T
+B.39	node_17	 > C14805T,G26144T > T17247C > A1515G,C9223T
+B.3.1	node_659	 > C241T > T241C,G1440A,G2891A > G28851T
+A.5	node_678	 > C8782T,T28144C > A23403G,C26088T > G23403A
+A.10	node_680	 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G
+A.28	node_695	 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T
+A.12	node_696	 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T
+20A	node_28	 > C241T > C14408T > A23403G > C3037T
+B.1.108	node_28	 > C241T > C14408T > A23403G > C3037T
+A.23.1	node_691	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C
+A.4	node_692	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T
+A.11	node_693	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T
+A.21	node_694	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T
+B.1.105	node_45	 > C241T > C14408T > A23403G > C3037T > G28514T
+B.1.152	node_46	 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C
+B.1.103	node_47	 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T
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+B.1.378	node_49	 > C241T > C14408T > A23403G > C3037T > G3871T
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+B.1.350	node_53	 > C241T > C14408T > A23403G > C3037T > G25563T
+B.1.216	node_267	 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G
+B.1.221	node_268	 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
+B.1.525	node_272	 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T
+B.1.222	node_273	 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A
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+B.1.8	node_394	 > C241T > C14408T > A23403G > C3037T > A24862G
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+B.1.81	node_396	 > C241T > C14408T > A23403G > C3037T > C1909T
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+B.1.197	node_416	 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C
+B.1.143	node_417	 > C241T > C14408T > A23403G > C3037T > C4084T
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+B.1.1.291	node_654	 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T
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+B.1.1.133	node_559	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A8072G
+B.1.1.302	node_561	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C9120T,C18032T,C20233T,G24926T,A27674T,A29350G
+B.1.1.297	node_562	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C
+B.1.1.198	node_563	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T
+B.1.1.97	node_564	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G
+B.1.1.256	node_565	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C3622T,C25844T,C28087T
+B.1.1.237	node_566	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G21624T
+B.1.1.86	node_570	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C
+B.1.1.115	node_571	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C
+B.1.1.234	node_574	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G
+B.1.173	node_578	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G20931A
+B.1.1.134	node_579	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C6582T
+B.1.1.287	node_580	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12488T,C25528T,G27084A
+B.1.1.231	node_581	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A25505C
+B.1.1.37	node_582	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C21637T,A28169G
+B.1.1.151	node_583	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T
+B.1.1.59	node_588	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T
+B.1.1.16	node_593	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C222T,C21780T
+B.1.1.148	node_594	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T
+B.1.1.12	node_595	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3163C
+B.1.1.229	node_596	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T
+B.1.1.307	node_597	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G1210T,G9802T,G12067T
+B.1.1.168	node_598	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3177T,G22093A
+B.1.1.147	node_604	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4084T,G5716A,C6568T,C6628T,C7528T,C8139T,C9298T,A10286G,C19524T,A22116G
+B.1.1.225	node_605	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C815T,C3411T,G25437T
+B.1.1.239	node_606	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C11620T
+B.1.1.313	node_607	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1170T
+B.1.1.92	node_608	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T3154C
+B.1.1.26	node_609	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G16813A
+B.1.1.89	node_612	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G27281T
+B.1.1.116	node_613	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G18803T,A22606G
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+B.1.1.67	node_615	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G11447A,C21648T
+B.1.1.10	node_616	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19170T,G19509A
+20I/501Y.V1	node_618	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
+B.1.1.7	node_618	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T
+B.1.1.25	node_621	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1163T
+B.1.1.217	node_625	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C19488T
+B.1.1.96	node_628	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11869G,T27484C
+B.1.1.20	node_629	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2399T
+B.1.1.178	node_630	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T4149C,C12525T,G25599T
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+B.1.1.32	node_638	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C5700A
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+B.1.1.318	node_649	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C
+B.1.1.263	node_650	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G5924A,T21775G
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+B.1.265	node_114	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T
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+B.1.401	node_294	 > C241T > C14408T > A23403G > C3037T > A20268G > C28854T > G208T > T2845C
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+P.2	node_480	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T
+B.1.1.143	node_481	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T
+C.3	node_502	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T
+C.14	node_503	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T
+C.13	node_504	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G
+C.1	node_505	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T
+C.16	node_506	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T
+C.5	node_507	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C
+C.2	node_508	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T
+C.4	node_509	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T
+B.1.1.294	node_515	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C
+B.1.1.293	node_518	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T
+B.1.1.50	node_523	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T
+B.1.1.209	node_524	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A
+B.1.1.47	node_526	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T
+B.1.1.284	node_527	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T
+B.1.1.179	node_533	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T
+B.1.146	node_573	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T
+B.1.429	node_138	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T
+B.1.36.1	node_225	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T
+B.1.36.28	node_226	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
+B.1.36.17	node_227	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T
+B.1.36.27	node_228	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
+B.1.36.21	node_230	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T
+B.1.36.26	node_231	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T
+20A.EU2	node_240	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T
+B.1.258.14	node_334	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T
+B.1.258.2	node_336	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T
+B.1.258.3	node_338	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T
+B.1.177.6	node_370	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T
+B.1.177.12	node_371	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T
+B.1.177.5	node_372	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T
+B.1.177.7	node_373	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T
+B.1.177.8	node_374	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T
+N.1	node_545	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T
+N.4	node_546	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G
+N.3	node_547	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T
+B.1.258.16	node_321	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T
+G.1	node_337	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T
+M.1	node_517	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T
+B.1.160.7	node_242	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T >  > C556T,C23525T
+B.1.258.6	node_324	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T
+B.1.258.7	node_325	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T
+B.1.258.10	node_327	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G
+B.1.258.12	node_328	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A
+B.1.258.17	node_333	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T
+B.1.258.4	node_331	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T
+B.1.258.5	node_332	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
diff -r 000000000000 -r 359daa4b6d10 test-data/test_18_path_mutations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_18_path_mutations.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,441 @@
+England/BRIS-1853249/2020|20-04-02	node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T 
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+England/ALDP-9BE8B5/2020|20-09-09	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_368:T16242A England/ALDP-9BE8B5/2020|20-09-09:G28745A 
+Scotland/CVR4309/2020|20-09-14	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T Scotland/CVR4309/2020|20-09-14:C7471T 
+England/ALDP-9BECB9/2020|20-09-10	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_376:A1987G node_377:T14721C,T25519G England/ALDP-9BECB9/2020|20-09-10:C23029T 
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+England/CAMC-AEA62E/2020|20-10-25	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_376:A1987G node_379:C66T,G10870T,A11781G,C25614T England/CAMC-AEA62E/2020|20-10-25:C18329T 
+Wales/PHWC-260AA/2020|20-03-24	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_433:G11801A Wales/PHWC-260AA/2020|20-03-24:T7168C 
+England/BRIS-185470D/2020|20-05-01	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_434:A26332G,A28877T,G28878C 
+England/BRIS-12AF02/2020|20-05-01	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_434:A26332G,A28877T,G28878C England/BRIS-12AF02/2020|20-05-01:G27670T 
+USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_442:C3411T,A12519G,C21757T,G23593C,A23756T,G29751T node_443:G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08:C22264T 
+USA/MA-MGH-03951/2021|MW617773.1|21-01-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_442:C3411T,A12519G,C21757T,G23593C,A23756T,G29751T node_443:G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C USA/MA-MGH-03951/2021|MW617773.1|21-01-22:T27824C 
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+England/CAMB-72B44/2020|20-03-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C 
+England/CAMB-822D3/2020|20-04-12	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C 
+Switzerland/300433/2020|LR898634.1|20-09-29	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_507:G2995T,T4871C,C6449T,C10252T,C19366T,T27808C Switzerland/300433/2020|LR898634.1|20-09-29:G27382T 
+SRB/NS19622-16-06/2020|MW327528.1|20-06-15	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_509:G24794T 
+EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_514:C2706T,G9968T,G16647T,T23480G 
+EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_512:C3373A,C15960T node_513:T15960C node_514:C2706T,G9968T,G16647T,T23480G 
+Japan/TKYE627000_2020/2020|LC593811.1|20-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_521:C313T node_525:C9286T node_527:T4346C,C10376T,C14708T,C28725T,G29692T Japan/TKYE627000_2020/2020|LC593811.1|20-08:C7728T 
+IND/GBRC455a/2020|MW600436.1|20-12-24	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_521:C313T node_532:C5700A node_533:T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T IND/GBRC455a/2020|MW600436.1|20-12-24:G160T 
+BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08:C28969T 
+England/CAMC-947392/2020|20-07-18	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_571:T29464C node_572:G26918T node_573:C7843T,G15438T,C25207T,C28453T England/CAMC-947392/2020|20-07-18:T25949C 
+AUS/VIC11646/2020|MW155572.1|20-07-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_621:A1163T node_623:T7540C,G16647T,G22992A,G23401A node_624:C18555T,C22987T AUS/VIC11646/2020|MW155572.1|20-07-22:G6617T 
+England/CAMC-A65DDB/2020|20-10-11	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_225:G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T England/CAMC-A65DDB/2020|20-10-11:T22918G 
+England/QEUH-9F3FDD/2020|20-09-24	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_226:T7292C,T8410C,C10833T,C11572T,C16293T,T23986C 
+England/QEUH-96A85E/2020|20-08-14	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_227:C7528T,C29555T England/QEUH-96A85E/2020|20-08-14:T23986C 
+HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_228:G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06:C14724T 
+HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_228:G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06:A6391G 
+England/PHEC-149F0D/2020|20-11-19	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_229:C2836T,G21724T node_230:C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T 
+England/MILK-A230C1/2020|20-10-03	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T England/MILK-A230C1/2020|20-10-03:A2175G 
+England/QEUH-A76C07/2020|20-10-12	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T node_373:C15480T England/QEUH-A76C07/2020|20-10-12:G21777A 
+England/MILK-AC7997/2020|20-10-21	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T node_373:C15480T England/MILK-AC7997/2020|20-10-21:C125T 
+Scotland/QEUH-9B75D3/2020|20-09-04	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_360:T445C,C6286T,G21255C,C22227T,C28932T,G29645T node_361:C26801G node_366:C27944T node_367:G204T node_369:C21614T node_374:G8179T Scotland/QEUH-9B75D3/2020|20-09-04:G29778T 
+USA/MA_MGH_00693/2020|MT520290.1|20-04-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_545:C25916T,C29769T USA/MA_MGH_00693/2020|MT520290.1|20-04-06:T28360C 
+CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_546:A2475G CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13:C14805T 
+England/MILK-97356A/2020|20-08-14	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_238:C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A node_239:G13993T node_240:G5629T England/MILK-97356A/2020|20-08-14:C15720T 
+England/ALDP-A2FCA3/2020|20-10-05	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_326:C20451T,G21770A node_327:T7919G England/ALDP-A2FCA3/2020|20-10-05:C24734T 
+England/MILK-A474DA/2020|20-10-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_331:G25218T England/MILK-A474DA/2020|20-10-06:A6659G 
+England/QEUH-AA0035/2020|20-10-20	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G node_316:G29734C node_317:C17104T node_318:T7767C,C8047T,C22879A node_319:C27800A node_322:G12988T,G15598A,G18028T,T24910C,T26972C node_329:C16394T,C22127T,G23876A,G25947T node_330:C29274T node_332:T8110C England/QEUH-AA0035/2020|20-10-20:G11417T 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_18_sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_18_sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,441 @@
+England/BRIS-1853249/2020|20-04-02
+NPL/61-TW/2020|MT072688.1|20-01-13
+Wales/PHWC-25B04/2020|20-03-24
+Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB354/2020|20-03-30
+England/SHEF-BFF8B/2020|20-03-25
+England/SHEF-BFFC7/2020|20-03-25
+England/PHEC-1E01E/2020|20-04-03
+DP0476/2020|LC571003.1|20-02-16
+DP0191/2020|LC570980.1|20-02-15
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+USA/CA-QDX-1986/2020|MW190732.1|20-03-18
+USA/CA-CZB-1015/2020|MT438733.1|20-04-22
+USA/CA-CZB-1051/2020|MT449644.1|20-04-06
+USA/CA-QDX-33/2020|MT614459.1|20-03-15
+USA/DC-HP00063/2020|MT646075.1|20-03-13
+England/PHEC-1A601/2020|20-03-04
+England/ALDP-9EE3AC/2020|20-05-06
+England/CAMB-8042A/2020|20-04-10
+SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29
+England/LIVE-9D7D6/2020|20-04-15
+USA/WI-UW-314/2020|MT706422.1|20-04-16
+Scotland/CVR780/2020|20-03-27
+Japan/TKYE63557_2020/2020|LC581365.1|20-03
+MYS/188407/2020|MT372480.1|20-03-18
+USA/FL-BPHL-0393/2020|MT757005.1|20-03-17
+USA/COVID20-0008/2020|MT764174.1|20-03-10
+USA/IL-CDC-IL2/2020|MT044257.1|20-01-28
+AUS/VIC1878/2020|MT745600.1|20-03-29
+England/SHEF-BFF21/2020|20-03-25
+Switzerland/100159/2020|LR884273.1|20-03-16
+England/LOND-126031F/2020|20-03-15
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16
+USA/NY-QDX-1969/2020|MW190709.1|20-03-15
+Scotland/CVR44/2020|20-03-13
+Scotland/CVR207/2020|20-03-18
+Spain/R11/2020|LR884126.1|20-03-06
+Spain/LP19_4952/2020|LR884066.1|20-03-07
+Spain/R10_33/2020|LR884127.1|20-03-02
+Scotland/EDB5629/2020|20-03-24
+Scotland/EDB5040/2020|20-04-02
+USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24
+England/BRIS-125347/2020|20-03-27
+IND/763/2020|MT577009.1|20
+England/CAMB-75BD8/2020|20-03-29
+USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29
+USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29
+USA/WI-UW-26/2020|MT706147.1|20-03-24
+USA/IL-QDX-2568/2020|MW191367.1|20-03-14
+USA/WI-UW-558/2020|MT750137.1|20-06-25
+EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02
+Scotland/GCVR-172150/2020|20-03-30
+England/BRIS-122C4F/2020|20-04-02
+USA/RI-CDC-0556/2020|MT304488.1|20-03-01
+Switzerland/100198/2020|LR884312.1|20-03-17
+USA/WI-UW-37/2020|MT706158.1|20-03-22
+Scotland/GCVR-173C30/2020|20-04-07
+England/ALDP-4A2A77/2020|20-05-22
+England/BRIS-12468B/2020|20-04-09
+England/NORW-E9DF7/2020|20-05-02
+Wales/PHWC-27B20/2020|20-03-30
+Wales/PHWC-2624A/2020|20-03-27
+Wales/PHWC-29E43/2020|20-04-04
+England/LOND-D3534/2020|20-03-27
+England/LIVE-A63E5/2020|20-03-18
+Wales/PHWC-27461/2020|20-03-31
+AUS/VIC1056/2020|MT451723.1|20-04-03
+England/LIVE-A65EF/2020|20-03-19
+IND/GBRC209a/2020|MT664202.1|20-06-11
+Scotland/CVR30/2020|20-03-13
+IND/GBRC99/2020|MT509504.1|20-05-06
+AUS/VIC1239/2020|MT451821.1|20-04-02
+IND/GBRC128/2020|MT539172.1|20-05-02
+POL/PL_MCB_75/2020|MW273857.1|20-04-16
+Netherlands/NA_302/2020|LR878041.1|20-04-01
+USA/TX-DSHS-0975/2020|MW217385.1|20-06-16
+Scotland/CVR129/2020|20-03-13
+Scotland/CVR52/2020|20-03-14
+Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20
+England/ALDP-BCA4B0/2020|20-11-23
+USA/WA-S1222/2020|MT821613.1|20-05-08
+England/CAMB-76515/2020|20-03-29
+England/LEED-2A8D10/2020|20-03-31
+Scotland/CVR2381/2020|20-04-13
+Scotland/CVR2197/2020|20-04-11
+Scotland/CVR1519/2020|20-04-03
+England/NORW-E8C37/2020|20-04-13
+Wales/PHWC-3122E/2020|20-04-10
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_19_path_clades.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_19_path_clades.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,623 @@
+clade	root_id	from_tree_root
+19A	node_1	
+B	node_1	
+B.26	node_4	 > C7423T
+B.48	node_5	 > C20270T
+B.15	node_8	 > T4949C
+B.5	node_9	 > C29635T
+B.54	node_10	 > C14805T,G26144T
+B.47	node_24	 > A10982G
+B.20	node_660	 > A14940G
+B.52	node_661	 > A1904G,C8090T,C10789T
+B.11	node_662	 > T514C
+B.46	node_663	 > A12557G,C24904T,A27359G
+B.1.14	node_664	 > C25692T
+B.27	node_665	 > G29032A
+B.19	node_666	 > C10277T
+B.6	node_674	 > C6312A,C13730T,C23929T,C28311T
+19B	node_676	 > C8782T,T28144C
+A	node_676	 > C8782T,T28144C
+B.10	node_698	 > C6696T
+B.4	node_699	 > G1397A,T28688C,G29742T
+B.23	node_6	 > C20270T > A29683T
+B.33	node_11	 > C14805T,G26144T > T17247C
+B.28	node_18	 > C14805T,G26144T > G28842T
+B.29	node_19	 > C14805T,G26144T > C23707T
+B.40	node_20	 > C14805T,G26144T > A2480G,C2558T
+B.30	node_21	 > C14805T,G26144T > A4236G,T25655C
+B.41	node_22	 > C14805T,G26144T > G5572T
+B.31	node_23	 > C14805T,G26144T > G13627T,C15540T,A28338G
+B.1	node_26	 > C241T > C14408T
+B.3	node_658	 > C241T > T241C,G1440A,G2891A
+B.18	node_668	 > G29711T > C1218T,G27806T
+B.13	node_669	 > G29711T > A4838G,C7420T,C14937T,C20148T
+B.51	node_670	 > G29711T > T2116A
+B.45	node_672	 > C28854T > C12710T
+B.12	node_673	 > C28854T > C11752T,C25665T,A27700G,T28854C,T28912C
+B.6.6	node_675	 > C6312A,C13730T,C23929T,C28311T > C6310A,C19524T
+A.1	node_681	 > C8782T,T28144C > A17858G,C18060T
+A.2	node_682	 > C8782T,T28144C > T9477A,C14805T,G25979T
+A.3	node_697	 > C8782T,T28144C > T490A,C3177T,C24034T,T26729C,G28077C
+B.4.4	node_700	 > G1397A,T28688C,G29742T > A1079C,C9319T,C19862T,T27384C
+B.4.5	node_701	 > G1397A,T28688C,G29742T > C1076T
+B.37	node_13	 > C14805T,G26144T > T17247C > C8078T
+B.35	node_14	 > C14805T,G26144T > T17247C > A7479G,C25572T
+B.32	node_15	 > C14805T,G26144T > T17247C > A1587G
+B.34	node_16	 > C14805T,G26144T > T17247C > C988T
+B.39	node_17	 > C14805T,G26144T > T17247C > A1515G,C9223T
+B.3.1	node_659	 > C241T > T241C,G1440A,G2891A > G28851T
+A.5	node_678	 > C8782T,T28144C > A23403G,C26088T > G23403A
+A.10	node_680	 > C8782T,T28144C > A23403G,C26088T > C3037T,A20268G
+A.28	node_695	 > C8782T,T28144C > G22468T,G28878A,G29742A > A481G,G521T,C2197T,G10850A,C12469T,C16391T,G17014T,A23064C,C23525T,C25904T,C27294T,A27489G,A28272T,C28377T
+A.12	node_696	 > C8782T,T28144C > G22468T,G28878A,G29742A > G9802A,G11230T,A16512G,C19951T,G26428T
+20A	node_28	 > C241T > C14408T > A23403G > C3037T
+B.1.108	node_28	 > C241T > C14408T > A23403G > C3037T
+A.23.1	node_691	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C4573T,C10747T,G11230T,G11266T,G11521T,C16575T,C17745T,C22000T,C22033A,G23401T,C23604G,T24097C,G28167A,G28378C
+A.4	node_692	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > G16381A,T17877C,G25500T
+A.11	node_693	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > C24370T
+A.21	node_694	 > C8782T,T28144C > G22468T,G28878A,G29742A > T22468G > T1885A,C5907T,C10138T,G11417T,C11824T,C18129T,G18181A,T20100C,T21982C,G22132T,T22917G,G23402A,G25687T,G26062T,C29686T
+B.1.105	node_45	 > C241T > C14408T > A23403G > C3037T > G28514T
+B.1.152	node_46	 > C241T > C14408T > A23403G > C3037T > G1914A,T16456C
+B.1.103	node_47	 > C241T > C14408T > A23403G > C3037T > C25665T,G28325T
+B.1.188	node_48	 > C241T > C14408T > A23403G > C3037T > C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T
+B.1.378	node_49	 > C241T > C14408T > A23403G > C3037T > G3871T
+B.1.199	node_50	 > C241T > C14408T > A23403G > C3037T > C2939T
+B.1.139	node_51	 > C241T > C14408T > A23403G > C3037T > A696C
+B.1.91	node_52	 > C241T > C14408T > A23403G > C3037T > G24077T
+B.1.350	node_53	 > C241T > C14408T > A23403G > C3037T > G25563T
+B.1.216	node_267	 > C241T > C14408T > A23403G > C3037T > T3011C,G22205T,T27869C,T28853G
+B.1.221	node_268	 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T
+B.1.525	node_272	 > C241T > C14408T > A23403G > C3037T > C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T
+B.1.222	node_273	 > C241T > C14408T > A23403G > C3037T > C1545T,C22879A
+B.1.379	node_274	 > C241T > C14408T > A23403G > C3037T > A11782G,G22203T
+B.1.182	node_275	 > C241T > C14408T > A23403G > C3037T > A20268G
+B.1.5	node_341	 > C241T > C14408T > A23403G > C3037T > C15324T
+B.1.215	node_359	 > C241T > C14408T > A23403G > C3037T > G3831A
+B.1.177.24	node_360	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T
+B.1.8	node_394	 > C241T > C14408T > A23403G > C3037T > A24862G
+B.1.179	node_395	 > C241T > C14408T > A23403G > C3037T > C7834T,C16997T,G25429T
+B.1.81	node_396	 > C241T > C14408T > A23403G > C3037T > C1909T
+B.1.201	node_397	 > C241T > C14408T > A23403G > C3037T > C2940T
+B.1.395	node_398	 > C241T > C14408T > A23403G > C3037T > C6990T
+B.1.384	node_400	 > C241T > C14408T > A23403G > C3037T > C26256T,C29668T
+B.1.67	node_401	 > C241T > C14408T > A23403G > C3037T > T26512C
+B.1.98	node_402	 > C241T > C14408T > A23403G > C3037T > C25350T
+B.1.76	node_403	 > C241T > C14408T > A23403G > C3037T > T17835C
+B.1.383	node_404	 > C241T > C14408T > A23403G > C3037T > A25575C
+B.1.142	node_405	 > C241T > C14408T > A23403G > C3037T > C14741T
+B.1.131	node_406	 > C241T > C14408T > A23403G > C3037T > A1610G,C9344T,C13335T,C28887T
+B.1.376	node_407	 > C241T > C14408T > A23403G > C3037T > C5506T,G14241T
+B.1.23	node_408	 > C241T > C14408T > A23403G > C3037T > T7438C,C29353T
+B.1.153	node_412	 > C241T > C14408T > A23403G > C3037T > G14580T
+B.1.113	node_413	 > C241T > C14408T > A23403G > C3037T > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T
+B.1.70	node_414	 > C241T > C14408T > A23403G > C3037T > C1884T,T26497C
+B.1.145	node_415	 > C241T > C14408T > A23403G > C3037T > G4866T,C14425A
+B.1.197	node_416	 > C241T > C14408T > A23403G > C3037T > C6723T,T26094C
+B.1.143	node_417	 > C241T > C14408T > A23403G > C3037T > C4084T
+B.1.187	node_418	 > C241T > C14408T > A23403G > C3037T > A544G,C17104T
+B.1.414	node_419	 > C241T > C14408T > A23403G > C3037T > G20275A
+B.1.93	node_420	 > C241T > C14408T > A23403G > C3037T > C13862T,C28836T
+B.1.206	node_421	 > C241T > C14408T > A23403G > C3037T > G2282A,T9742C,C17639T
+B.1.390	node_422	 > C241T > C14408T > A23403G > C3037T > C28603T,G28899T
+B.1.69	node_423	 > C241T > C14408T > A23403G > C3037T > C23422T,T23849C,C29686T
+B.1.77	node_424	 > C241T > C14408T > A23403G > C3037T > G3338T,C3511T,A22301G,G29508A
+B.1.78	node_425	 > C241T > C14408T > A23403G > C3037T > G29422T
+20B	node_426	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C
+B.1.195	node_653	 > C241T > C14408T > A23403G > C3037T > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T
+B.1.1.291	node_654	 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T
+B.1.134	node_657	 > C241T > C14408T > A23403G > C3037T > G20980A
+A.2.4	node_688	 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C275T,C1567T,C4543T,A5234G,A5488G,C10029T,G10105T,C11005A,C12815T,C16466T,T16857C,T18417C,A22525G,T22917G,A23403G,G24697A,C25613T,C26681T,A28272T,G28975T,C29421T
+B.1.391	node_32	 > C241T > C14408T > A23403G > C3037T > G25429T > C16289T
+B.1.104	node_33	 > C241T > C14408T > A23403G > C3037T > G25429T > C13730T
+B.1.88	node_34	 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T
+B.1.79	node_38	 > C241T > C14408T > A23403G > C3037T > G25429T > G17278T,C19610T,T26906C,G29688T,G29757T
+B.1.248	node_39	 > C241T > C14408T > A23403G > C3037T > G25429T > A28841G
+B.1.251	node_40	 > C241T > C14408T > A23403G > C3037T > G25429T > G1141T
+B.1.250	node_41	 > C241T > C14408T > A23403G > C3037T > G25429T > C28045T
+B.1.392	node_42	 > C241T > C14408T > A23403G > C3037T > G25429T > C3602T,A24232G
+B.1.252	node_43	 > C241T > C14408T > A23403G > C3037T > G25429T > G1589A,G29474T
+B.1.249	node_44	 > C241T > C14408T > A23403G > C3037T > G25429T > G21538T
+B.1.110	node_54	 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T
+20C	node_61	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T
+B.1.371	node_61	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T
+B.1.440	node_211	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T
+B.1.221.1	node_269	 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T
+B.1.221.2	node_271	 > C241T > C14408T > A23403G > C3037T > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T
+B.1.415	node_276	 > C241T > C14408T > A23403G > C3037T > A20268G > G15732T,T19143C
+B.1.223	node_304	 > C241T > C14408T > A23403G > C3037T > A20268G > G15438T
+B.1.404	node_305	 > C241T > C14408T > A23403G > C3037T > A20268G > A10323G,C28854T
+B.1.181	node_307	 > C241T > C14408T > A23403G > C3037T > A20268G > C2143T,C29370G
+B.1.416	node_308	 > C241T > C14408T > A23403G > C3037T > A20268G > C28833T
+B.1.225	node_311	 > C241T > C14408T > A23403G > C3037T > A20268G > C12915T,G21255T
+B.1.180	node_312	 > C241T > C14408T > A23403G > C3037T > A20268G > T9697C
+B.1.189	node_313	 > C241T > C14408T > A23403G > C3037T > A20268G > C4582T
+B.1.157	node_314	 > C241T > C14408T > A23403G > C3037T > A20268G > T17126C
+B.1.418	node_315	 > C241T > C14408T > A23403G > C3037T > A20268G > C6472T,C7815T
+B.1.151	node_342	 > C241T > C14408T > A23403G > C3037T > C15324T > C18904T,G25606T
+B.1.220	node_343	 > C241T > C14408T > A23403G > C3037T > C15324T > T10561C
+B.1.210	node_344	 > C241T > C14408T > A23403G > C3037T > C15324T > C3634T,C28854T
+B.1.178	node_345	 > C241T > C14408T > A23403G > C3037T > C15324T > G28202A
+B.1.147	node_346	 > C241T > C14408T > A23403G > C3037T > C15324T > C25433T
+B.1.213	node_347	 > C241T > C14408T > A23403G > C3037T > C15324T > A7031G,G13617T
+B.1.209	node_348	 > C241T > C14408T > A23403G > C3037T > C15324T > G19542T,G20679A,T27576G
+B.1.149	node_349	 > C241T > C14408T > A23403G > C3037T > C15324T > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T
+B.1.6	node_350	 > C241T > C14408T > A23403G > C3037T > C15324T > C15277T
+B.1.214	node_351	 > C241T > C14408T > A23403G > C3037T > C15324T > A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T
+B.1.208	node_352	 > C241T > C14408T > A23403G > C3037T > C15324T > G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T
+B.1.218	node_353	 > C241T > C14408T > A23403G > C3037T > C15324T > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A
+B.1.96	node_355	 > C241T > C14408T > A23403G > C3037T > A26530G > G11596T
+B.1.128	node_356	 > C241T > C14408T > A23403G > C3037T > A26530G > C8293T,T18488C,T24739C
+B.1.205	node_357	 > C241T > C14408T > A23403G > C3037T > A26530G > C15277T,A21917G
+B.1.97	node_358	 > C241T > C14408T > A23403G > C3037T > A26530G > A2775G,G4255T,C13568T,A20355G
+20E.EU1	node_361	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G
+B.1.177.14	node_361	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G
+B.1.35	node_399	 > C241T > C14408T > A23403G > C3037T > C6990T > C29200T
+B.1.207	node_410	 > C241T > C14408T > A23403G > C3037T > A187G > C16017T,T27212C,G27561T
+B.1.198	node_411	 > C241T > C14408T > A23403G > C3037T > A187G > C19066A
+B.1.1.119	node_427	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A
+B.1.1.77	node_655	 > C241T > C14408T > A23403G > C3037T > C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T > T15933C,T16968G,T29784C
+A.2.3	node_686	 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C25714T,C26029A
+A.2.2	node_687	 > C8782T,T28144C > T9477A,C14805T,G25979T > C28863T > C28657T > C4540T > C28311T
+B.1.254	node_35	 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > A10874G,T26677C
+B.1.88.1	node_37	 > C241T > C14408T > A23403G > C3037T > G25429T > C25916T > C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T
+B.1.110.2	node_60	 > C241T > C14408T > A23403G > C3037T > G25563T > C8389T > C23453T
+B.1.446	node_64	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A13512T,G13513T,G13514A
+B.1.437	node_65	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1298A
+B.1.485	node_66	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T20037C
+B.1.22	node_67	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > T1059C,C1594T,C11109T
+B.1.349	node_68	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18555T,C28892T
+B.1.453	node_69	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2668T
+B.1.362	node_78	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T
+B.1.489	node_79	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G24368T,C24621T
+B.1.302	node_80	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C18744T,A18978G,A29391G
+B.1.431	node_81	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C4999T,C13730T
+B.1.314	node_82	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > A2018G,C18029T
+B.1.333	node_83	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T
+B.1.448	node_84	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G19542T,C23551T,C28821A
+B.1.310	node_85	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G18281A,A20755C,G25784T
+B.1.509	node_105	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > G1738T,C11916T,C28087T
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+B.1.320	node_107	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C379A
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+B.1.1.277	node_483	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T772C,A2869G,C10868T,G15652T,C29095T
+B.1.1.241	node_484	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A11782G,T21570G,T25473C
+B.1.1.255	node_485	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2576T,C5175T,C6401T
+B.1.1.254	node_486	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1427T
+B.1.1.105	node_487	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C12809T
+B.1.1.274	node_489	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25912T
+B.1.1.180	node_490	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T22843C
+B.1.1.286	node_491	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3323T,C10369T,G18674A
+B.1.1.55	node_492	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A2526C,C10440T,T25316C
+B.1.1.95	node_493	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T13827C,G18756T
+B.1.1.186	node_494	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4113T,G21974C,C23191T
+B.1.1.275	node_495	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3230A,T24076A
+B.1.1.253	node_496	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C4391A,C15848T,T19893C
+B.1.1.83	node_497	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C1420T
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+B.1.1.270	node_511	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A1630C,C27679T
+B.1.1.247	node_512	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T
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+B.1.1.314	node_542	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C
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+B.1.1.187	node_554	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A10260G,A10880G
+B.1.1.164	node_555	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G2164A
+B.1.1.200	node_556	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G3896T
+B.1.1.137	node_557	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C18713T
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+B.1.1.297	node_562	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > A20742C
+B.1.1.198	node_563	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T
+B.1.1.97	node_564	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G569A,C5482T,G17944T,C18747T,A22182G
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+B.1.1.115	node_571	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C
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+B.1.1.151	node_583	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25617T
+B.1.1.59	node_588	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C2638T
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+B.1.1.148	node_594	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C20474T
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+B.1.265	node_114	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C27964T > C28833T
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+B.1.40	node_131	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C10582T > C1076T
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+B.1.36.23	node_232	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C
+B.1.36.16	node_233	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > G25494T
+B.1.36.9	node_234	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2523T,G3994A,C5730T,C9924T,C11109T,C24138A
+B.1.36.24	node_235	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C
+B.1.36.12	node_236	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C11514T,C13168T,G24764T
+B.1.36.10	node_237	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T
+B.1.471	node_246	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > G21204T,G29692T
+B.1.472	node_247	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C16915T,T24202C,G28899T > C26534T
+B.1.258	node_319	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A
+B.1.177.21	node_368	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > T16242A
+B.1.177.22	node_369	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T
+B.1.177.2	node_377	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > T14721C,T25519G
+B.1.177.3	node_378	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > G6344T
+B.1.177.4	node_379	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > A1987G > C66T,G10870T,A11781G,C25614T
+B.1.1.289	node_433	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > G11801A
+B.1.1.2	node_434	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > G25552T > A26332G,A28877T,G28878C
+B.1.316	node_438	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T > T25713C
+R.2	node_443	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T19839C > C3411T,A12519G,C21757T,G23593C,A23756T,G29751T > G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C
+20J/501Y.V3	node_478	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > A6319G,T26149C > T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C
+P.2	node_480	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T
+B.1.1.143	node_481	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G25088T > C12053T > T22020C,G23628T,C25728T,G26063T
+C.3	node_502	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2447T,G22199T
+C.14	node_503	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G29179T
+C.13	node_504	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > A21131G
+C.1	node_505	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > C18747T
+C.16	node_506	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T
+C.5	node_507	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C
+C.2	node_508	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > T8323C,C10369T,T14345C,T15437C,G18292T,C25624T
+C.4	node_509	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > G10097A,C23731T > C4002T,C13536T > G24794T
+B.1.1.294	node_515	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C
+B.1.1.293	node_518	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T
+B.1.1.50	node_523	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G15438T,G25785T
+B.1.1.209	node_524	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > G4510A > G19480A
+B.1.1.47	node_526	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > C19763T
+B.1.1.284	node_527	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C9286T > T4346C,C10376T,C14708T,C28725T,G29692T
+B.1.1.179	node_533	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C313T > C5700A > T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T
+B.1.146	node_573	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29464C > G26918T > C7843T,G15438T,C25207T,C28453T
+B.1.429	node_138	 > C241T > C14408T > A23403G > C3037T > G25563T > C1059T > C28887T > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T > C2395T,T2597C,A12878G,T24349C,G27890T > C8947T,C12100T
+B.1.36.1	node_225	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T
+B.1.36.28	node_226	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C
+B.1.36.17	node_227	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > C7528T,C29555T
+B.1.36.27	node_228	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > T1947C > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T
+B.1.36.21	node_230	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T
+B.1.36.26	node_231	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C22444T,C28854T > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T
+20A.EU2	node_240	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T
+B.1.258.14	node_334	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G18186T,C28854T
+B.1.258.2	node_336	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T
+B.1.258.3	node_338	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G18803T
+B.1.177.6	node_370	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C6317T
+B.1.177.12	node_371	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G17944T,C24334T,T24814C,C27769T
+B.1.177.5	node_372	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > T24769C,C25460T
+B.1.177.7	node_373	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > C15480T
+B.1.177.8	node_374	 > C241T > C14408T > A23403G > C3037T > T445C,C6286T,G21255C,C22227T,C28932T,G29645T > C26801G > C27944T > G204T > C21614T > G8179T
+N.1	node_545	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > C25916T,C29769T
+N.4	node_546	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > A2475G
+N.3	node_547	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > T29148C > G25793T,T27299C > T25793G > G26416T
+B.1.258.16	node_321	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > C7844T,T24925C,C27920T > C4893T,C29762T
+G.1	node_337	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T
+M.1	node_517	 > C241T > C14408T > A23403G > C3037T > G28882A,G28883C > G28881A > C3373A,C15960T > T15960C > G1820A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T
+B.1.160.7	node_242	 > C241T > C14408T > A23403G > C3037T > G25563T > C18877T > C26735T > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T >  > C556T,C23525T
+B.1.258.6	node_324	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T
+B.1.258.7	node_325	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T
+B.1.258.10	node_327	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > T7919G
+B.1.258.12	node_328	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C20451T,G21770A > G18583A
+B.1.258.17	node_333	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T
+B.1.258.4	node_331	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T
+B.1.258.5	node_332	 > C241T > C14408T > A23403G > C3037T > A20268G > G29734C > C17104T > T7767C,C8047T,C22879A > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C
diff -r 000000000000 -r 359daa4b6d10 test-data/test_19_path_mutations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_19_path_mutations.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,437 @@
+England/BRIS-1853249/2020|20-04-02	node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T 
+NPL/61-TW/2020|MT072688.1|20-01-13	node_2:C24034T 
+Wales/PHWC-25B04/2020|20-03-24	node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G 
+Wales/LIVE-A6831/2020|20-03-16	node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C 
+Scotland/EDB1317/2020|20-04-09	node_4:C7423T Scotland/EDB1317/2020|20-04-09:G4207A,T7423C 
+Scotland/EDB354/2020|20-03-30	node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C 
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+DP0476/2020|LC571003.1|20-02-16	node_9:C29635T DP0476/2020|LC571003.1|20-02-16:C29592T 
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+Scotland/EDB046/2020|20-03-15	node_10:C14805T,G26144T node_11:T17247C Scotland/EDB046/2020|20-03-15:C9996T,T26144G 
+Scotland/EDB199/2020|20-03-26	node_10:C14805T,G26144T node_18:G28842T Scotland/EDB199/2020|20-03-26:C22713T,G26031T 
+England/ALDP-9EE3AC/2020|20-05-06	node_10:C14805T,G26144T node_19:C23707T England/ALDP-9EE3AC/2020|20-05-06:G20991T 
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+USA/VA-DCLS-1147/2020|MT992749.1|20-04	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_92:A20553G USA/VA-DCLS-1147/2020|MT992749.1|20-04:G22487C 
+USA/CA-CZB-1275/2020|MT533209.1|20-04-16	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_93:G25947C USA/CA-CZB-1275/2020|MT533209.1|20-04-16:C23685T,G27703T 
+USA/NY-QDX-2365/2020|MW191144.1|20-03-16	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_94:C28863T 
+USA/CA-CZB-2139/2020|MT750510.1|20-05-21	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_95:C19145T USA/CA-CZB-2139/2020|MT750510.1|20-05-21:C5540A 
+USA/FL-BPHL-1988/2020|MW286761.1|20-04-18	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_96:T13914C USA/FL-BPHL-1988/2020|MW286761.1|20-04-18:G3638A,C16217T 
+USA/NC-QDX-174/2020|MT786825.1|20-04-27	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_97:C10458T,G26828T USA/NC-QDX-174/2020|MT786825.1|20-04-27:C18693A 
+ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_61:C1059T node_86:C11916T node_91:C18998T,G29540A node_100:G26217T ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19:C21731T,G29645T 
+England/ALDP-94EB75/2020|20-06-17	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_191:C2416T node_193:G8371T node_195:C22477T node_197:C3811T,G22225A 
+England/ALDP-6E2806/2020|20-07-01	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_191:C2416T node_193:G8371T node_195:C22477T node_197:C3811T,G22225A England/ALDP-6E2806/2020|20-07-01:T16456G,C27769G 
+Wales/PHWC-360A7/2020|20-04-29	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_433:G11801A Wales/PHWC-360A7/2020|20-04-29:T4330C,T24063C 
+Wales/PHWC-260AA/2020|20-03-24	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_429:T19839C node_432:G25552T node_433:G11801A Wales/PHWC-260AA/2020|20-03-24:T7168C 
+England/CAMB-72B44/2020|20-03-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C 
+England/CAMB-822D3/2020|20-04-12	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_501:T28110C 
+England/ALDP-49EC3C/2020|20-05-20	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_502:G2447T,G22199T England/ALDP-49EC3C/2020|20-05-20:G29392T,C29541T 
+PER/covper024/2020|MW030255.1|20-07-04	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_503:G29179T PER/covper024/2020|MW030255.1|20-07-04:C17436T,G27478T 
+PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_503:G29179T PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08:A10323G,G27160T 
+PER/covper040/2020|MW030271.1|20-05-05	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_504:A21131G PER/covper040/2020|MW030271.1|20-05-05:C12854T,G20752T 
+SRB/NS19622-16-06/2020|MW327528.1|20-06-15	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_499:G10097A,C23731T node_500:C4002T,C13536T node_509:G24794T 
+BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08:C28969T 
+USA/WI-UW-114/2020|MT706234.1|20-03-30	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G USA/WI-UW-114/2020|MT706234.1|20-03-30:A14330G,A27989G 
+England/MILK-ABBF2B/2020|20-10-22	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_227:C7528T,C29555T England/MILK-ABBF2B/2020|20-10-22:C10474T,C13536T 
+England/QEUH-96A85E/2020|20-08-14	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T node_211:C18877T node_212:C26735T node_223:C22444T,C28854T node_224:T1947C node_227:C7528T,C29555T England/QEUH-96A85E/2020|20-08-14:T23986C 
+USA/MA_MGH_00693/2020|MT520290.1|20-04-06	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_545:C25916T,C29769T USA/MA_MGH_00693/2020|MT520290.1|20-04-06:T28360C 
+CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C node_427:G28881A node_542:T29148C node_543:G25793T,T27299C node_544:T25793G node_546:A2475G CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13:C14805T 
diff -r 000000000000 -r 359daa4b6d10 test-data/test_19_sample_names.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_19_sample_names.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,437 @@
+England/BRIS-1853249/2020|20-04-02
+NPL/61-TW/2020|MT072688.1|20-01-13
+Wales/PHWC-25B04/2020|20-03-24
+Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB1317/2020|20-04-09
+Scotland/EDB354/2020|20-03-30
+England/SHEF-BFF8B/2020|20-03-25
+England/SHEF-BFFC7/2020|20-03-25
+England/PHEC-1E01E/2020|20-04-03
+DP0476/2020|LC571003.1|20-02-16
+DP0191/2020|LC570980.1|20-02-15
+England/LIVE-A5D06/2020|20-03-17
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+USA/CA-CZB-1015/2020|MT438733.1|20-04-22
+USA/CA-CZB-1073/2020|MT449664.1|20-04-21
+England/SHEF-BFEBB/2020|20-03-24
+USA/CA-CZB-1051/2020|MT449644.1|20-04-06
+HKG/HKU-904a/2020|MT365032.1|20-01-30
+England/LIVE-9E66F/2020|20-04-10
+Scotland/CVR705/2020|20-03-26
+Scotland/EDB046/2020|20-03-15
+Scotland/EDB199/2020|20-03-26
+England/ALDP-9EE3AC/2020|20-05-06
+England/CAMB-8042A/2020|20-04-10
+England/CAMB-737B8/2020|20-03-30
+USA/WA-S885/2020|MT642386.1|20-04-22
+USA/UT-QDX-1870/2020|MW190618.1|20-03-16
+USA/WA3-UW1/2020|MT163716.1|20-02-27
+SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29
+England/LIVE-9D7D6/2020|20-04-15
+USA/WI-UW-325/2020|MT706432.1|20-04-24
+Scotland/CVR780/2020|20-03-27
+USA/MN-MDH-1475/2020|MT920008.1|20-03-23
+England/SHEF-BFF21/2020|20-03-25
+Switzerland/100159/2020|LR884273.1|20-03-16
+England/LOND-126031F/2020|20-03-15
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16
+USA/NY-QDX-1969/2020|MW190709.1|20-03-15
+England/BRIS-130965/2020|20-04-13
+Scotland/CVR44/2020|20-03-13
+Scotland/CVR839/2020|20-03-27
+Scotland/CVR207/2020|20-03-18
+England/NORT-284A9B/2020|20-03-25
+Scotland/CVR10/2020|20-03-10
+Spain/H12_46/2020|LR884009.1|20-04-08
+Spain/R11/2020|LR884126.1|20-03-06
+Spain/LP19_4952/2020|LR884066.1|20-03-07
+Scotland/EDB5629/2020|20-03-24
+Scotland/EDB5040/2020|20-04-02
+England/BRIS-123965/2020|20-04-07
+England/BRIS-125347/2020|20-03-27
+IND/Isolate_9088/2020|MW555597.1|20-06-30
+IND/763/2020|MT577009.1|20
+England/CAMB-75BD8/2020|20-03-29
+England/ALDP-944BD9/2020|20-06-07
+USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29
+USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29
+USA/WI-UW-26/2020|MT706147.1|20-03-24
+USA/IL-QDX-2568/2020|MW191367.1|20-03-14
+USA/UT-UPHL-201111720/2020|MW265609.1|20-04-30
+USA/IN-QDX-184/2020|MT786818.1|20-04-28
+USA/WI-UW-558/2020|MT750137.1|20-06-25
+England/EXET-1358BE/2020|20-04-15
+EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02
+Scotland/GCVR-172150/2020|20-03-30
+England/BRIS-124885/2020|20-03-24
+England/BRIS-122C4F/2020|20-04-02
+USA/RI-CDC-0556/2020|MT304488.1|20-03-01
+Switzerland/100198/2020|LR884312.1|20-03-17
+USA/WI-UW-37/2020|MT706158.1|20-03-22
+Scotland/GCVR-173C30/2020|20-04-07
+England/BRIS-12468B/2020|20-04-09
+England/NORW-E9DF7/2020|20-05-02
+Wales/PHWC-27B20/2020|20-03-30
+Wales/PHWC-2624A/2020|20-03-27
+Wales/PHWC-29E43/2020|20-04-04
+England/LOND-D3534/2020|20-03-27
+England/LIVE-A63E5/2020|20-03-18
+Wales/PHWC-260C8/2020|20-03-26
+Wales/PHWC-16C6F0/2020|20-06-09
+Wales/PHWC-27461/2020|20-03-31
+Wales/PHWC-29F13/2020|20-04-01
+AUS/VIC989/2020|MT451674.1|20-03-31
+AUS/VIC1056/2020|MT451723.1|20-04-03
+England/LIVE-A65EF/2020|20-03-19
+Wales/PHWC-2B7CE/2020|20-04-12
+Scotland/GCVR-1725BE/2020|20-04-04
+Scotland/CVR30/2020|20-03-13
+IND/GBRC99/2020|MT509504.1|20-05-06
+AUS/VIC1239/2020|MT451821.1|20-04-02
+IND/GBRC128/2020|MT539172.1|20-05-02
+IND/GBRC123/2020|MT539176.1|20-05-02
+POL/PL_MCB_75/2020|MW273857.1|20-04-16
+England/CAMB-7BED9/2020|20-04-04
+Netherlands/NA_302/2020|LR878041.1|20-04-01
+England/NORT-289814/2020|20-04-01
+Northern_Ireland/NIRE-1022CB/2020|20-03-25
+Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20
+England/CAMB-76515/2020|20-03-29
+England/LEED-2A8D10/2020|20-03-31
+England/CAMB-7EBDF/2020|20-04-07
+Scotland/CVR1519/2020|20-04-03
+England/MILK-9589F6/2020|20-06-15
+England/BRIS-128441/2020|20-04-16
+England/NORW-E8C37/2020|20-04-13
+Wales/PHWC-3122E/2020|20-04-10
+Wales/PHWC-1645EC/2020|20-05-10
+England/PHEC-127E8/2020|20-03-28
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14
+Scotland/CVR3054/2020|20-04-24
+USA/AK-PHL414/2020|MT946886.1|20-06-03
+England/NORW-E755B/2020|20-05-04
+England/PHEC-20A84/2020|20-04-20
+Scotland/EDB4579/2020|20-05-06
+USA/CA-QDX-2630/2020|MW191335.1|20-03-15
+France/10065EE/2020|MT470176.1|20-03
+IND/GBRC174b/2020|MT607610.1|20-06-05
+France/10036BG/2020|MT470106.1|20-03
+IHUCOVID-0033|LR794417.1|?
+Switzerland/100210/2020|LR884314.1|20-03-18
+POL/PL_MCB_97/2020|MW273879.1|20-05-10
+AUS/VIC38/2020|MT450953.1|20-03-11
+IHUCOVID-0133|LR794459.1|?
+USA/MN67-MDH67/2020|MT911566.1|20-03-14
+Netherlands/NA_292/2020|LR878032.1|20-04-01
+PER/covper091/2020|MW030227.1|20-03-17
+Wales/PHWC-16930B/2020|20-04-01
+Wales/PHWC-34285/2020|20-04-14
+England/BRIS-128DCE/2020|20-04-14
+England/CAMB-1AC7D3/2020|20-04-22
+CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02
+England/LEED-2A87C7/2020|20-04-03
+USA/CA-CZB-1434/2020|MT628140.1|20-03-25
+USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09
+USA/VA-DCLS-0676/2020|MT911804.1|20-04
+USA/MI-QDX-476/2020|MW064508.1|20-03-23
+USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29
+USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29
+USA/VA-DCLS-1557/2020|MW208010.1|20-08
+USA/FL-BPHL-1018/2020|MT966219.1|20-07-17
+USA/CA-CZB-11132/2020|MW276510.1|20-05-23
+Wales/PHWC-2E0A2/2020|20-04-10
+Scotland/EDB3137/2020|20-04-06
+Scotland/EDB2810/2020|20-03-30
+USA/CA-QDX-434/2020|MW064457.1|20-03-20
+USA/CA-CZB-1793/2020|MT750334.1|20-04-16
+USA/WA-UW-2108/2020|MT345811.1|20-03-24
+USA/WI-UW-1119/2020|MT929068.1|20-07-27
+USA/FL-BPHL-1651/2020|MW166116.1|20-07-03
+England/CAMB-7771E/2020|20-03-30
+England/CAMB-7DC91/2020|20-04-05
+USA/TX-DSHS-1232/2020|MW309089.1|20-03-25
+USA/WA-QDX-235/2020|MT806806.1|20-04-27
+USA/VA-DCLS-0426/2020|MT679166.1|20-05
+USA/VA-DCLS-0187/2020|MT450889.1|20-04
+USA/UT-QDX-2224/2020|MW191025.1|20-03-13
+USA/FL-QDX-1620/2020|MW190373.1|20-03-16
+USA/MN-MDH-1596/2020|MT997714.1|20-05-12
+USA/CA-CZB0731/2020|MT385450.1|20-03-31
+USA/MA_MGH_00458/2020|MT520347.1|20-04-04
+USA/MA_MGH_00445/2020|MT520273.1|20-04-01
+USA/NMDOH-2020126568/2020|MW006567.1|20-06-15
+USA/MN-MDH-1464/2020|MT919997.1|20-03-24
+USA/WA-UW-2008/2020|MT326031.1|20-03-24
+USA/WA-UW-6327/2020|MT412324.1|20-04-02
+USA/WA-UW-3832/2020|MT358685.1|20-03-26
+USA/MI-QDX-371/2020|MW064412.1|20-03-23
+USA/MI-QDX-298/2020|MW064340.1|20-03-21
+USA/TX-QDX-261/2020|MT806804.1|20-05-01
+USA/NMDOH-2020174703/2020|MW070044.1|20-07-02
+USA/TX-DSHS-0675/2020|MW093567.1|20-07-16
+England/BRIS-128CA3/2020|20-04-14
+USA/DC-HP00089/2020|MT509482.1|20-03-31
+USA/UT-03817/2020|MT873871.1|20-04-03
+USA/IL-UW-1065/2020|MT929017.1|20-04-20
+USA/CA-QDX-2335/2020|MW191073.1|20-03-17
+USA/MI-QDX-620/2020|MW064645.1|20-03-17
+USA/MI-QDX-595/2020|MW064630.1|20-03-18
+England/BRIS-12D9F2/2020|20-05-06
+England/BRIS-12B156/2020|20-05-08
+USA/WA-QDX-2548/2020|MW191307.1|20-03-16
+AUS/VIC1161/2020|MT451779.1|20-04-09
+England/BRIS-129D72/2020|20-04-15
+USA/MN-MDH-1616/2020|MT997734.1|20-04-24
+USA/CA-QDX-2032/2020|MW190749.1|20-03-17
+USA/CA-QDX-2576/2020|MW191310.1|20-03-16
+Wales/PHWC-26B12/2020|20-03-29
+USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09
+USA/CT-UW-4372/2020|MT345874.1|20-03-30
+USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26
+USA/TX-DSHS-1035/2020|MW228203.1|20-06-15
+USA/TX-DSHS-1428/2020|MW326536.1|20-06-23
+Northern_Ireland/NIRE-1021DD/2020|20-03-14
+Scotland/EDB6052/2020|20-05-08
+England/CAMB-7FBCF/2020|20-04-16
+England/CAMB-784BC/2020|20-04-06
+B90|LR898037.1|?
+O9|LR963074.1|?
+USA/WI-UW-738/2020|MT772509.1|20-06-30
+USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_20_general_stats.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_20_general_stats.txt	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,8 @@
+Total Nodes in Tree: 1935
+Total Samples in Tree: 1234
+Total Condensed Nodes in Tree: 10
+Total Samples in Condensed Nodes: 20
+Total Tree Parsimony: 5362
+Number of Clade Annotations: 2
+Max Tree Depth: 15
+Mean Tree Depth: 8.911670
diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_aberrant_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_aberrant_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,2 @@
+NodeID	Issue
+node_241	internal-no-mutations
diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_clades_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_clades_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,623 @@
+clade	inclusive_count	exclusive_count
+19A	1234	84
+19B	31	31
+20A	1119	407
+20A.EU2	4	4
+20B	419	391
+20C	237	230
+20D	19	19
+20E.EU1	52	52
+20F	3	3
+20G	3	3
+20H/501Y.V2	4	4
+20I/501Y.V1	4	4
+20J/501Y.V3	2	2
+A	31	1
+A.1	2	2
+A.10	2	2
+A.11	2	2
+A.12	2	2
+A.2	8	2
+A.2.2	2	2
+A.2.3	2	2
+A.2.4	2	2
+A.21	2	2
+A.23.1	2	2
+A.28	2	2
+A.3	2	2
+A.4	2	2
+A.5	4	4
+B	1234	4
+B.1	1121	2
+B.1.1.1	20	1
+B.1.1.10	4	2
+B.1.1.105	4	2
+B.1.1.109	2	2
+B.1.1.111	2	2
+B.1.1.113	2	2
+B.1.1.114	38	2
+B.1.1.115	5	1
+B.1.1.116	2	2
+B.1.1.119	418	3
+B.1.1.12	2	2
+B.1.1.120	2	2
+B.1.1.125	2	2
+B.1.1.128	2	2
+B.1.1.13	2	2
+B.1.1.131	2	2
+B.1.1.132	2	2
+B.1.1.133	4	2
+B.1.1.134	2	2
+B.1.1.136	2	2
+B.1.1.137	2	2
+B.1.1.138	2	2
+B.1.1.139	2	2
+B.1.1.143	2	2
+B.1.1.145	2	2
+B.1.1.147	2	2
+B.1.1.148	2	2
+B.1.1.149	2	2
+B.1.1.151	10	2
+B.1.1.153	2	2
+B.1.1.154	2	2
+B.1.1.155	2	2
+B.1.1.157	2	2
+B.1.1.158	2	2
+B.1.1.16	2	2
+B.1.1.160	2	2
+B.1.1.164	2	2
+B.1.1.165	2	2
+B.1.1.168	2	2
+B.1.1.169	2	2
+B.1.1.170	2	2
+B.1.1.171	2	2
+B.1.1.172	2	2
+B.1.1.174	2	2
+B.1.1.178	2	2
+B.1.1.179	2	2
+B.1.1.180	2	2
+B.1.1.181	2	2
+B.1.1.182	2	2
+B.1.1.184	2	2
+B.1.1.185	2	2
+B.1.1.186	2	2
+B.1.1.187	2	2
+B.1.1.189	2	2
+B.1.1.192	2	2
+B.1.1.193	2	2
+B.1.1.194	3	1
+B.1.1.196	2	2
+B.1.1.198	2	2
+B.1.1.199	2	2
+B.1.1.2	2	2
+B.1.1.20	2	2
+B.1.1.200	2	2
+B.1.1.201	2	2
+B.1.1.203	2	2
+B.1.1.204	2	2
+B.1.1.205	2	2
+B.1.1.207	2	2
+B.1.1.209	2	2
+B.1.1.213	2	2
+B.1.1.214	2	2
+B.1.1.215	2	2
+B.1.1.217	6	2
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+B.1.1.219	2	2
+B.1.1.222	2	2
+B.1.1.224	2	2
+B.1.1.225	2	2
+B.1.1.227	2	2
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+B.1.1.231	2	2
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+B.1.1.233	2	2
+B.1.1.234	2	2
+B.1.1.235	4	2
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+B.1.1.237	8	2
+B.1.1.238	2	2
+B.1.1.239	2	2
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+B.1.1.241	2	2
+B.1.1.247	10	1
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+B.1.1.25	7	2
+B.1.1.250	2	2
+B.1.1.251	2	2
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+B.1.1.256	2	2
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+B.1.1.26	6	2
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+B.1.1.28	10	4
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+B.1.1.314	10	1
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+D.2	3	3
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+R.1	4	2
+R.2	2	2
diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_haplotype_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_haplotype_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1225 @@
+mutation_set	sample_count
+61T,241T,913T,1541T,2836T,3037T,4105T,4754T,5730T,11259T,14408T,18877T,21597T,21724T,21841A,22444T,23403G,25000T,25563T,26144A,26735T,26849T,28854T,29358T	1
+61T,241T,913T,1541T,2836T,3037T,9745T,10440T,11259T,14408T,18877T,21724T,22444T,23403G,25000T,25563T,26144A,26735T,26849T,28854T,29358T	1
+66A,241T,782T,1059T,1210T,3037T,4455T,7768T,8773G,11916T,14408T,17304T,18998T,23403G,24805C,25563T,26270T,28045T,29540A	1
+66A,241T,1059T,3037T,4455T,7768T,8773G,11916T,14408T,17304T,18998T,22912G,23403G,24805C,25563T,26270T,29540A	1
+66T,241T,445C,1987G,3037T,5730T,6286T,10870T,11781G,14318T,14408T,21255C,22227T,23403G,23644T,25614T,26801G,27944T,28932T,29645T,29739T	1
+66T,241T,445C,1987G,3037T,6286T,10870T,11781G,14408T,18329T,21255C,22227T,23403G,25614T,26801G,27944T,28932T,29645T	1
+66T,241T,538G,1059T,3037T,4324G,9107C,14408T,23029T,23403G,25563T,26543A,28254G	1
+66T,241T,538G,1059T,3037T,9107C,14408T,23403G,23426C,25563T,26070G	1
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+66T,241T,1059T,3037T,14408T,17069T,23403G,25563T,26801T,26864T	1
+66T,6312A,13730T,23929T,28311T	1
+83C,241T,583T,1059T,2468A,3037T,14408T,17410T,23403G,23998G,25553T,25563T,27856C,28893T,29543T	1
+94T,241T,3037T,5365T,13708A,14408T,20233T,22210T,23403G,26097G,28003T,28881A,28882A,28883C	1
+96T,241T,3037T,4113T,14408T,14857T,23403G,25575C	1
+100T,241T,556T,1628A,3037T,8233G,10667G,11824T,12053T,14313C,14408T,17612G,23012A,23403G,25088T,25117T,25575G,25613G,28315T,28378T,28628T,28881A,28882A,28883C,28975T,29754T	1
+100T,241T,2340T,3037T,3766C,10667G,11824T,12053T,12302C,12964G,14408T,23012A,23403G,25088T,27237G,28077T,28245C,28628T,28881A,28882A,28883C,28892T,28975T,29754T	1
+105T,241T,1059T,3037T,10288C,11916T,13821T,14408T,18998T,23403G,25563T,26217T,26625T,29540A,29752T	1
+106T,241T,3037T,8025T,8072G,14408T,23403G,28881A,28882A,28883C	1
+125T,204T,241T,445C,3037T,6286T,14408T,15480T,21255C,21614T,22227T,23403G,26801G,27944T,28932T,29645T	1
+140T,241T,3037T,6582A,14408T,23403G,28881A,28882A,28883C	1
+147A,4540T,6894T,8782T,9477A,14805T,18928T,21489C,25979T,28144C,28311T,28657T,28863T	1
+147T,241T,934T,2536T,3037T,3496T,4331T,6738T,13712G,14408T,14769C,17790T,18486T,20259T,20268G,21753T,22162C,23403G,27903T,28854T	1
+147T,241T,3037T,8917T,9389A,14408T,15720T,23403G,27955T,27972T,28628T,28881A,28882A,28883C,29645T	1
+147T,241T,3037T,9697C,12473T,14408T,19602T,20268G,23266T,23403G,29517G	1
+158G,241T,313T,706T,3037T,4346C,5974T,9286T,10376T,14408T,14708T,23403G,26459G,28725T,28881A,28882A,28883C,29692T	1
+160T,241T,313T,682C,900T,3037T,3259T,4048T,5700A,14408T,14937T,17802T,23403G,23604A,24130T,25721T,25767T,28881A,28882A,28883C,28903T	1
+160T,241T,682C,900T,3037T,3259T,4048T,5700A,14408T,14937T,17802T,23403G,23604A,24130T,25721T,25767T,28881A,28882A,28883C,28903T	1
+169G,241T,3037T,5192T,7224T,8240T,11962T,14408T,16915T,18555T,18877T,23403G,24202C,24916T,25012T,25563T,26534T,26735T,28899T	1
+174T,210T,241T,913T,2453T,2918T,3037T,3267T,5388A,5986T,6954C,14408T,14676T,15279T,16176C,23063T,23271A,23403G,23604A,23709T,24506G,24914C,27972T,28048T,28111G,28280C,28281T,28282A,28881A,28882A,28883C,28977T	1
+174T,210T,241T,913T,2453T,3037T,3267T,5388A,5986T,6954C,14408T,14676T,15279T,16176C,23063T,23271A,23403G,23604A,23709T,24506G,24914C,27972T,28048T,28111G,28280C,28281T,28282A,28881A,28882A,28883C,28977T,29311T	1
+174T,241T,1059T,2692T,3037T,4459G,5230T,10323G,14408T,18846G,21614T,21801C,22206G,22813T,23012A,23063T,23403G,23664T,25563T,25904T,26456T,26645T,28887T	1
+174T,241T,1059T,2692T,3037T,5230T,9049T,10323G,14408T,20405T,21614T,21801C,22206G,22813T,23012A,23063T,23403G,23664T,25563T,25806G,25904T,26456T,26645T,28887T	1
+174T,241T,1059T,3037T,5230T,6525T,10323G,13122A,14408T,15657G,22205C,22813T,23012A,23063T,23403G,23664T,23905A,25171C,25563T,25904T,26456T,27516A,27933A,28887T	1
+174T,241T,1059T,3037T,5230T,9142T,10323G,14408T,19524T,21801C,22206G,22813T,23012A,23063T,23403G,23664T,25563T,25904T,26456T,28887T	1
+174T,241T,1059T,3037T,14408T,23403G,25546T,25563T	1
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_mutations_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_mutations_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,3841 @@
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_node_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_node_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1936 @@
+node	leaf_count	mut_count	mut_density	rev_from_lineage
+England/BRIS-1853249/2020|20-04-02	1	1	1	0
+NPL/61-TW/2020|MT072688.1|20-01-13	1	0	0	0
+node_2	2	2	1	0
+Wales/PHWC-25B04/2020|20-03-24	1	1	1	0
+Wales/LIVE-A6831/2020|20-03-16	1	1	1	0
+node_3	2	3	1.5	0
+Scotland/EDB1317/2020|20-04-09	1	2	2	1
+Scotland/EDB354/2020|20-03-30	1	1	1	0
+node_4	2	4	2	0
+England/SHEF-BFF8B/2020|20-03-25	1	1	1	0
+England/LCST-24D7202/2020|20-06-22	1	3	3	0
+England/SHEF-BFF21/2020|20-03-25	1	0	0	0
+node_7	2	4	2	0
+England/LIVE-A4C46/2020|20-03-12	1	3	3	0
+node_6	3	8	2.66667	0
+node_5	4	10	2.5	0
+England/SHEF-BFFC7/2020|20-03-25	1	1	1	0
+England/PHEC-1E01E/2020|20-04-03	1	1	1	0
+node_8	2	3	1.5	0
+DP0476/2020|LC571003.1|20-02-16	1	1	1	0
+DP0191/2020|LC570980.1|20-02-15	1	1	1	0
+node_9	2	3	1.5	0
+Switzerland/100159/2020|LR884273.1|20-03-16	1	1	1	0
+England/LOND-126031F/2020|20-03-15	1	1	1	0
+node_12	2	3	1.5	0
+Scotland/EDB046/2020|20-03-15	1	2	2	1
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16	1	1	1	0
+USA/NY-QDX-1969/2020|MW190709.1|20-03-15	1	0	0	0
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_roho_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_roho_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,58 @@
+mutation	parent_node	child_count	occurrence_node	offspring_with	median_offspring_without	single_roho
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+C8782T	node_1	22	node_676	31	16	0.287242	
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+G29711T	node_1	22	node_667	6	28	-0.669007	
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+T28688C	node_1	22	node_699	6	28	-0.669007	
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+A26530G	node_28	55	node_354	8	39	-0.687975	
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+C6941T	node_28	55	node_268	6	39	-0.812913	
+G16968T	node_28	55	node_654	6	39	-0.812913	
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+G21624T	node_427	128	node_566	8	10	-0.09691	
+G21724T	node_427	128	node_589	6	10	-0.221849	
+G25617T	node_427	128	node_583	10	9	0.0457575	
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_sample_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_sample_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1235 @@
+sample	parsimony	parent_id
+England/BRIS-1853249/2020|20-04-02	1	node_2
+NPL/61-TW/2020|MT072688.1|20-01-13	0	node_2
+Wales/PHWC-25B04/2020|20-03-24	1	node_3
+Wales/LIVE-A6831/2020|20-03-16	1	node_3
+Scotland/EDB1317/2020|20-04-09	2	node_4
+Scotland/EDB354/2020|20-03-30	1	node_4
+England/SHEF-BFF8B/2020|20-03-25	1	node_5
+England/LCST-24D7202/2020|20-06-22	3	node_7
+England/SHEF-BFF21/2020|20-03-25	0	node_7
+England/LIVE-A4C46/2020|20-03-12	3	node_6
+England/SHEF-BFFC7/2020|20-03-25	1	node_8
+England/PHEC-1E01E/2020|20-04-03	1	node_8
+DP0476/2020|LC571003.1|20-02-16	1	node_9
+DP0191/2020|LC570980.1|20-02-15	1	node_9
+Switzerland/100159/2020|LR884273.1|20-03-16	1	node_12
+England/LOND-126031F/2020|20-03-15	1	node_12
+Scotland/EDB046/2020|20-03-15	2	node_11
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16	1	node_13
+USA/NY-QDX-1969/2020|MW190709.1|20-03-15	0	node_13
+Wales/PHWC-285F4/2020|20-04-01	4	node_14
+England/BRIS-130965/2020|20-04-13	2	node_14
+Scotland/CVR44/2020|20-03-13	1	node_15
+Scotland/CVR839/2020|20-03-27	2	node_15
+Scotland/GCVR-170107/2020|20-03-23	3	node_16
+Scotland/CVR207/2020|20-03-18	1	node_16
+England/NORT-284A9B/2020|20-03-25	2	node_17
+Scotland/CVR10/2020|20-03-10	2	node_17
+England/EXET-135818/2020|20-04-11	3	node_10
+England/BRIS-12EEB6/2020|20-04-22	3	node_18
+Scotland/EDB199/2020|20-03-26	2	node_18
+England/CAMB-74A09/2020|20-03-18	3	node_19
+England/ALDP-9EE3AC/2020|20-05-06	1	node_19
+England/CAMB-8042A/2020|20-04-10	1	node_20
+England/CAMB-737B8/2020|20-03-30	2	node_20
+USA/WA-S885/2020|MT642386.1|20-04-22	2	node_21
+USA/UT-QDX-1870/2020|MW190618.1|20-03-16	2	node_21
+USA/WA3-UW1/2020|MT163716.1|20-02-27	2	node_22
+SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29	1	node_22
+England/BRIS-1265AA/2020|20-04-10	3	node_23
+AUS/NT38/2020|MT641726.1|20	4	node_23
+England/LIVE-A5D06/2020|20-03-17	2	node_24
+England/LIVE-A065B/2020|20-05-27	6	node_24
+France/40002VJ/2020|MT470179.1|20-03	3	node_26
+Wales/PHWC-310CA/2020|20-04-11	4	node_27
+England/BRIS-123965/2020|20-04-07	2	node_29
+England/BRIS-125347/2020|20-03-27	0	node_29
+IND/Isolate_9088/2020|MW555597.1|20-06-30	2	node_30
+IND/763/2020|MT577009.1|20	0	node_30
+England/CAMB-76515/2020|20-03-29	1	node_32
+England/CAMB-1AE294/2020|20-04-27	3	node_32
+England/LEED-2A8D10/2020|20-03-31	1	node_33
+England/CAMB-1AC6F4/2020|20-04-21	3	node_33
+Scotland/EDB2049/2020|20-04-18	1	node_36
+Scotland/EDB2100/2020|20-04-19	0	node_36
+England/CAMB-1AC7D3/2020|20-04-22	1	node_35
+England/CAMB-7EBDF/2020|20-04-07	2	node_34
+England/MILK-BB0F16/2020|20-11-17	2	node_37
+England/CAMC-BBDD4C/2020|20-11-22	5	node_37
+Scotland/CVR2381/2020|20-04-13	1	node_38
+Scotland/CVR2197/2020|20-04-11	1	node_38
+Scotland/CVR3417/2020|20-05-07	3	node_39
+Scotland/CVR1519/2020|20-04-03	1	node_39
+England/MILK-93B73B/2020|20-06-21	3	node_40
+England/MILK-9589F6/2020|20-06-15	2	node_40
+England/BRIS-128441/2020|20-04-16	2	node_41
+England/CAMB-7C39D/2020|20-04-13	3	node_41
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+England/ALDP-50085E/2020|20-06-27	5	node_44
+England/PHEC-127E8/2020|20-03-28	0	node_44
+England/CAMB-75BD8/2020|20-03-29	1	node_45
+UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01	5	node_45
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+USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29	1	node_47
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+USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29	1	node_66
+England/CAMB-7A7DF/2020|20-04-02	1	node_67
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+England/CAMB-83FBD/2020|20-04-22	0	node_72
+England/CAMB-1AD004/2020|20-04-30	1	node_72
+USA/FL-BPHL-1022/2020|MT966234.1|20-07-20	4	node_74
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+Scotland/EDB11343/2020|20-12-26	3	node_77
+Scotland/EDB11342/2020|20-12-26	2	node_77
+England/QEUH-CAF17D/2020|20-12-15	2	node_76
+England/LIVE-DAB556/2020|20-10-18	7	node_78
+England/PHEC-14DE93/2020|20-11-11	5	node_78
+Wales/PHWC-1658A6/2020|20-05-19	3	node_79
+Wales/PHWC-2E0A2/2020|20-04-10	1	node_79
+England/ALDP-952A53/2020|20-06-13	3	node_80
+England/ALDP-95A745/2020|20-06-13	3	node_80
+Scotland/EDB3137/2020|20-04-06	2	node_81
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+USA/CA-QDX-434/2020|MW064457.1|20-03-20	2	node_82
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+USA/CA-CZB-1275/2020|MT533209.1|20-04-16	2	node_93
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+USA/CA-CZB-5668/2020|MW276489.1|20-08-08	5	node_95
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+England/MILK-6166F0/2020|20-07-05	1	node_99
+England/ALDP-9BCA93/2020|20-09-09	3	node_99
+ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19	2	node_100
+England/CAMC-947D3A/2020|20-07-17	5	node_100
+USA/WI-UW-1126/2020|MT929103.1|20-08-13	6	node_101
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_21_sampleclades_stats.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_21_sampleclades_stats.tabular	Mon Feb 02 14:38:06 2026 +0000
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+England/CAMC-C2CDFC/2020|20-12-07	20A	B.1.36.10
+England/MILK-CAA0EE/2020|20-12-18	20A	B.1.36.10
+England/MILK-A1BC04/2020|20-10-03	20A	B.1.160
+England/QEUH-96A29C/2020|20-08-13	20A	B.1.471
+England/ALDP-9EA6D4/2020|20-09-24	20A	B.1.471
+England/MILK-A6AEC4/2020|20-10-09	20A	B.1.472
+England/MILK-B889A0/2020|20-11-14	20A	B.1.472
+England/MILK-ACC08E/2020|20-10-21	20A	B.1.258
+England/ALDP-9BE8B5/2020|20-09-09	20E.EU1	B.1.177.21
+Scotland/EDB10724/2020|20-12-04	20E.EU1	B.1.177.21
+Scotland/CVR4309/2020|20-09-14	20E.EU1	B.1.177.22
+England/QEUH-AE4EA4/2020|20-10-27	20E.EU1	B.1.177.2
+England/ALDP-9BECB9/2020|20-09-10	20E.EU1	B.1.177.2
+Wales/PHWC-16E6A3/2020|20-10-02	20E.EU1	B.1.177.3
+England/MILK-9A9D09/2020|20-09-01	20E.EU1	B.1.177.3
+England/QEUH-B6C0E9/2020|20-11-11	20E.EU1	B.1.177.4
+England/CAMC-AEA62E/2020|20-10-25	20E.EU1	B.1.177.4
+Wales/PHWC-360A7/2020|20-04-29	20B	B.1.1.289
+Wales/PHWC-260AA/2020|20-03-24	20B	B.1.1.289
+England/BRIS-185470D/2020|20-05-01	20B	B.1.1.2
+England/BRIS-12AF02/2020|20-05-01	20B	B.1.1.2
+England/MILK-11A5634/2021|21-01-29	20B	B.1.316
+GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12	20B	B.1.316
+USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08	20B	R.2
+USA/MA-MGH-03951/2021|MW617773.1|21-01-22	20B	R.2
+USA/MD-MDH-0841/2021|MW621433.1|21-01-17	20J/501Y.V3	B.1.1.28
+USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11	20J/501Y.V3	B.1.1.28
+England/NORW-222D0F/2020|20-12-20	20B	P.2
+England/MILK-F72F49/2021|21-01-05	20B	P.2
+USA/FL-CDC-21490280/2021|MW667214.1|21-01-27	20B	B.1.1.143
+USA/NY-CDC-21712201/2021|MW668883.1|21-02-04	20B	B.1.1.143
+England/CAMB-72B44/2020|20-03-22	20D	C.6
+England/CAMB-822D3/2020|20-04-12	20D	C.6
+England/ALDP-94DD07/2020|20-06-19	20D	C.3
+England/ALDP-49EC3C/2020|20-05-20	20D	C.3
+PER/covper024/2020|MW030255.1|20-07-04	20D	C.14
+PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08	20D	C.14
+PER/covper011/2020|MW030242.1|20-07-04	20D	C.13
+PER/covper040/2020|MW030271.1|20-05-05	20D	C.13
+England/MILK-B1553B/2020|20-10-23	20D	C.1
+England/MILK-66F889/2020|20-07-03	20D	C.1
+USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31	20D	C.16
+England/LOND-12F65DC/2021|21-01-19	20D	C.16
+Switzerland/310500/2020|LR898805.1|20-10-08	20D	C.5
+Switzerland/300433/2020|LR898634.1|20-09-29	20D	C.5
+England/QEUH-96BAA2/2020|20-08-14	20D	C.2
+Wales/ALDP-B19FFD/2020|20-11-01	20D	C.2
+SRB/NS19622-16-06/2020|MW327528.1|20-06-15	20D	C.4
+PER/covper018/2020|MW030249.1|20-07-03	20D	C.4
+EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02	20B	B.1.1.292
+EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02	20B	B.1.1.292
+England/MILK-9A699F/2020|20-09-01	20B	B.1.1.294
+England/CAMC-C3E586/2020|20-12-10	20B	B.1.1.293
+England/CAMC-DE5550/2020|20-12-29	20B	B.1.1.293
+England/ALDP-A525BB/2020|20-10-07	20B	B.1.1.50
+ISR/NH_M2_0614/2020|MW194121.1|20-06-14	20B	B.1.1.50
+England/MILK-A45AF8/2020|20-10-06	20B	B.1.1.209
+Scotland/QEUH-A613BF/2020|20-10-13	20B	B.1.1.209
+Switzerland/180039/2020|LR861669.1|20-07-01	20B	B.1.1.47
+Switzerland/220022/2020|LR882244.1|20-07-27	20B	B.1.1.47
+Japan/TKYE627000_2020/2020|LC593811.1|20-08	20B	B.1.1.284
+Japan/TKYE624705_2020/2020|LC593810.1|20-07	20B	B.1.1.284
+IND/GBRC455b/2020|MW600453.1|20-12-24	20B	B.1.1.179
+IND/GBRC455a/2020|MW600436.1|20-12-24	20B	B.1.1.179
+BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08	20B	B.1.1.33
+USA/WI-UW-114/2020|MT706234.1|20-03-30	20B	B.1.1.33
+England/CAMC-947392/2020|20-07-18	20B	B.1.146
+England/MILK-977469/2020|20-07-24	20B	B.1.146
+AUS/VIC9179/2020|MW153248.1|20-08-21	20F	D.2
+AUS/VIC11646/2020|MW155572.1|20-07-22	20F	D.2
+Scotland/EDB11343/2020|20-12-26	20H/501Y.V2	B.1.351
+Scotland/EDB11342/2020|20-12-26	20H/501Y.V2	B.1.351
+USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08	20C	B.1.429
+USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20	20C	B.1.429
+England/CAMC-A65DDB/2020|20-10-11	20A	B.1.36.1
+England/CAMC-AAF5A0/2020|20-10-22	20A	B.1.36.1
+England/MILK-A192C8/2020|20-10-01	20A	B.1.36.28
+England/QEUH-9F3FDD/2020|20-09-24	20A	B.1.36.28
+England/MILK-ABBF2B/2020|20-10-22	20A	B.1.36.17
+England/QEUH-96A85E/2020|20-08-14	20A	B.1.36.17
+HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06	20A	B.1.36.27
+HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06	20A	B.1.36.27
+England/PHEC-149F0D/2020|20-11-19	20A	B.1.36.21
+England/MILK-BE717A/2020|20-11-29	20A	B.1.36.21
+CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04	20A	B.1.36.26
+Scotland/QEUH-BEAF22/2020|20-12-04	20A	B.1.36.26
+England/MILK-A230C1/2020|20-10-03	20A.EU2	B.1.160
+Scotland/QEUH-9696CE/2020|20-08-14	20A	B.1.258
+England/CAMC-B3582D/2020|20-11-05	20A	B.1.258.14
+England/MILK-A796E8/2020|20-10-14	20A	B.1.258.14
+Northern_Ireland/QEUH-969C53/2020|20-08-14	20A	B.1.258.2
+England/ALDP-9E79B0/2020|20-09-24	20A	B.1.258.3
+England/MILK-B561FE/2020|20-11-06	20A	B.1.258.3
+England/CAMC-9DFBC4/2020|20-09-21	20E.EU1	B.1.177.6
+England/QEUH-AD1165/2020|20-10-25	20E.EU1	B.1.177.6
+England/ALDP-FB5E3E/2021|21-01-11	20E.EU1	B.1.177.12
+England/ALDP-E8756E/2021|21-01-04	20E.EU1	B.1.177.12
+England/ALDP-A2EAE6/2020|20-10-05	20E.EU1	B.1.177.5
+Scotland/QEUH-A636C3/2020|20-10-10	20E.EU1	B.1.177.5
+England/QEUH-A76C07/2020|20-10-12	20E.EU1	B.1.177.7
+England/MILK-AC7997/2020|20-10-21	20E.EU1	B.1.177.7
+Scotland/QEUH-9DC927/2020|20-09-22	20E.EU1	B.1.177.8
+Scotland/QEUH-9B75D3/2020|20-09-04	20E.EU1	B.1.177.8
+England/CAMC-AEACFF/2020|20-10-25	20B	B.1.1.294
+USA/FL-BPHL-2014/2020|MW286586.1|20-06-19	20B	N.1
+USA/MA_MGH_00693/2020|MT520290.1|20-04-06	20B	N.1
+CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	20B	N.4
+CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27	20B	N.4
+ARG/Cordoba-2858/2020|MW633904.1|20-09-14	20B	N.3
+ARG/Cordoba-1484/2020|MW633909.1|20-09-17	20B	N.3
+England/MILK-97356A/2020|20-08-14	20A.EU2	B.1.160
+England/MILK-9A9F7C/2020|20-08-31	20A	B.1.258.16
+England/OXON-F42364/2020|20-12-18	20A	B.1.258.16
+England/MILK-9C2766/2020|20-09-10	20A	G.1
+England/ALDP-A95A9F/2020|20-10-19	20A	G.1
+England/PHEC-149FA3/2020|20-11-20	20B	M.1
+England/QEUH-C9332B/2020|20-12-17	20B	M.1
+England/CAMC-A649C9/2020|20-10-10	20A.EU2	B.1.160.7
+England/MILK-B04890/2020|20-10-24	20A.EU2	B.1.160.7
+England/CAMC-A57F03/2020|20-10-09	20A	B.1.258.6
+England/MILK-A7D15C/2020|20-10-13	20A	B.1.258.6
+Wales/PHWC-47F3A5/2020|20-10-07	20A	B.1.258.7
+England/ALDP-A85BCC/2020|20-10-17	20A	B.1.258.7
+England/ALDP-A2FCA3/2020|20-10-05	20A	B.1.258.10
+Scotland/MILK-A69E6B/2020|20-10-09	20A	B.1.258.10
+England/MILK-A7D1A7/2020|20-10-13	20A	B.1.258.12
+England/MILK-A91486/2020|20-10-16	20A	B.1.258.12
+AUT/2021006354/2021|MW672357.1|21-02	20A	B.1.258.17
+England/MILK-E7F4C6/2021|21-01-02	20A	B.1.258.17
+England/ALDP-AA169C/2020|20-10-22	20A	B.1.258.4
+England/MILK-A474DA/2020|20-10-06	20A	B.1.258.4
+England/ALDP-B483EA/2020|20-11-07	20A	B.1.258.5
+England/QEUH-AA0035/2020|20-10-20	20A	B.1.258.5
diff -r 000000000000 -r 359daa4b6d10 test-data/test_22_parent_placements.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_22_parent_placements.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,3240 @@
+placement	sample
+England/BRIS-1853249/2020|20-04-02	England/BRIS-1853249/2020|20-04-02
+node_1	England/BRIS-1853249/2020|20-04-02
+Scotland/EDB1317/2020|20-04-09	England/BRIS-1853249/2020|20-04-02
+node_658	England/BRIS-1853249/2020|20-04-02
+node_673	England/BRIS-1853249/2020|20-04-02
+Wales/PHWC-25B04/2020|20-03-24	Wales/PHWC-25B04/2020|20-03-24
+node_1	Wales/PHWC-25B04/2020|20-03-24
+Scotland/EDB1317/2020|20-04-09	Wales/PHWC-25B04/2020|20-03-24
+node_658	Wales/PHWC-25B04/2020|20-03-24
+node_673	Wales/PHWC-25B04/2020|20-03-24
+NPL/61-TW/2020|MT072688.1|20-01-13	NPL/61-TW/2020|MT072688.1|20-01-13
+node_2	NPL/61-TW/2020|MT072688.1|20-01-13
+Wales/LIVE-A6831/2020|20-03-16	Wales/LIVE-A6831/2020|20-03-16
+node_1	Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB1317/2020|20-04-09	Wales/LIVE-A6831/2020|20-03-16
+node_658	Wales/LIVE-A6831/2020|20-03-16
+node_673	Wales/LIVE-A6831/2020|20-03-16
+Scotland/EDB1317/2020|20-04-09	Scotland/EDB1317/2020|20-04-09
+node_1	Scotland/EDB1317/2020|20-04-09
+node_658	Scotland/EDB1317/2020|20-04-09
+node_673	Scotland/EDB1317/2020|20-04-09
+Scotland/EDB354/2020|20-03-30	Scotland/EDB354/2020|20-03-30
+node_1	Scotland/EDB354/2020|20-03-30
+Scotland/EDB1317/2020|20-04-09	Scotland/EDB354/2020|20-03-30
+node_658	Scotland/EDB354/2020|20-03-30
+node_673	Scotland/EDB354/2020|20-03-30
+England/SHEF-BFF8B/2020|20-03-25	England/SHEF-BFF8B/2020|20-03-25
+node_5	England/SHEF-BFF8B/2020|20-03-25
+England/LCST-24D7202/2020|20-06-22	England/LCST-24D7202/2020|20-06-22
+node_7	England/LCST-24D7202/2020|20-06-22
+England/SHEF-BFFC7/2020|20-03-25	England/SHEF-BFFC7/2020|20-03-25
+node_1	England/SHEF-BFFC7/2020|20-03-25
+Scotland/EDB1317/2020|20-04-09	England/SHEF-BFFC7/2020|20-03-25
+node_658	England/SHEF-BFFC7/2020|20-03-25
+node_673	England/SHEF-BFFC7/2020|20-03-25
+England/PHEC-1E01E/2020|20-04-03	England/PHEC-1E01E/2020|20-04-03
+node_1	England/PHEC-1E01E/2020|20-04-03
+Scotland/EDB1317/2020|20-04-09	England/PHEC-1E01E/2020|20-04-03
+node_658	England/PHEC-1E01E/2020|20-04-03
+node_673	England/PHEC-1E01E/2020|20-04-03
+DP0476/2020|LC571003.1|20-02-16	DP0476/2020|LC571003.1|20-02-16
+node_9	DP0476/2020|LC571003.1|20-02-16
+DP0191/2020|LC570980.1|20-02-15	DP0191/2020|LC570980.1|20-02-15
+node_9	DP0191/2020|LC570980.1|20-02-15
+England/LIVE-A5D06/2020|20-03-17	England/LIVE-A5D06/2020|20-03-17
+node_1	England/LIVE-A5D06/2020|20-03-17
+Scotland/EDB1317/2020|20-04-09	England/LIVE-A5D06/2020|20-03-17
+node_658	England/LIVE-A5D06/2020|20-03-17
+node_673	England/LIVE-A5D06/2020|20-03-17
+England/LIVE-A065B/2020|20-05-27	England/LIVE-A065B/2020|20-05-27
+node_1	England/LIVE-A065B/2020|20-05-27
+Scotland/EDB1317/2020|20-04-09	England/LIVE-A065B/2020|20-05-27
+node_658	England/LIVE-A065B/2020|20-05-27
+node_673	England/LIVE-A065B/2020|20-05-27
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01	USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+node_1	USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+Scotland/EDB1317/2020|20-04-09	USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+node_658	USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+node_673	USA/CA-CZB-1091/2020|MT460091.1|20-05-01
+USA/CA-CZB-11876/2020|MW276506.1|20-04-08	USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+node_1	USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+Scotland/EDB1317/2020|20-04-09	USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+node_658	USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+node_673	USA/CA-CZB-11876/2020|MW276506.1|20-04-08
+USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+node_1	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+Scotland/EDB1317/2020|20-04-09	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+node_658	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+node_673	USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24
+NED/NB02_13KS/2020|MT457397.1|20-04-29	NED/NB02_13KS/2020|MT457397.1|20-04-29
+node_1	NED/NB02_13KS/2020|MT457397.1|20-04-29
+Scotland/EDB1317/2020|20-04-09	NED/NB02_13KS/2020|MT457397.1|20-04-29
+node_658	NED/NB02_13KS/2020|MT457397.1|20-04-29
+node_673	NED/NB02_13KS/2020|MT457397.1|20-04-29
+USA/CA-QDX-1986/2020|MW190732.1|20-03-18	USA/CA-QDX-1986/2020|MW190732.1|20-03-18
+node_663	USA/CA-QDX-1986/2020|MW190732.1|20-03-18
+USA/CA-CZB-1250/2020|MT534320.1|20-04-12	USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+node_1	USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+Scotland/EDB1317/2020|20-04-09	USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+node_658	USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+node_673	USA/CA-CZB-1250/2020|MT534320.1|20-04-12
+USA/CA-CZB-1015/2020|MT438733.1|20-04-22	USA/CA-CZB-1015/2020|MT438733.1|20-04-22
+node_664	USA/CA-CZB-1015/2020|MT438733.1|20-04-22
+USA/CA-CZB-1073/2020|MT449664.1|20-04-21	USA/CA-CZB-1073/2020|MT449664.1|20-04-21
+node_664	USA/CA-CZB-1073/2020|MT449664.1|20-04-21
+England/BRIS-1258A2/2020|20-03-29	England/BRIS-1258A2/2020|20-03-29
+node_665	England/BRIS-1258A2/2020|20-03-29
+England/SHEF-BFEBB/2020|20-03-24	England/SHEF-BFEBB/2020|20-03-24
+node_665	England/SHEF-BFEBB/2020|20-03-24
+USA/CA-CZB-1041/2020|MT438759.1|20-04-22	USA/CA-CZB-1041/2020|MT438759.1|20-04-22
+node_666	USA/CA-CZB-1041/2020|MT438759.1|20-04-22
+USA/CA-CZB-1051/2020|MT449644.1|20-04-06	USA/CA-CZB-1051/2020|MT449644.1|20-04-06
+node_666	USA/CA-CZB-1051/2020|MT449644.1|20-04-06
+England/LIVE-9E66F/2020|20-04-10	England/LIVE-9E66F/2020|20-04-10
+node_1	England/LIVE-9E66F/2020|20-04-10
+Scotland/EDB1317/2020|20-04-09	England/LIVE-9E66F/2020|20-04-10
+node_658	England/LIVE-9E66F/2020|20-04-10
+node_673	England/LIVE-9E66F/2020|20-04-10
+Scotland/CVR705/2020|20-03-26	Scotland/CVR705/2020|20-03-26
+node_1	Scotland/CVR705/2020|20-03-26
+Scotland/EDB1317/2020|20-04-09	Scotland/CVR705/2020|20-03-26
+node_658	Scotland/CVR705/2020|20-03-26
+node_673	Scotland/CVR705/2020|20-03-26
+England/SHEF-BFF21/2020|20-03-25	England/SHEF-BFF21/2020|20-03-25
+node_7	England/SHEF-BFF21/2020|20-03-25
+England/LIVE-A4C46/2020|20-03-12	England/LIVE-A4C46/2020|20-03-12
+node_6	England/LIVE-A4C46/2020|20-03-12
+Switzerland/100159/2020|LR884273.1|20-03-16	Switzerland/100159/2020|LR884273.1|20-03-16
+node_12	Switzerland/100159/2020|LR884273.1|20-03-16
+England/EXET-135818/2020|20-04-11	England/EXET-135818/2020|20-04-11
+node_1	England/EXET-135818/2020|20-04-11
+Scotland/EDB1317/2020|20-04-09	England/EXET-135818/2020|20-04-11
+Scotland/EDB046/2020|20-03-15	England/EXET-135818/2020|20-04-11
+Scotland/CVR10/2020|20-03-10	England/EXET-135818/2020|20-04-11
+node_658	England/EXET-135818/2020|20-04-11
+node_673	England/EXET-135818/2020|20-04-11
+France/40002VJ/2020|MT470179.1|20-03	France/40002VJ/2020|MT470179.1|20-03
+node_1	France/40002VJ/2020|MT470179.1|20-03
+Scotland/EDB1317/2020|20-04-09	France/40002VJ/2020|MT470179.1|20-03
+Wales/PHWC-310CA/2020|20-04-11	France/40002VJ/2020|MT470179.1|20-03
+node_191	France/40002VJ/2020|MT470179.1|20-03
+node_658	France/40002VJ/2020|MT470179.1|20-03
+node_673	France/40002VJ/2020|MT470179.1|20-03
+England/NOTT-10E1B3/2020|20-03-19	France/40002VJ/2020|MT470179.1|20-03
+Wales/PHWC-310CA/2020|20-04-11	Wales/PHWC-310CA/2020|20-04-11
+node_10	Wales/PHWC-310CA/2020|20-04-11
+node_20	Wales/PHWC-310CA/2020|20-04-11
+Scotland/GCVR-171160/2020|20-03-26	Scotland/GCVR-171160/2020|20-03-26
+node_1	Scotland/GCVR-171160/2020|20-03-26
+Scotland/EDB1317/2020|20-04-09	Scotland/GCVR-171160/2020|20-03-26
+node_658	Scotland/GCVR-171160/2020|20-03-26
+node_673	Scotland/GCVR-171160/2020|20-03-26
+England/BRIS-130E2A/2020|20-03-24	England/BRIS-130E2A/2020|20-03-24
+node_1	England/BRIS-130E2A/2020|20-03-24
+Scotland/EDB1317/2020|20-04-09	England/BRIS-130E2A/2020|20-03-24
+node_658	England/BRIS-130E2A/2020|20-03-24
+node_673	England/BRIS-130E2A/2020|20-03-24
+USA/WI-UW-298/2020|MT706406.1|20-04-13	USA/WI-UW-298/2020|MT706406.1|20-04-13
+node_669	USA/WI-UW-298/2020|MT706406.1|20-04-13
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+Scotland/CVR3488/2020|20-05-12	Scotland/CVR3488/2020|20-05-12
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+Scotland/CVR780/2020|20-03-27	Scotland/CVR780/2020|20-03-27
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+Scotland/EDB5629/2020|20-03-24	Scotland/EDB5629/2020|20-03-24
+node_679	Scotland/EDB5629/2020|20-03-24
+HKG/HKU-904a/2020|MT365032.1|20-01-30	HKG/HKU-904a/2020|MT365032.1|20-01-30
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+Scotland/EDB5040/2020|20-04-02	Scotland/EDB5040/2020|20-04-02
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+Scotland/EDB046/2020|20-03-15	Scotland/EDB046/2020|20-03-15
+node_1	Scotland/EDB046/2020|20-03-15
+Scotland/EDB1317/2020|20-04-09	Scotland/EDB046/2020|20-03-15
+Scotland/CVR10/2020|20-03-10	Scotland/EDB046/2020|20-03-15
+node_658	Scotland/EDB046/2020|20-03-15
+node_673	Scotland/EDB046/2020|20-03-15
+England/BRIS-12EEB6/2020|20-04-22	England/BRIS-12EEB6/2020|20-04-22
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+Scotland/EDB199/2020|20-03-26	Scotland/EDB199/2020|20-03-26
+node_18	Scotland/EDB199/2020|20-03-26
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+England/LIVE-9D7D6/2020|20-04-15	England/LIVE-9D7D6/2020|20-04-15
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+England/PHEC-1A601/2020|20-03-04	England/PHEC-1A601/2020|20-03-04
+node_699	England/PHEC-1A601/2020|20-03-04
+England/PHEC-2275E/2020|20-06-22	England/PHEC-2275E/2020|20-06-22
+node_699	England/PHEC-2275E/2020|20-06-22
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16	USA/NY-QDX-1999/2020|MW190795.1|20-03-16
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+USA/NY-QDX-1969/2020|MW190709.1|20-03-15	USA/NY-QDX-1969/2020|MW190709.1|20-03-15
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+Wales/PHWC-285F4/2020|20-04-01	Wales/PHWC-285F4/2020|20-04-01
+Scotland/EDB046/2020|20-03-15	Wales/PHWC-285F4/2020|20-04-01
+Scotland/CVR10/2020|20-03-10	Wales/PHWC-285F4/2020|20-04-01
+England/BRIS-130965/2020|20-04-13	England/BRIS-130965/2020|20-04-13
+Scotland/EDB046/2020|20-03-15	England/BRIS-130965/2020|20-04-13
+Scotland/CVR10/2020|20-03-10	England/BRIS-130965/2020|20-04-13
+Scotland/CVR44/2020|20-03-13	Scotland/CVR44/2020|20-03-13
+node_15	Scotland/CVR44/2020|20-03-13
+Scotland/CVR839/2020|20-03-27	Scotland/CVR839/2020|20-03-27
+node_15	Scotland/CVR839/2020|20-03-27
+Scotland/GCVR-170107/2020|20-03-23	Scotland/GCVR-170107/2020|20-03-23
+node_16	Scotland/GCVR-170107/2020|20-03-23
+Scotland/CVR207/2020|20-03-18	Scotland/CVR207/2020|20-03-18
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+England/CAMB-8042A/2020|20-04-10	England/CAMB-8042A/2020|20-04-10
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+Scotland/EDB1317/2020|20-04-09	England/CAMB-737B8/2020|20-03-30
+Scotland/EDB046/2020|20-03-15	England/CAMB-737B8/2020|20-03-30
+Scotland/CVR10/2020|20-03-10	England/CAMB-737B8/2020|20-03-30
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+node_673	England/CAMB-737B8/2020|20-03-30
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+England/BRIS-125347/2020|20-03-27	England/BRIS-125347/2020|20-03-27
+node_29	England/BRIS-125347/2020|20-03-27
+IND/763/2020|MT577009.1|20	IND/763/2020|MT577009.1|20
+node_30	IND/763/2020|MT577009.1|20
+England/CAMB-7772D/2020|20-03-31	England/CAMB-7772D/2020|20-03-31
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+Scotland/EDB1317/2020|20-04-09	England/CAMB-7772D/2020|20-03-31
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+node_673	England/BRIS-12208F/2020|20-03-21
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+England/CAMB-75BD8/2020|20-03-29	England/CAMB-75BD8/2020|20-03-29
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+England/PHEC-2083F/2020|20-04-13	England/PHEC-2083F/2020|20-04-13
+node_402	England/PHEC-2083F/2020|20-04-13
+node_409	England/PHEC-2083F/2020|20-04-13
+Wales/PHWC-16C6F0/2020|20-06-09	Wales/PHWC-16C6F0/2020|20-06-09
+node_405	Wales/PHWC-16C6F0/2020|20-06-09
+Wales/PHWC-27461/2020|20-03-31	Wales/PHWC-27461/2020|20-03-31
+node_407	Wales/PHWC-27461/2020|20-03-31
+Wales/PHWC-29F13/2020|20-04-01	Wales/PHWC-29F13/2020|20-04-01
+node_407	Wales/PHWC-29F13/2020|20-04-01
+IND/GBRC99/2020|MT509504.1|20-05-06	IND/GBRC99/2020|MT509504.1|20-05-06
+node_415	IND/GBRC99/2020|MT509504.1|20-05-06
+IND/GBRC31/2020|MT467247.1|20-04-29	IND/GBRC31/2020|MT467247.1|20-04-29
+node_415	IND/GBRC31/2020|MT467247.1|20-04-29
+AUS/VIC1239/2020|MT451821.1|20-04-02	AUS/VIC1239/2020|MT451821.1|20-04-02
+node_416	AUS/VIC1239/2020|MT451821.1|20-04-02
+AUS/VIC1282/2020|MW153048.1|20-04-08	AUS/VIC1282/2020|MW153048.1|20-04-08
+node_416	AUS/VIC1282/2020|MW153048.1|20-04-08
+IND/GBRC128/2020|MT539172.1|20-05-02	IND/GBRC128/2020|MT539172.1|20-05-02
+node_417	IND/GBRC128/2020|MT539172.1|20-05-02
+IND/GBRC123/2020|MT539176.1|20-05-02	IND/GBRC123/2020|MT539176.1|20-05-02
+node_417	IND/GBRC123/2020|MT539176.1|20-05-02
+POL/PL_MCB_32/2020|MW273814.1|20-04-22	POL/PL_MCB_32/2020|MW273814.1|20-04-22
+node_67	POL/PL_MCB_32/2020|MW273814.1|20-04-22
+England/NOTT-10E1B3/2020|20-03-19	POL/PL_MCB_32/2020|MW273814.1|20-04-22
+POL/PL_MCB_75/2020|MW273857.1|20-04-16	POL/PL_MCB_75/2020|MW273857.1|20-04-16
+node_418	POL/PL_MCB_75/2020|MW273857.1|20-04-16
+England/CAMB-7BED9/2020|20-04-04	England/CAMB-7BED9/2020|20-04-04
+node_419	England/CAMB-7BED9/2020|20-04-04
+Netherlands/NA_302/2020|LR878041.1|20-04-01	Netherlands/NA_302/2020|LR878041.1|20-04-01
+node_419	Netherlands/NA_302/2020|LR878041.1|20-04-01
+USA/WI-UW-1385/2020|MW035549.1|20-09-06	USA/WI-UW-1385/2020|MW035549.1|20-09-06
+node_421	USA/WI-UW-1385/2020|MW035549.1|20-09-06
+USA/TX-DSHS-0975/2020|MW217385.1|20-06-16	USA/TX-DSHS-0975/2020|MW217385.1|20-06-16
+node_421	USA/TX-DSHS-0975/2020|MW217385.1|20-06-16
+Northern_Ireland/NIRE-1022CB/2020|20-03-25	Northern_Ireland/NIRE-1022CB/2020|20-03-25
+node_425	Northern_Ireland/NIRE-1022CB/2020|20-03-25
+Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27	Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27
+node_425	Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27
+Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20	Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20
+node_426	Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20
+node_654	Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20
+GRC/202_32984/2020|MT459870.1|20-03-12	GRC/202_32984/2020|MT459870.1|20-03-12
+node_428	GRC/202_32984/2020|MT459870.1|20-03-12
+USA/FHCRC-19442/2020|MW593677.1|20-07-30	USA/FHCRC-19442/2020|MW593677.1|20-07-30
+node_657	USA/FHCRC-19442/2020|MW593677.1|20-07-30
+USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07	USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07
+node_657	USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07
+Wales/PHWC-31CB7/2020|20-04-14	Wales/PHWC-31CB7/2020|20-04-14
+node_659	Wales/PHWC-31CB7/2020|20-04-14
+Wales/PHWC-26D2B/2020|20-03-30	Wales/PHWC-26D2B/2020|20-03-30
+node_659	Wales/PHWC-26D2B/2020|20-03-30
+MYS/188407/2020|MT372480.1|20-03-18	MYS/188407/2020|MT372480.1|20-03-18
+node_675	MYS/188407/2020|MT372480.1|20-03-18
+AUS/VIC961/2020|MT451653.1|20-03-27	AUS/VIC961/2020|MT451653.1|20-03-27
+node_1	AUS/VIC961/2020|MT451653.1|20-03-27
+Scotland/EDB1317/2020|20-04-09	AUS/VIC961/2020|MT451653.1|20-03-27
+node_658	AUS/VIC961/2020|MT451653.1|20-03-27
+node_673	AUS/VIC961/2020|MT451653.1|20-03-27
+Spain/R11/2020|LR884126.1|20-03-06	Spain/R11/2020|LR884126.1|20-03-06
+node_680	Spain/R11/2020|LR884126.1|20-03-06
+Spain/LP19_4952/2020|LR884066.1|20-03-07	Spain/LP19_4952/2020|LR884066.1|20-03-07
+node_680	Spain/LP19_4952/2020|LR884066.1|20-03-07
+USA/COVID20-0008/2020|MT764174.1|20-03-10	USA/COVID20-0008/2020|MT764174.1|20-03-10
+node_697	USA/COVID20-0008/2020|MT764174.1|20-03-10
+USA/IL-CDC-IL2/2020|MT044257.1|20-01-28	USA/IL-CDC-IL2/2020|MT044257.1|20-01-28
+node_697	USA/IL-CDC-IL2/2020|MT044257.1|20-01-28
+USA/CA-QDX-1421/2020|MW065371.1|20-03-18	USA/CA-QDX-1421/2020|MW065371.1|20-03-18
+node_700	USA/CA-QDX-1421/2020|MW065371.1|20-03-18
+USA/CA-QDX-2080/2020|MW190832.1|20-03-19	USA/CA-QDX-2080/2020|MW190832.1|20-03-19
+node_700	USA/CA-QDX-2080/2020|MW190832.1|20-03-19
+England/CAMB-76515/2020|20-03-29	England/CAMB-76515/2020|20-03-29
+node_32	England/CAMB-76515/2020|20-03-29
+England/CAMB-1AE294/2020|20-04-27	England/CAMB-1AE294/2020|20-04-27
+node_32	England/CAMB-1AE294/2020|20-04-27
+England/LEED-2A8D10/2020|20-03-31	England/LEED-2A8D10/2020|20-03-31
+node_33	England/LEED-2A8D10/2020|20-03-31
+England/CAMB-1AC6F4/2020|20-04-21	England/CAMB-1AC6F4/2020|20-04-21
+England/NORW-E75A6/2020|20-05-04	England/CAMB-1AC6F4/2020|20-04-21
+England/NOTT-10E1B3/2020|20-03-19	England/CAMB-1AC6F4/2020|20-04-21
+Scotland/EDB2049/2020|20-04-18	Scotland/EDB2049/2020|20-04-18
+node_36	Scotland/EDB2049/2020|20-04-18
+England/CAMB-7EBDF/2020|20-04-07	England/CAMB-7EBDF/2020|20-04-07
+node_34	England/CAMB-7EBDF/2020|20-04-07
+Scotland/CVR3417/2020|20-05-07	Scotland/CVR3417/2020|20-05-07
+England/NORW-E75A6/2020|20-05-04	Scotland/CVR3417/2020|20-05-07
+England/NOTT-10E1B3/2020|20-03-19	Scotland/CVR3417/2020|20-05-07
+Scotland/CVR1519/2020|20-04-03	Scotland/CVR1519/2020|20-04-03
+node_39	Scotland/CVR1519/2020|20-04-03
+England/MILK-93B73B/2020|20-06-21	England/MILK-93B73B/2020|20-06-21
+England/NORW-E75A6/2020|20-05-04	England/MILK-93B73B/2020|20-06-21
+England/NOTT-10E1B3/2020|20-03-19	England/MILK-93B73B/2020|20-06-21
+England/MILK-9589F6/2020|20-06-15	England/MILK-9589F6/2020|20-06-15
+node_31	England/MILK-9589F6/2020|20-06-15
+node_395	England/MILK-9589F6/2020|20-06-15
+England/BRIS-128441/2020|20-04-16	England/BRIS-128441/2020|20-04-16
+node_41	England/BRIS-128441/2020|20-04-16
+England/CAMB-7C39D/2020|20-04-13	England/CAMB-7C39D/2020|20-04-13
+England/NORW-E75A6/2020|20-05-04	England/CAMB-7C39D/2020|20-04-13
+England/NOTT-10E1B3/2020|20-03-19	England/CAMB-7C39D/2020|20-04-13
+England/ALDP-50085E/2020|20-06-27	England/ALDP-50085E/2020|20-06-27
+England/NORW-E75A6/2020|20-05-04	England/ALDP-50085E/2020|20-06-27
+England/NOTT-10E1B3/2020|20-03-19	England/ALDP-50085E/2020|20-06-27
+England/PHEC-127E8/2020|20-03-28	England/PHEC-127E8/2020|20-03-28
+node_44	England/PHEC-127E8/2020|20-03-28
+USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29	USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29
+node_47	USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29
+USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29	USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29
+node_47	USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29
+USA/FL-BPHL-0540/2020|MT834625.1|20-03-21	USA/FL-BPHL-0540/2020|MT834625.1|20-03-21
+node_56	USA/FL-BPHL-0540/2020|MT834625.1|20-03-21
+CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02	CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02
+node_67	CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02
+node_84	CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	CHL/Santiago-PUC_MVL_0112/2020|MW365482.1|20-04-02
+USA/CA-CZB-1434/2020|MT628140.1|20-03-25	USA/CA-CZB-1434/2020|MT628140.1|20-03-25
+node_62	USA/CA-CZB-1434/2020|MT628140.1|20-03-25
+USA/VA-DCLS-0676/2020|MT911804.1|20-04	USA/VA-DCLS-0676/2020|MT911804.1|20-04
+node_63	USA/VA-DCLS-0676/2020|MT911804.1|20-04
+USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09	USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09
+node_62	USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09
+USA/MI-QDX-476/2020|MW064508.1|20-03-23	USA/MI-QDX-476/2020|MW064508.1|20-03-23
+node_63	USA/MI-QDX-476/2020|MW064508.1|20-03-23
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/FL-BPHL-0401/2020|MT757087.1|20-05-14
+node_211	USA/FL-BPHL-0401/2020|MT757087.1|20-05-14
+USA/CA-CZB-14951/2020|MW565126.1|20-06-06	USA/CA-CZB-14951/2020|MW565126.1|20-06-06
+node_67	USA/CA-CZB-14951/2020|MW565126.1|20-06-06
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/CA-CZB-14951/2020|MW565126.1|20-06-06
+USA/WI-UW-413/2020|MT772562.1|20-04-07	USA/CA-CZB-14951/2020|MW565126.1|20-06-06
+USA/WI-UW-1105/2020|MT929055.1|20-07-24	USA/WI-UW-1105/2020|MT929055.1|20-07-24
+node_267	USA/WI-UW-1105/2020|MT929055.1|20-07-24
+USA/RML-22/2020|MW221270.1|20-08-30	USA/RML-22/2020|MW221270.1|20-08-30
+node_400	USA/RML-22/2020|MW221270.1|20-08-30
+USA/UT-08320/2020|MW206019.1|20-05-15	USA/RML-22/2020|MW221270.1|20-08-30
+Scotland/CVR2931/2020|20-04-22	Scotland/CVR2931/2020|20-04-22
+node_273	Scotland/CVR2931/2020|20-04-22
+Scotland/GCVR-172150/2020|20-03-30	Scotland/GCVR-172150/2020|20-03-30
+node_273	Scotland/GCVR-172150/2020|20-03-30
+England/BRIS-124885/2020|20-03-24	England/BRIS-124885/2020|20-03-24
+node_274	England/BRIS-124885/2020|20-03-24
+England/BRIS-122C4F/2020|20-04-02	England/BRIS-122C4F/2020|20-04-02
+node_274	England/BRIS-122C4F/2020|20-04-02
+USA/WI-UW-1046/2020|MT928999.1|20-07-29	USA/WI-UW-1046/2020|MT928999.1|20-07-29
+node_276	USA/WI-UW-1046/2020|MT928999.1|20-07-29
+USA/TX-DSHS-0409/2020|MW127871.1|20-06-01	USA/TX-DSHS-0409/2020|MW127871.1|20-06-01
+England/PHEC-20C24/2020|20-04-21	USA/TX-DSHS-0409/2020|MW127871.1|20-06-01
+USA/MD-MDH-0227/2020|MW157244.1|20-09-23	USA/TX-DSHS-0409/2020|MW127871.1|20-06-01
+node_306	USA/TX-DSHS-0409/2020|MW127871.1|20-06-01
+England/NOTT-10E1B3/2020|20-03-19	USA/TX-DSHS-0409/2020|MW127871.1|20-06-01
+Scotland/CVR3054/2020|20-04-24	Scotland/CVR3054/2020|20-04-24
+node_272	Scotland/CVR3054/2020|20-04-24
+node_292	Scotland/CVR3054/2020|20-04-24
+node_406	Scotland/CVR3054/2020|20-04-24
+England/MILK-95698F/2020|20-06-06	England/MILK-95698F/2020|20-06-06
+node_304	England/MILK-95698F/2020|20-06-06
+England/CAMB-79ECC/2020|20-04-01	England/CAMB-79ECC/2020|20-04-01
+node_306	England/CAMB-79ECC/2020|20-04-01
+USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09	USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09
+node_305	USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09
+USA/AK-PHL414/2020|MT946886.1|20-06-03	USA/AK-PHL414/2020|MT946886.1|20-06-03
+node_307	USA/AK-PHL414/2020|MT946886.1|20-06-03
+USA/AK-PHL689/2020|MW173160.1|20-06-29	USA/AK-PHL689/2020|MW173160.1|20-06-29
+node_307	USA/AK-PHL689/2020|MW173160.1|20-06-29
+England/MILK-974596/2020|20-08-17	England/MILK-974596/2020|20-08-17
+node_308	England/MILK-974596/2020|20-08-17
+Switzerland/310363/2020|LR898676.1|20-10-07	Switzerland/310363/2020|LR898676.1|20-10-07
+node_309	Switzerland/310363/2020|LR898676.1|20-10-07
+England/MILK-978626/2020|20-07-30	England/MILK-978626/2020|20-07-30
+node_306	England/MILK-978626/2020|20-07-30
+England/NOTT-10E1B3/2020|20-03-19	England/MILK-978626/2020|20-07-30
+England/MILK-9A565D/2020|20-09-03	England/MILK-9A565D/2020|20-09-03
+node_306	England/MILK-9A565D/2020|20-09-03
+England/NOTT-10E1B3/2020|20-03-19	England/MILK-9A565D/2020|20-09-03
+USA/NM-QDX-264/2020|MT806796.1|20-04-30	USA/NM-QDX-264/2020|MT806796.1|20-04-30
+node_306	USA/NM-QDX-264/2020|MT806796.1|20-04-30
+England/NOTT-10E1B3/2020|20-03-19	USA/NM-QDX-264/2020|MT806796.1|20-04-30
+USA/CA-CZB-10902/2020|MW276406.1|20-08-19	USA/CA-CZB-10902/2020|MW276406.1|20-08-19
+Scotland/EDB156/2020|20-03-23	USA/CA-CZB-10902/2020|MW276406.1|20-08-19
+node_306	USA/CA-CZB-10902/2020|MW276406.1|20-08-19
+England/NOTT-10E1B3/2020|20-03-19	USA/CA-CZB-10902/2020|MW276406.1|20-08-19
+Scotland/EDB1198/2020|20-04-08	Scotland/EDB1198/2020|20-04-08
+node_306	Scotland/EDB1198/2020|20-04-08
+England/NOTT-10E1B3/2020|20-03-19	Scotland/EDB1198/2020|20-04-08
+England/PHEC-20A84/2020|20-04-20	England/PHEC-20A84/2020|20-04-20
+node_306	England/PHEC-20A84/2020|20-04-20
+England/NOTT-10E1B3/2020|20-03-19	England/PHEC-20A84/2020|20-04-20
+Scotland/EDB6324/2020|20-06-01	Scotland/EDB6324/2020|20-06-01
+node_306	Scotland/EDB6324/2020|20-06-01
+England/NOTT-10E1B3/2020|20-03-19	Scotland/EDB6324/2020|20-06-01
+Scotland/EDB4579/2020|20-05-06	Scotland/EDB4579/2020|20-05-06
+node_306	Scotland/EDB4579/2020|20-05-06
+England/NOTT-10E1B3/2020|20-03-19	Scotland/EDB4579/2020|20-05-06
+Wales/PHWC-360E3/2020|20-04-26	Wales/PHWC-360E3/2020|20-04-26
+England/NOTT-10E1B3/2020|20-03-19	Wales/PHWC-360E3/2020|20-04-26
+IND/nimh-19510/2020|MW181843.1|20-05-16	Wales/PHWC-360E3/2020|20-04-26
+USA/CA-QDX-2630/2020|MW191335.1|20-03-15	USA/CA-QDX-2630/2020|MW191335.1|20-03-15
+node_342	USA/CA-QDX-2630/2020|MW191335.1|20-03-15
+Netherlands/NA_289/2020|LR878031.1|20-03-31	Netherlands/NA_289/2020|LR878031.1|20-03-31
+England/NOTT-10E1B3/2020|20-03-19	Netherlands/NA_289/2020|LR878031.1|20-03-31
+IND/nimh-19510/2020|MW181843.1|20-05-16	Netherlands/NA_289/2020|LR878031.1|20-03-31
+France/10065EE/2020|MT470176.1|20-03	France/10065EE/2020|MT470176.1|20-03
+England/NOTT-10E1B3/2020|20-03-19	France/10065EE/2020|MT470176.1|20-03
+IND/nimh-19510/2020|MW181843.1|20-05-16	France/10065EE/2020|MT470176.1|20-03
+France/10036BG/2020|MT470106.1|20-03	France/10036BG/2020|MT470106.1|20-03
+node_345	France/10036BG/2020|MT470106.1|20-03
+IHUCOVID-0033|LR794417.1|?	IHUCOVID-0033|LR794417.1|?
+node_345	IHUCOVID-0033|LR794417.1|?
+England/PORT-2D0D4C/2020|20-04-27	England/PORT-2D0D4C/2020|20-04-27
+England/NOTT-10E1B3/2020|20-03-19	England/PORT-2D0D4C/2020|20-04-27
+IND/nimh-19510/2020|MW181843.1|20-05-16	England/PORT-2D0D4C/2020|20-04-27
+Switzerland/100210/2020|LR884314.1|20-03-18	Switzerland/100210/2020|LR884314.1|20-03-18
+node_346	Switzerland/100210/2020|LR884314.1|20-03-18
+POL/PL_MCB_72/2020|MW273854.1|20-05-10	POL/PL_MCB_72/2020|MW273854.1|20-05-10
+England/NOTT-10E1B3/2020|20-03-19	POL/PL_MCB_72/2020|MW273854.1|20-05-10
+IND/nimh-19510/2020|MW181843.1|20-05-16	POL/PL_MCB_72/2020|MW273854.1|20-05-10
+POL/PL_MCB_97/2020|MW273879.1|20-05-10	POL/PL_MCB_97/2020|MW273879.1|20-05-10
+node_347	POL/PL_MCB_97/2020|MW273879.1|20-05-10
+England/QEUH-9CE80D/2020|20-09-17	England/QEUH-9CE80D/2020|20-09-17
+node_349	England/QEUH-9CE80D/2020|20-09-17
+England/QEUH-990752/2020|20-08-29	England/QEUH-990752/2020|20-08-29
+node_349	England/QEUH-990752/2020|20-08-29
+AUS/VIC38/2020|MT450953.1|20-03-11	AUS/VIC38/2020|MT450953.1|20-03-11
+node_350	AUS/VIC38/2020|MT450953.1|20-03-11
+IHUCOVID-0133|LR794459.1|?	IHUCOVID-0133|LR794459.1|?
+node_350	IHUCOVID-0133|LR794459.1|?
+USA/MN67-MDH67/2020|MT911566.1|20-03-14	USA/MN67-MDH67/2020|MT911566.1|20-03-14
+node_355	USA/MN67-MDH67/2020|MT911566.1|20-03-14
+Netherlands/NA_292/2020|LR878032.1|20-04-01	Netherlands/NA_292/2020|LR878032.1|20-04-01
+node_355	Netherlands/NA_292/2020|LR878032.1|20-04-01
+Switzerland/101166/2020|LR824397.1|20-03-31	Switzerland/101166/2020|LR824397.1|20-03-31
+node_356	Switzerland/101166/2020|LR824397.1|20-03-31
+Switzerland/100154/2020|LR824311.1|20-03-16	Switzerland/100154/2020|LR824311.1|20-03-16
+node_356	Switzerland/100154/2020|LR824311.1|20-03-16
+PER/covper020/2020|MW030251.1|20-07-03	PER/covper020/2020|MW030251.1|20-07-03
+node_357	PER/covper020/2020|MW030251.1|20-07-03
+PER/covper091/2020|MW030227.1|20-03-17	PER/covper091/2020|MW030227.1|20-03-17
+node_357	PER/covper091/2020|MW030227.1|20-03-17
+England/ALDP-49A5AE/2020|20-06-13	England/ALDP-49A5AE/2020|20-06-13
+node_31	England/ALDP-49A5AE/2020|20-06-13
+node_395	England/ALDP-49A5AE/2020|20-06-13
+England/ALDP-4A2A77/2020|20-05-22	England/ALDP-4A2A77/2020|20-05-22
+node_395	England/ALDP-4A2A77/2020|20-05-22
+Wales/PHWC-16930B/2020|20-04-01	Wales/PHWC-16930B/2020|20-04-01
+node_399	Wales/PHWC-16930B/2020|20-04-01
+Wales/PHWC-34285/2020|20-04-14	Wales/PHWC-34285/2020|20-04-14
+node_399	Wales/PHWC-34285/2020|20-04-14
+USA/UT-08320/2020|MW206019.1|20-05-15	USA/UT-08320/2020|MW206019.1|20-05-15
+node_400	USA/UT-08320/2020|MW206019.1|20-05-15
+USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14	USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14
+node_400	USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14
+England/QEUH-B2DD0B/2020|20-11-03	England/QEUH-B2DD0B/2020|20-11-03
+node_406	England/QEUH-B2DD0B/2020|20-11-03
+node_272	England/QEUH-B2DD0B/2020|20-11-03
+England/MILK-A7B0BB/2020|20-10-14	England/MILK-A7B0BB/2020|20-10-14
+node_406	England/MILK-A7B0BB/2020|20-10-14
+AUS/VIC989/2020|MT451674.1|20-03-31	AUS/VIC989/2020|MT451674.1|20-03-31
+node_408	AUS/VIC989/2020|MT451674.1|20-03-31
+AUS/VIC1056/2020|MT451723.1|20-04-03	AUS/VIC1056/2020|MT451723.1|20-04-03
+node_408	AUS/VIC1056/2020|MT451723.1|20-04-03
+England/BRIS-12B2BD/2020|20-05-02	England/BRIS-12B2BD/2020|20-05-02
+node_411	England/BRIS-12B2BD/2020|20-05-02
+England/BRIS-128DCE/2020|20-04-14	England/BRIS-128DCE/2020|20-04-14
+node_411	England/BRIS-128DCE/2020|20-04-14
+Scotland/GCVR-1725BE/2020|20-04-04	Scotland/GCVR-1725BE/2020|20-04-04
+node_414	Scotland/GCVR-1725BE/2020|20-04-04
+Scotland/CVR30/2020|20-03-13	Scotland/CVR30/2020|20-03-13
+node_414	Scotland/CVR30/2020|20-03-13
+England/NORT-289814/2020|20-04-01	England/NORT-289814/2020|20-04-01
+node_420	England/NORT-289814/2020|20-04-01
+England/ALDP-9ED57A/2020|20-05-08	England/ALDP-9ED57A/2020|20-05-08
+node_420	England/ALDP-9ED57A/2020|20-05-08
+USA/MA_MGH_00165/2020|MT520528.1|20-03-26	USA/MA_MGH_00165/2020|MT520528.1|20-03-26
+node_422	USA/MA_MGH_00165/2020|MT520528.1|20-03-26
+USA/MA_MGH_00711/2020|MT520198.1|20-04-08	USA/MA_MGH_00711/2020|MT520198.1|20-04-08
+node_422	USA/MA_MGH_00711/2020|MT520198.1|20-04-08
+Scotland/CVR129/2020|20-03-13	Scotland/CVR129/2020|20-03-13
+node_423	Scotland/CVR129/2020|20-03-13
+Scotland/CVR52/2020|20-03-14	Scotland/CVR52/2020|20-03-14
+node_423	Scotland/CVR52/2020|20-03-14
+GRC/208_33922/2020|MT459876.1|20-03-14	GRC/208_33922/2020|MT459876.1|20-03-14
+node_428	GRC/208_33922/2020|MT459876.1|20-03-14
+England/CAMC-947875/2020|20-07-13	England/CAMC-947875/2020|20-07-13
+node_427	England/CAMC-947875/2020|20-07-13
+GHA/34927_S20/2020|MT890226.1|20-05-23	GHA/34927_S20/2020|MT890226.1|20-05-23
+node_693	GHA/34927_S20/2020|MT890226.1|20-05-23
+GHA/35563_S37/2020|MT890230.1|20-05-24	GHA/35563_S37/2020|MT890230.1|20-05-24
+node_689	GHA/35563_S37/2020|MT890230.1|20-05-24
+node_690	GHA/35563_S37/2020|MT890230.1|20-05-24
+England/CAMC-C91F38/2020|20-12-11	England/CAMC-C91F38/2020|20-12-11
+node_696	England/CAMC-C91F38/2020|20-12-11
+SLE/KGH-G-8626/2020|MT872492.1|20-04-10	SLE/KGH-G-8626/2020|MT872492.1|20-04-10
+node_696	SLE/KGH-G-8626/2020|MT872492.1|20-04-10
+Scotland/EDB2100/2020|20-04-19	Scotland/EDB2100/2020|20-04-19
+node_36	Scotland/EDB2100/2020|20-04-19
+England/CAMB-1AC7D3/2020|20-04-22	England/CAMB-1AC7D3/2020|20-04-22
+node_35	England/CAMB-1AC7D3/2020|20-04-22
+Scotland/CVR2381/2020|20-04-13	Scotland/CVR2381/2020|20-04-13
+node_38	Scotland/CVR2381/2020|20-04-13
+Scotland/CVR2197/2020|20-04-11	Scotland/CVR2197/2020|20-04-11
+node_38	Scotland/CVR2197/2020|20-04-11
+England/NORW-E8C37/2020|20-04-13	England/NORW-E8C37/2020|20-04-13
+node_42	England/NORW-E8C37/2020|20-04-13
+England/NORW-E75A6/2020|20-05-04	England/NORW-E8C37/2020|20-04-13
+England/NORW-E75A6/2020|20-05-04	England/NORW-E75A6/2020|20-05-04
+node_42	England/NORW-E75A6/2020|20-05-04
+Wales/PHWC-3122E/2020|20-04-10	Wales/PHWC-3122E/2020|20-04-10
+node_43	Wales/PHWC-3122E/2020|20-04-10
+Wales/PHWC-1645EC/2020|20-05-10	Wales/PHWC-1645EC/2020|20-05-10
+node_43	Wales/PHWC-1645EC/2020|20-05-10
+England/ALDP-9ED9F6/2020|20-05-05	England/ALDP-9ED9F6/2020|20-05-05
+node_46	England/ALDP-9ED9F6/2020|20-05-05
+England/ALDP-944BD9/2020|20-06-07	England/ALDP-944BD9/2020|20-06-07
+node_46	England/ALDP-944BD9/2020|20-06-07
+England/LEED-2A91D7/2020|20-04-06	England/LEED-2A91D7/2020|20-04-06
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	England/LEED-2A91D7/2020|20-04-06
+node_67	England/LEED-2A91D7/2020|20-04-06
+England/LEED-2A87C7/2020|20-04-03	England/LEED-2A87C7/2020|20-04-03
+node_60	England/LEED-2A87C7/2020|20-04-03
+USA/WA-UW-4105/2020|MT358746.1|20-03-31	USA/WA-UW-4105/2020|MT358746.1|20-03-31
+node_64	USA/WA-UW-4105/2020|MT358746.1|20-03-31
+USA/WA-UW-2220/2020|MT345839.1|20-03-23	USA/WA-UW-2220/2020|MT345839.1|20-03-23
+node_64	USA/WA-UW-2220/2020|MT345839.1|20-03-23
+USA/FL-BPHL-1565/2020|MW056116.1|20-09-10	USA/FL-BPHL-1565/2020|MW056116.1|20-09-10
+node_65	USA/FL-BPHL-1565/2020|MW056116.1|20-09-10
+USA/FL-BPHL-0510/2020|MT834668.1|20-06-10	USA/FL-BPHL-0510/2020|MT834668.1|20-06-10
+node_65	USA/FL-BPHL-0510/2020|MT834668.1|20-06-10
+USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29	USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29
+node_66	USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29
+USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29	USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29
+node_66	USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29
+USA/CA-CZB-11119/2020|MW276517.1|20-05-29	USA/CA-CZB-11119/2020|MW276517.1|20-05-29
+node_69	USA/CA-CZB-11119/2020|MW276517.1|20-05-29
+USA/CA-CZB-11132/2020|MW276510.1|20-05-23	USA/CA-CZB-11132/2020|MW276510.1|20-05-23
+node_69	USA/CA-CZB-11132/2020|MW276510.1|20-05-23
+Wales/PHWC-1658A6/2020|20-05-19	Wales/PHWC-1658A6/2020|20-05-19
+node_79	Wales/PHWC-1658A6/2020|20-05-19
+Wales/PHWC-2E0A2/2020|20-04-10	Wales/PHWC-2E0A2/2020|20-04-10
+node_79	Wales/PHWC-2E0A2/2020|20-04-10
+Scotland/EDB3137/2020|20-04-06	Scotland/EDB3137/2020|20-04-06
+node_81	Scotland/EDB3137/2020|20-04-06
+Scotland/EDB2810/2020|20-03-30	Scotland/EDB2810/2020|20-03-30
+node_81	Scotland/EDB2810/2020|20-03-30
+USA/FL-BPHL-1680/2020|MW166145.1|20-08-11	USA/FL-BPHL-1680/2020|MW166145.1|20-08-11
+node_105	USA/FL-BPHL-1680/2020|MW166145.1|20-08-11
+USA/FL-BPHL-1350/2020|MW023549.1|20-07-15	USA/FL-BPHL-1350/2020|MW023549.1|20-07-15
+node_105	USA/FL-BPHL-1350/2020|MW023549.1|20-07-15
+USA/CA-CZB-1517/2020|MT628191.1|20-05-13	USA/CA-CZB-1517/2020|MT628191.1|20-05-13
+node_107	USA/CA-CZB-1517/2020|MT628191.1|20-05-13
+USA/CA-CZB-1793/2020|MT750334.1|20-04-16	USA/CA-CZB-1793/2020|MT750334.1|20-04-16
+node_107	USA/CA-CZB-1793/2020|MT750334.1|20-04-16
+USA/WA-UW-2108/2020|MT345811.1|20-03-24	USA/WA-UW-2108/2020|MT345811.1|20-03-24
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/WA-UW-2108/2020|MT345811.1|20-03-24
+node_67	USA/WA-UW-2108/2020|MT345811.1|20-03-24
+England/LIVE-DAB556/2020|20-10-18	USA/WA-UW-2108/2020|MT345811.1|20-03-24
+USA/CA-QDX-434/2020|MW064457.1|20-03-20	USA/WA-UW-2108/2020|MT345811.1|20-03-24
+USA/WA-S2725/2020|MT947550.1|20-07-07	USA/WA-UW-2108/2020|MT345811.1|20-03-24
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+USA/TX-DSHS-1232/2020|MW309089.1|20-03-25	USA/TX-DSHS-1232/2020|MW309089.1|20-03-25
+node_124	USA/TX-DSHS-1232/2020|MW309089.1|20-03-25
+USA/WA-QDX-235/2020|MT806806.1|20-04-27	USA/WA-QDX-235/2020|MT806806.1|20-04-27
+node_126	USA/WA-QDX-235/2020|MT806806.1|20-04-27
+USA/WA-S1266/2020|MT821676.1|20-05-13	USA/WA-S1266/2020|MT821676.1|20-05-13
+USA/FL-BPHL-1565/2020|MW056116.1|20-09-10	USA/WA-S1266/2020|MT821676.1|20-05-13
+USA/WA-UW-2108/2020|MT345811.1|20-03-24	USA/WA-S1266/2020|MT821676.1|20-05-13
+USA/UT-QDX-2224/2020|MW191025.1|20-03-13	USA/UT-QDX-2224/2020|MW191025.1|20-03-13
+node_128	USA/UT-QDX-2224/2020|MW191025.1|20-03-13
+USA/TX-DSHS-0313/2020|MW115058.1|20-06-13	USA/TX-DSHS-0313/2020|MW115058.1|20-06-13
+node_128	USA/TX-DSHS-0313/2020|MW115058.1|20-06-13
+USA/FL-QDX-1620/2020|MW190373.1|20-03-16	USA/FL-QDX-1620/2020|MW190373.1|20-03-16
+node_129	USA/FL-QDX-1620/2020|MW190373.1|20-03-16
+USA/FL-BPHL-0109/2020|MT872200.1|20-04-30	USA/FL-BPHL-0109/2020|MT872200.1|20-04-30
+node_129	USA/FL-BPHL-0109/2020|MT872200.1|20-04-30
+USA/TX-DSHS-0780/2020|MW147526.1|20-05-21	USA/TX-DSHS-0780/2020|MW147526.1|20-05-21
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+USA/MN-MDH-1557/2020|MT958254.1|20-08-03	USA/MN-MDH-1557/2020|MT958254.1|20-08-03
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+USA/CA-CZB0731/2020|MT385450.1|20-03-31	USA/CA-CZB0731/2020|MT385450.1|20-03-31
+node_142	USA/CA-CZB0731/2020|MT385450.1|20-03-31
+USA/MA_MGH_00458/2020|MT520347.1|20-04-04	USA/MA_MGH_00458/2020|MT520347.1|20-04-04
+node_146	USA/MA_MGH_00458/2020|MT520347.1|20-04-04
+USA/MA_MGH_00445/2020|MT520273.1|20-04-01	USA/MA_MGH_00445/2020|MT520273.1|20-04-01
+node_146	USA/MA_MGH_00445/2020|MT520273.1|20-04-01
+USA/MN-MDH-1464/2020|MT919997.1|20-03-24	USA/MN-MDH-1464/2020|MT919997.1|20-03-24
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+USA/WA-UW-2008/2020|MT326031.1|20-03-24	USA/WA-UW-2008/2020|MT326031.1|20-03-24
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+USA/WA-UW-3832/2020|MT358685.1|20-03-26	USA/WA-UW-3832/2020|MT358685.1|20-03-26
+node_153	USA/WA-UW-3832/2020|MT358685.1|20-03-26
+USA/MI-QDX-371/2020|MW064412.1|20-03-23	USA/MI-QDX-371/2020|MW064412.1|20-03-23
+node_154	USA/MI-QDX-371/2020|MW064412.1|20-03-23
+USA/MI-QDX-298/2020|MW064340.1|20-03-21	USA/MI-QDX-298/2020|MW064340.1|20-03-21
+node_154	USA/MI-QDX-298/2020|MW064340.1|20-03-21
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+USA/UT-03817/2020|MT873871.1|20-04-03	USA/UT-03817/2020|MT873871.1|20-04-03
+node_161	USA/UT-03817/2020|MT873871.1|20-04-03
+USA/MN-MDH-1643/2020|MW020074.1|20-06-08	USA/MN-MDH-1643/2020|MW020074.1|20-06-08
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+USA/MN-MDH-1610/2020|MT997728.1|20-04-28	USA/MN-MDH-1610/2020|MT997728.1|20-04-28
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+USA/CA-QDX-2335/2020|MW191073.1|20-03-17	USA/CA-QDX-2335/2020|MW191073.1|20-03-17
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+node_164	USA/MI-QDX-595/2020|MW064630.1|20-03-18
+USA/CA-CZB-2223/2020|MW035933.1|20-05-31	USA/CA-CZB-2223/2020|MW035933.1|20-05-31
+USA/WA-UW-2108/2020|MT345811.1|20-03-24	USA/CA-CZB-2223/2020|MW035933.1|20-05-31
+node_119	USA/CA-CZB-2223/2020|MW035933.1|20-05-31
+USA/CA-CZB-4063/2020|MW134429.1|20-08-04	USA/CA-CZB-4063/2020|MW134429.1|20-08-04
+node_167	USA/CA-CZB-4063/2020|MW134429.1|20-08-04
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+England/BRIS-129D72/2020|20-04-15	England/BRIS-129D72/2020|20-04-15
+node_168	England/BRIS-129D72/2020|20-04-15
+USA/MN-MDH-1616/2020|MT997734.1|20-04-24	USA/MN-MDH-1616/2020|MT997734.1|20-04-24
+node_169	USA/MN-MDH-1616/2020|MT997734.1|20-04-24
+USA/MN-CDC-6364/2020|MT967959.1|20-05-21	USA/MN-CDC-6364/2020|MT967959.1|20-05-21
+node_169	USA/MN-CDC-6364/2020|MT967959.1|20-05-21
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+node_172	USA/CA-QDX-2032/2020|MW190749.1|20-03-17
+USA/CA-QDX-2576/2020|MW191310.1|20-03-16	USA/CA-QDX-2576/2020|MW191310.1|20-03-16
+node_172	USA/CA-QDX-2576/2020|MW191310.1|20-03-16
+USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09	USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09
+node_174	USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09
+USA/CT-UW-4372/2020|MT345874.1|20-03-30	USA/CT-UW-4372/2020|MT345874.1|20-03-30
+USA/WA-UW-2108/2020|MT345811.1|20-03-24	USA/CT-UW-4372/2020|MT345874.1|20-03-30
+USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09	USA/CT-UW-4372/2020|MT345874.1|20-03-30
+England/BRIS-12BF3E/2020|20-05-09	England/BRIS-12BF3E/2020|20-05-09
+USA/WA-UW-2108/2020|MT345811.1|20-03-24	England/BRIS-12BF3E/2020|20-05-09
+node_132	England/BRIS-12BF3E/2020|20-05-09
+England/BRIS-12DF1E/2020|20-06-04	England/BRIS-12DF1E/2020|20-06-04
+node_175	England/BRIS-12DF1E/2020|20-06-04
+USA/CA-CZB-3630/2020|MW134171.1|20-07-23	USA/CA-CZB-3630/2020|MW134171.1|20-07-23
+node_176	USA/CA-CZB-3630/2020|MW134171.1|20-07-23
+USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26	USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26
+node_176	USA/SEARCH-1595-SAN/2020|MT810882.1|20-04-26
+Northern_Ireland/NIRE-1021DD/2020|20-03-14	Northern_Ireland/NIRE-1021DD/2020|20-03-14
+node_181	Northern_Ireland/NIRE-1021DD/2020|20-03-14
+USA/CA-CZB-2429/2020|MW036038.1|20-05-21	USA/CA-CZB-2429/2020|MW036038.1|20-05-21
+node_181	USA/CA-CZB-2429/2020|MW036038.1|20-05-21
+England/PHEC-15A73/2020|20-03-29	England/PHEC-15A73/2020|20-03-29
+node_185	England/PHEC-15A73/2020|20-03-29
+USA/CA-QDX-796/2020|MW064788.1|20-03-23	USA/CA-QDX-796/2020|MW064788.1|20-03-23
+node_185	USA/CA-QDX-796/2020|MW064788.1|20-03-23
+B90|LR898037.1|?	B90|LR898037.1|?
+node_186	B90|LR898037.1|?
+O9|LR963074.1|?	O9|LR963074.1|?
+node_186	O9|LR963074.1|?
+USA/TX-DSHS-1331/2020|MW322992.1|20-04-01	USA/TX-DSHS-1331/2020|MW322992.1|20-04-01
+node_187	USA/TX-DSHS-1331/2020|MW322992.1|20-04-01
+USA/WI-UW-738/2020|MT772509.1|20-06-30	USA/WI-UW-738/2020|MT772509.1|20-06-30
+node_187	USA/WI-UW-738/2020|MT772509.1|20-06-30
+USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07	USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07
+node_189	USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07
+USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18	USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18
+node_189	USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18
+ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09	ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09
+node_190	ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09
+England/CAMC-946515/2020|20-07-15	England/CAMC-946515/2020|20-07-15
+node_190	England/CAMC-946515/2020|20-07-15
+USA/WI-UW-249/2020|MT706376.1|20-03-16	USA/WI-UW-249/2020|MT706376.1|20-03-16
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/WI-UW-249/2020|MT706376.1|20-03-16
+node_67	USA/WI-UW-249/2020|MT706376.1|20-03-16
+USA/WI-UW-84/2020|MT706205.1|20-03-24	USA/WI-UW-84/2020|MT706205.1|20-03-24
+node_67	USA/WI-UW-84/2020|MT706205.1|20-03-24
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/WI-UW-84/2020|MT706205.1|20-03-24
+USA/VA-DCLS-0593/2020|MT951960.1|20-03	USA/VA-DCLS-0593/2020|MT951960.1|20-03
+node_182	USA/VA-DCLS-0593/2020|MT951960.1|20-03
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/VA-DCLS-0593/2020|MT951960.1|20-03
+node_67	USA/VA-DCLS-0593/2020|MT951960.1|20-03
+USA/TX-CDC-3009/2020|MT512440.1|20-03-10	USA/TX-CDC-3009/2020|MT512440.1|20-03-10
+node_200	USA/TX-CDC-3009/2020|MT512440.1|20-03-10
+USA/FL-BPHL-1673/2020|MW166138.1|20-07-06	USA/FL-BPHL-1673/2020|MW166138.1|20-07-06
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/FL-BPHL-1673/2020|MW166138.1|20-07-06
+node_67	USA/FL-BPHL-1673/2020|MW166138.1|20-07-06
+USA/MD-MDH-0286/2020|MW240750.1|20-10-13	USA/MD-MDH-0286/2020|MW240750.1|20-10-13
+node_67	USA/MD-MDH-0286/2020|MW240750.1|20-10-13
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/MD-MDH-0286/2020|MW240750.1|20-10-13
+USA/UT-04888/2020|MW084559.1|20-05-26	USA/UT-04888/2020|MW084559.1|20-05-26
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/UT-04888/2020|MW084559.1|20-05-26
+node_53	USA/UT-04888/2020|MW084559.1|20-05-26
+node_67	USA/UT-04888/2020|MW084559.1|20-05-26
+USA/UT-04282/2020|MW084509.1|20-05-14	USA/UT-04282/2020|MW084509.1|20-05-14
+node_53	USA/UT-04282/2020|MW084509.1|20-05-14
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/UT-04282/2020|MW084509.1|20-05-14
+node_67	USA/UT-04282/2020|MW084509.1|20-05-14
+USA/MA_MGH_00136/2020|MT520439.1|20-03-25	USA/MA_MGH_00136/2020|MT520439.1|20-03-25
+node_204	USA/MA_MGH_00136/2020|MT520439.1|20-03-25
+USA/MA_MGH_00486/2020|MT520279.1|20-03-27	USA/MA_MGH_00486/2020|MT520279.1|20-03-27
+node_204	USA/MA_MGH_00486/2020|MT520279.1|20-03-27
+Wales/PHWC-15DFD9/2020|20-05-14	Wales/PHWC-15DFD9/2020|20-05-14
+node_205	Wales/PHWC-15DFD9/2020|20-05-14
+Wales/PHWC-2AF12/2020|20-04-06	Wales/PHWC-2AF12/2020|20-04-06
+node_67	Wales/PHWC-2AF12/2020|20-04-06
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	Wales/PHWC-2AF12/2020|20-04-06
+IHUCOVID-0441|LR794655.1|?	IHUCOVID-0441|LR794655.1|?
+node_208	IHUCOVID-0441|LR794655.1|?
+IHUCOVID-0428|LR794641.1|?	IHUCOVID-0428|LR794641.1|?
+node_208	IHUCOVID-0428|LR794641.1|?
+hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?	hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?
+node_210	hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|?
+Switzerland/100363/2020|LR884411.1|20-03-20	Switzerland/100363/2020|LR884411.1|20-03-20
+node_210	Switzerland/100363/2020|LR884411.1|20-03-20
+USA/UT-01683/2020|MT536956.1|20-04-13	USA/UT-01683/2020|MT536956.1|20-04-13
+node_251	USA/UT-01683/2020|MT536956.1|20-04-13
+USA/UT-03892/2020|MT711875.1|20-04-13	USA/UT-03892/2020|MT711875.1|20-04-13
+node_251	USA/UT-03892/2020|MT711875.1|20-04-13
+USA/CA-CZB-1414/2020|MT628125.1|20-03-16	USA/CA-CZB-1414/2020|MT628125.1|20-03-16
+node_67	USA/CA-CZB-1414/2020|MT628125.1|20-03-16
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/CA-CZB-1414/2020|MT628125.1|20-03-16
+USA/WI-UW-413/2020|MT772562.1|20-04-07	USA/CA-CZB-1414/2020|MT628125.1|20-03-16
+USA/CA-CZB-11962/2020|MW276532.1|20-06-17	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+node_53	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+node_67	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+node_413	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+node_157	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+USA/WI-UW-413/2020|MT772562.1|20-04-07	USA/CA-CZB-11962/2020|MW276532.1|20-06-17
+England/NORW-E7EBA/2020|20-05-06	England/NORW-E7EBA/2020|20-05-06
+node_255	England/NORW-E7EBA/2020|20-05-06
+USA/CA-QDX-1044/2020|MW065007.1|20-03-17	USA/CA-QDX-1044/2020|MW065007.1|20-03-17
+node_255	USA/CA-QDX-1044/2020|MW065007.1|20-03-17
+USA/WI-UW-413/2020|MT772562.1|20-04-07	USA/WI-UW-413/2020|MT772562.1|20-04-07
+node_256	USA/WI-UW-413/2020|MT772562.1|20-04-07
+USA/WI-UW-288/2020|MT706396.1|20-04-08	USA/WI-UW-288/2020|MT706396.1|20-04-08
+node_256	USA/WI-UW-288/2020|MT706396.1|20-04-08
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+node_259	USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05
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+node_67	USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26
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+USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19	USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19
+node_266	USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19
+USA/TX-QDX-3305/2020|MW522496.1|20-07-23	USA/TX-QDX-3305/2020|MW522496.1|20-07-23
+node_266	USA/TX-QDX-3305/2020|MW522496.1|20-07-23
+BHR/740704818/2021|MW661071.1|21-01-26	BHR/740704818/2021|MW661071.1|21-01-26
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+node_278	Scotland/EDB6880/2020|20-04-30
+USA/CA-CDC-4728/2020|MW001919.1|20-06-16	USA/CA-CDC-4728/2020|MW001919.1|20-06-16
+node_277	USA/CA-CDC-4728/2020|MW001919.1|20-06-16
+node_305	USA/CA-CDC-4728/2020|MW001919.1|20-06-16
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+node_305	England/ALDP-B252AA/2020|20-11-04
+USA/CA-CZB-11549/2020|MW276537.1|20-07-12	USA/CA-CZB-11549/2020|MW276537.1|20-07-12
+node_277	USA/CA-CZB-11549/2020|MW276537.1|20-07-12
+node_305	USA/CA-CZB-11549/2020|MW276537.1|20-07-12
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+node_277	USA/CA-CZB-11793/2020|MW276612.1|20-09-22
+Scotland/CVR3238/2020|20-04-26	USA/CA-CZB-11793/2020|MW276612.1|20-09-22
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+node_277	USA/CA-CZB-2502/2020|MW035993.1|20-05-25
+node_305	USA/CA-CZB-2502/2020|MW035993.1|20-05-25
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+node_277	USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28
+node_305	USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28
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+node_277	USA/MD-MDH-0227/2020|MW157244.1|20-09-23
+node_305	USA/MD-MDH-0227/2020|MW157244.1|20-09-23
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+node_277	England/LOND-D5444/2020|20-04-15
+node_305	England/LOND-D5444/2020|20-04-15
+Scotland/CVR3238/2020|20-04-26	Scotland/CVR3238/2020|20-04-26
+node_277	Scotland/CVR3238/2020|20-04-26
+USA/CA-CZB-11793/2020|MW276612.1|20-09-22	Scotland/CVR3238/2020|20-04-26
+node_305	Scotland/CVR3238/2020|20-04-26
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+node_305	USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18
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+node_277	USA/CA-CZB-3893/2020|MW134296.1|20-07-21
+node_305	USA/CA-CZB-3893/2020|MW134296.1|20-07-21
+Scotland/EDB3662/2020|20-04-28	Scotland/EDB3662/2020|20-04-28
+node_277	Scotland/EDB3662/2020|20-04-28
+node_305	Scotland/EDB3662/2020|20-04-28
+England/ALDP-6FB8FB/2020|20-06-29	England/ALDP-6FB8FB/2020|20-06-29
+node_277	England/ALDP-6FB8FB/2020|20-06-29
+node_305	England/ALDP-6FB8FB/2020|20-06-29
+USA/CA-CDC-4704/2020|MW001903.1|20-06-04	USA/CA-CDC-4704/2020|MW001903.1|20-06-04
+node_277	USA/CA-CDC-4704/2020|MW001903.1|20-06-04
+node_305	USA/CA-CDC-4704/2020|MW001903.1|20-06-04
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+node_277	USA/CA-CZB-4000/2020|MW134394.1|20-07-29
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+node_277	England/QEUH-544733/2020|20-05-14
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+node_297	USA/TX-DSHS-0945/2020|MW190134.1|20-07-03
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+node_277	England/CAMC-B325A1/2020|20-11-05
+node_305	England/CAMC-B325A1/2020|20-11-05
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+node_306	England/PHEC-224A2/2020|20-06-08
+England/NORW-ECD21/2020|20-05-29	England/NORW-ECD21/2020|20-05-29
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+node_311	England/NORW-E755B/2020|20-05-04
+IND/nimh-19510/2020|MW181843.1|20-05-16	IND/nimh-19510/2020|MW181843.1|20-05-16
+node_344	IND/nimh-19510/2020|MW181843.1|20-05-16
+IND/GBRC174b/2020|MT607610.1|20-06-05	IND/GBRC174b/2020|MT607610.1|20-06-05
+node_344	IND/GBRC174b/2020|MT607610.1|20-06-05
+Scotland/CVR3629/2020|20-05-24	Scotland/CVR3629/2020|20-05-24
+node_348	Scotland/CVR3629/2020|20-05-24
+Scotland/QEUH-5456F9/2020|20-05-13	Scotland/QEUH-5456F9/2020|20-05-13
+node_348	Scotland/QEUH-5456F9/2020|20-05-13
+Switzerland/240009/2020|LR880588.1|20-08-07	Switzerland/240009/2020|LR880588.1|20-08-07
+node_353	Switzerland/240009/2020|LR880588.1|20-08-07
+Switzerland/240084/2020|LR880634.1|20-08-12	Switzerland/240084/2020|LR880634.1|20-08-12
+node_353	Switzerland/240084/2020|LR880634.1|20-08-12
+England/LIVE-A65EF/2020|20-03-19	England/LIVE-A65EF/2020|20-03-19
+node_412	England/LIVE-A65EF/2020|20-03-19
+Wales/PHWC-2B7CE/2020|20-04-12	Wales/PHWC-2B7CE/2020|20-04-12
+Scotland/CVR2927/2020|20-04-22	Wales/PHWC-2B7CE/2020|20-04-12
+England/NOTT-10E1B3/2020|20-03-19	Wales/PHWC-2B7CE/2020|20-04-12
+England/ALDP-94D8D9/2020|20-06-20	England/ALDP-94D8D9/2020|20-06-20
+node_424	England/ALDP-94D8D9/2020|20-06-20
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+node_424	England/ALDP-9442D4/2020|20-06-07
+England/PORT-2D3B4F/2020|20-04-18	England/PORT-2D3B4F/2020|20-04-18
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+England/EXET-136EE8/2020|20-04-20	England/EXET-136EE8/2020|20-04-20
+node_429	England/EXET-136EE8/2020|20-04-20
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+node_427	England/PHEC-215FB/2020|20-04-29
+Switzerland/120182/2020|LR860799.1|20-04-27	England/PHEC-215FB/2020|20-04-29
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+Switzerland/120182/2020|LR860799.1|20-04-27	Switzerland/120182/2020|LR860799.1|20-04-27
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+node_482	Scotland/EDB300/2020|20-03-29
+node_654	Scotland/EDB300/2020|20-03-29
+England/CAMB-7620F/2020|20-03-30	Scotland/EDB300/2020|20-03-29
+England/BRIS-124C89/2020|20-03-26	Scotland/EDB300/2020|20-03-29
+Scotland/CVR3194/2020|20-04-28	Scotland/CVR3194/2020|20-04-28
+Switzerland/120182/2020|LR860799.1|20-04-27	Scotland/CVR3194/2020|20-04-28
+England/SHEF-C9FBB/2020|20-04-11	Scotland/CVR3194/2020|20-04-28
+node_482	Scotland/CVR3194/2020|20-04-28
+England/CAMB-7620F/2020|20-03-30	Scotland/CVR3194/2020|20-04-28
+England/BRIS-124C89/2020|20-03-26	Scotland/CVR3194/2020|20-04-28
+England/BIRM-6529A/2020|20-09-30	England/BIRM-6529A/2020|20-09-30
+node_634	England/BIRM-6529A/2020|20-09-30
+USA/WA-S2831/2020|MW077478.1|20-09-08	USA/WA-S2831/2020|MW077478.1|20-09-08
+node_540	USA/WA-S2831/2020|MW077478.1|20-09-08
+Switzerland/120182/2020|LR860799.1|20-04-27	USA/WA-S2831/2020|MW077478.1|20-09-08
+England/SHEF-C9FBB/2020|20-04-11	USA/WA-S2831/2020|MW077478.1|20-09-08
+node_654	USA/WA-S2831/2020|MW077478.1|20-09-08
+node_482	USA/WA-S2831/2020|MW077478.1|20-09-08
+England/CAMB-7620F/2020|20-03-30	USA/WA-S2831/2020|MW077478.1|20-09-08
+node_427	USA/WA-S2831/2020|MW077478.1|20-09-08
+England/BRIS-124C89/2020|20-03-26	USA/WA-S2831/2020|MW077478.1|20-09-08
+IND/GBRC203a/2020|MT669321.1|20-06-07	IND/GBRC203a/2020|MT669321.1|20-06-07
+node_638	IND/GBRC203a/2020|MT669321.1|20-06-07
+USA/WA-S2809/2020|MW077484.1|20-08-31	USA/WA-S2809/2020|MW077484.1|20-08-31
+node_638	USA/WA-S2809/2020|MW077484.1|20-08-31
+England/CAMB-7C12A/2020|20-04-13	England/CAMB-7C12A/2020|20-04-13
+node_641	England/CAMB-7C12A/2020|20-04-13
+England/CAMB-83348/2020|20-04-15	England/CAMB-83348/2020|20-04-15
+node_641	England/CAMB-83348/2020|20-04-15
+England/CAMC-946506/2020|20-07-15	England/CAMC-946506/2020|20-07-15
+node_643	England/CAMC-946506/2020|20-07-15
+AUS/VIC2173/2020|MT972184.1|20-06-24	AUS/VIC2173/2020|MT972184.1|20-06-24
+node_427	AUS/VIC2173/2020|MT972184.1|20-06-24
+Switzerland/120182/2020|LR860799.1|20-04-27	AUS/VIC2173/2020|MT972184.1|20-06-24
+England/SHEF-C9FBB/2020|20-04-11	AUS/VIC2173/2020|MT972184.1|20-06-24
+node_482	AUS/VIC2173/2020|MT972184.1|20-06-24
+node_654	AUS/VIC2173/2020|MT972184.1|20-06-24
+England/CAMB-7620F/2020|20-03-30	AUS/VIC2173/2020|MT972184.1|20-06-24
+England/BRIS-124C89/2020|20-03-26	AUS/VIC2173/2020|MT972184.1|20-06-24
+England/SHEF-D1CE6/2020|20-04-28	England/SHEF-D1CE6/2020|20-04-28
+Switzerland/120182/2020|LR860799.1|20-04-27	England/SHEF-D1CE6/2020|20-04-28
+England/SHEF-C9FBB/2020|20-04-11	England/SHEF-D1CE6/2020|20-04-28
+node_482	England/SHEF-D1CE6/2020|20-04-28
+England/CAMB-7620F/2020|20-03-30	England/SHEF-D1CE6/2020|20-04-28
+England/BRIS-124C89/2020|20-03-26	England/SHEF-D1CE6/2020|20-04-28
+England/SHEF-C0F96/2020|20-04-15	England/SHEF-C0F96/2020|20-04-15
+node_537	England/SHEF-C0F96/2020|20-04-15
+Switzerland/120182/2020|LR860799.1|20-04-27	England/SHEF-C0F96/2020|20-04-15
+England/SHEF-C9FBB/2020|20-04-11	England/SHEF-C0F96/2020|20-04-15
+node_436	England/SHEF-C0F96/2020|20-04-15
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+England/CAMB-7620F/2020|20-03-30	England/SHEF-C0F96/2020|20-04-15
+England/BRIS-124C89/2020|20-03-26	England/SHEF-C0F96/2020|20-04-15
+Netherlands/NA_359/2020|LR883961.1|20-04-07	Netherlands/NA_359/2020|LR883961.1|20-04-07
+node_651	Netherlands/NA_359/2020|LR883961.1|20-04-07
+Netherlands/NA_589/2020|LR883868.1|20-04-05	Netherlands/NA_589/2020|LR883868.1|20-04-05
+node_427	Netherlands/NA_589/2020|LR883868.1|20-04-05
+Switzerland/120182/2020|LR860799.1|20-04-27	Netherlands/NA_589/2020|LR883868.1|20-04-05
+England/SHEF-C9FBB/2020|20-04-11	Netherlands/NA_589/2020|LR883868.1|20-04-05
+node_482	Netherlands/NA_589/2020|LR883868.1|20-04-05
+England/CAMB-7620F/2020|20-03-30	Netherlands/NA_589/2020|LR883868.1|20-04-05
+node_654	Netherlands/NA_589/2020|LR883868.1|20-04-05
+England/BRIS-124C89/2020|20-03-26	Netherlands/NA_589/2020|LR883868.1|20-04-05
+England/ALDP-BCA4B0/2020|20-11-23	England/ALDP-BCA4B0/2020|20-11-23
+node_653	England/ALDP-BCA4B0/2020|20-11-23
+England/ALDP-119985B/2021|21-01-27	England/ALDP-119985B/2021|21-01-27
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+USA/WI-UW-06/2020|MT772088.1|20-03-21	USA/WI-UW-06/2020|MT772088.1|20-03-21
+node_692	USA/WI-UW-06/2020|MT772088.1|20-03-21
+USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24	USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24
+node_689	USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24
+node_690	USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24
+USA/WA-S3017/2020|MW474188.1|20-08-15	USA/WA-S3017/2020|MW474188.1|20-08-15
+node_48	USA/WA-S3017/2020|MW474188.1|20-08-15
+USA/WA-S2852/2020|MW079820.1|20-09-01	USA/WA-S2852/2020|MW079820.1|20-09-01
+node_48	USA/WA-S2852/2020|MW079820.1|20-09-01
+CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18	CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18
+node_53	CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18
+node_67	CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18
+USA/WI-UW-269/2020|MT429191.1|20-04-06	USA/WI-UW-269/2020|MT429191.1|20-04-06
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	USA/WI-UW-269/2020|MT429191.1|20-04-06
+node_67	USA/WI-UW-269/2020|MT429191.1|20-04-06
+England/CAMB-7A7DF/2020|20-04-02	England/CAMB-7A7DF/2020|20-04-02
+node_67	England/CAMB-7A7DF/2020|20-04-02
+Netherlands/NA_18/2020|LR878352.1|20-03-09	Netherlands/NA_18/2020|LR878352.1|20-03-09
+node_53	Netherlands/NA_18/2020|LR878352.1|20-03-09
+node_67	Netherlands/NA_18/2020|LR878352.1|20-03-09
+USA/FL-BPHL-0401/2020|MT757087.1|20-05-14	Netherlands/NA_18/2020|LR878352.1|20-03-09
+USA/VA-DCLS-1557/2020|MW208010.1|20-08	USA/VA-DCLS-1557/2020|MW208010.1|20-08
+node_68	USA/VA-DCLS-1557/2020|MW208010.1|20-08
+USA/FL-BPHL-1018/2020|MT966219.1|20-07-17	USA/FL-BPHL-1018/2020|MT966219.1|20-07-17
+node_68	USA/FL-BPHL-1018/2020|MT966219.1|20-07-17
+USA/FL-BPHL-1022/2020|MT966234.1|20-07-20	USA/FL-BPHL-1022/2020|MT966234.1|20-07-20
+node_74	USA/FL-BPHL-1022/2020|MT966234.1|20-07-20
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+USA/UT-02231/2020|MT444626.1|20-04-15	USA/UT-02231/2020|MT444626.1|20-04-15
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+Switzerland/120182/2020|LR860799.1|20-04-27	Switzerland/230051/2020|LR882355.1|20-08-04
+England/SHEF-C9FBB/2020|20-04-11	Switzerland/230051/2020|LR882355.1|20-08-04
+node_482	Switzerland/230051/2020|LR882355.1|20-08-04
+England/CAMB-7620F/2020|20-03-30	Switzerland/230051/2020|LR882355.1|20-08-04
+England/BRIS-124C89/2020|20-03-26	Switzerland/230051/2020|LR882355.1|20-08-04
+Wales/MILK-9C729D/2020|20-09-12	Wales/MILK-9C729D/2020|20-09-12
+node_445	Wales/MILK-9C729D/2020|20-09-12
+England/BRIS-12A70A/2020|20-05-01	England/BRIS-12A70A/2020|20-05-01
+node_446	England/BRIS-12A70A/2020|20-05-01
+England/CAMB-77F61/2020|20-04-01	England/CAMB-77F61/2020|20-04-01
+node_446	England/CAMB-77F61/2020|20-04-01
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+node_453	PHL/UPMNIH_C1/2020|MW243995.1|20-07
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+PHL/COVID-6009/2020|MT919790.1|20-07-18	PHL/COVID-6009/2020|MT919790.1|20-07-18
+node_453	PHL/COVID-6009/2020|MT919790.1|20-07-18
+England/CAMC-94328A/2020|20-07-25	England/CAMC-94328A/2020|20-07-25
+node_456	England/CAMC-94328A/2020|20-07-25
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+node_456	England/CAMC-9424A3/2020|20-07-21
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+Switzerland/120182/2020|LR860799.1|20-04-27	Switzerland/250070/2020|LR881870.1|20-08-18
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+node_427	USA/FL-BPHL-0303/2020|MT757111.1|20-05-30
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+England/CAMB-76490/2020|20-03-30	England/CAMB-76490/2020|20-03-30
+node_535	England/CAMB-76490/2020|20-03-30
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+USA/WA-S2573/2020|MT831840.1|20-06-17	USA/WA-S2573/2020|MT831840.1|20-06-17
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+USA/WA-S2761/2020|MT947580.1|20-07-29	USA/WA-S2761/2020|MT947580.1|20-07-29
+Switzerland/120182/2020|LR860799.1|20-04-27	USA/WA-S2761/2020|MT947580.1|20-07-29
+node_427	USA/WA-S2761/2020|MT947580.1|20-07-29
+England/SHEF-C9FBB/2020|20-04-11	USA/WA-S2761/2020|MT947580.1|20-07-29
+node_482	USA/WA-S2761/2020|MT947580.1|20-07-29
+England/CAMB-7620F/2020|20-03-30	USA/WA-S2761/2020|MT947580.1|20-07-29
+node_654	USA/WA-S2761/2020|MT947580.1|20-07-29
+England/BRIS-124C89/2020|20-03-26	USA/WA-S2761/2020|MT947580.1|20-07-29
+England/QEUH-A9F5D0/2020|20-10-20	England/QEUH-A9F5D0/2020|20-10-20
+node_427	England/QEUH-A9F5D0/2020|20-10-20
+Switzerland/120182/2020|LR860799.1|20-04-27	England/QEUH-A9F5D0/2020|20-10-20
+node_654	England/QEUH-A9F5D0/2020|20-10-20
+England/SHEF-C9FBB/2020|20-04-11	England/QEUH-A9F5D0/2020|20-10-20
+node_482	England/QEUH-A9F5D0/2020|20-10-20
+England/CAMB-7620F/2020|20-03-30	England/QEUH-A9F5D0/2020|20-10-20
+England/BRIS-124C89/2020|20-03-26	England/QEUH-A9F5D0/2020|20-10-20
+England/QEUH-96AEF2/2020|20-08-15	England/QEUH-96AEF2/2020|20-08-15
+node_615	England/QEUH-96AEF2/2020|20-08-15
+node_580	England/QEUH-96AEF2/2020|20-08-15
+Netherlands/NA_436/2020|LR883367.1|20-04-07	Netherlands/NA_436/2020|LR883367.1|20-04-07
+Switzerland/120182/2020|LR860799.1|20-04-27	Netherlands/NA_436/2020|LR883367.1|20-04-07
+England/SHEF-C9FBB/2020|20-04-11	Netherlands/NA_436/2020|LR883367.1|20-04-07
+node_482	Netherlands/NA_436/2020|LR883367.1|20-04-07
+England/CAMB-7620F/2020|20-03-30	Netherlands/NA_436/2020|LR883367.1|20-04-07
+England/BRIS-124C89/2020|20-03-26	Netherlands/NA_436/2020|LR883367.1|20-04-07
+Netherlands/Friesland_33/2020|LR883315.1|20-04-14	Netherlands/Friesland_33/2020|LR883315.1|20-04-14
+node_617	Netherlands/Friesland_33/2020|LR883315.1|20-04-14
+AUS/VIC3114/2020|MT972550.1|20-07-06	AUS/VIC3114/2020|MT972550.1|20-07-06
+node_622	AUS/VIC3114/2020|MT972550.1|20-07-06
+AUS/VIC9664/2020|MW156172.1|20-08-12	AUS/VIC9664/2020|MW156172.1|20-08-12
+Switzerland/120182/2020|LR860799.1|20-04-27	AUS/VIC9664/2020|MW156172.1|20-08-12
+England/SHEF-C9FBB/2020|20-04-11	AUS/VIC9664/2020|MW156172.1|20-08-12
+node_482	AUS/VIC9664/2020|MW156172.1|20-08-12
+England/CAMB-7620F/2020|20-03-30	AUS/VIC9664/2020|MW156172.1|20-08-12
+England/BRIS-124C89/2020|20-03-26	AUS/VIC9664/2020|MW156172.1|20-08-12
+England/MILK-9C4087/2020|20-09-09	England/MILK-9C4087/2020|20-09-09
+node_632	England/MILK-9C4087/2020|20-09-09
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+node_427	England/QEUH-96F349/2020|20-08-17
+Switzerland/120182/2020|LR860799.1|20-04-27	England/QEUH-96F349/2020|20-08-17
+England/SHEF-C9FBB/2020|20-04-11	England/QEUH-96F349/2020|20-08-17
+node_482	England/QEUH-96F349/2020|20-08-17
+England/CAMB-7620F/2020|20-03-30	England/QEUH-96F349/2020|20-08-17
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+England/BRIS-124C89/2020|20-03-26	England/QEUH-96F349/2020|20-08-17
+England/BIRM-5FC3B/2020|20-05-28	England/BIRM-5FC3B/2020|20-05-28
+Switzerland/120182/2020|LR860799.1|20-04-27	England/BIRM-5FC3B/2020|20-05-28
+England/SHEF-C9FBB/2020|20-04-11	England/BIRM-5FC3B/2020|20-05-28
+node_482	England/BIRM-5FC3B/2020|20-05-28
+England/CAMB-7620F/2020|20-03-30	England/BIRM-5FC3B/2020|20-05-28
+node_498	England/BIRM-5FC3B/2020|20-05-28
+England/BRIS-124C89/2020|20-03-26	England/BIRM-5FC3B/2020|20-05-28
+England/PHEC-13ADF/2020|20-03-13	England/PHEC-13ADF/2020|20-03-13
+node_633	England/PHEC-13ADF/2020|20-03-13
+England/ALDP-951E49/2020|20-06-10	England/ALDP-951E49/2020|20-06-10
+Switzerland/120182/2020|LR860799.1|20-04-27	England/ALDP-951E49/2020|20-06-10
+England/SHEF-C9FBB/2020|20-04-11	England/ALDP-951E49/2020|20-06-10
+node_482	England/ALDP-951E49/2020|20-06-10
+England/CAMB-7620F/2020|20-03-30	England/ALDP-951E49/2020|20-06-10
+node_654	England/ALDP-951E49/2020|20-06-10
+England/BRIS-124C89/2020|20-03-26	England/ALDP-951E49/2020|20-06-10
+node_427	England/ALDP-951E49/2020|20-06-10
+England/ALDP-9557A4/2020|20-06-12	England/ALDP-9557A4/2020|20-06-12
+node_636	England/ALDP-9557A4/2020|20-06-12
+USA/CA-CZB-2205/2020|MW035956.1|20-05-27	USA/CA-CZB-2205/2020|MW035956.1|20-05-27
+node_637	USA/CA-CZB-2205/2020|MW035956.1|20-05-27
+USA/CA-CZB-2184/2020|MW035923.1|20-05-26	USA/CA-CZB-2184/2020|MW035923.1|20-05-26
+node_637	USA/CA-CZB-2184/2020|MW035923.1|20-05-26
+Switzerland/220001/2020|LR882220.1|20-07-24	Switzerland/220001/2020|LR882220.1|20-07-24
+node_654	Switzerland/220001/2020|LR882220.1|20-07-24
+Switzerland/120182/2020|LR860799.1|20-04-27	Switzerland/220001/2020|LR882220.1|20-07-24
+England/SHEF-C9FBB/2020|20-04-11	Switzerland/220001/2020|LR882220.1|20-07-24
+node_482	Switzerland/220001/2020|LR882220.1|20-07-24
+England/CAMB-7620F/2020|20-03-30	Switzerland/220001/2020|LR882220.1|20-07-24
+England/BRIS-124C89/2020|20-03-26	Switzerland/220001/2020|LR882220.1|20-07-24
+node_427	Switzerland/220001/2020|LR882220.1|20-07-24
+England/BIRM-6BECD/2020|20-11-17	England/BIRM-6BECD/2020|20-11-17
+node_642	England/BIRM-6BECD/2020|20-11-17
+USA/MS-CDC-6546/2020|MW279423.1|20-08-25	USA/MS-CDC-6546/2020|MW279423.1|20-08-25
+node_644	USA/MS-CDC-6546/2020|MW279423.1|20-08-25
+USA/TX-DSHS-1780/2020|MW425014.1|20-07-07	USA/TX-DSHS-1780/2020|MW425014.1|20-07-07
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+England/ALDP-94A63C/2020|20-06-11	England/ALDP-94A63C/2020|20-06-11
+node_645	England/ALDP-94A63C/2020|20-06-11
+England/ALDP-52A636/2020|20-06-01	England/ALDP-52A636/2020|20-06-01
+node_645	England/ALDP-52A636/2020|20-06-01
+ZW-6983|LR963462.1|20-05-01	ZW-6983|LR963462.1|20-05-01
+node_648	ZW-6983|LR963462.1|20-05-01
+ZW-6978|LR963455.1|20-05-01	ZW-6978|LR963455.1|20-05-01
+node_648	ZW-6978|LR963455.1|20-05-01
+England/ALDP-952A44/2020|20-06-21	England/ALDP-952A44/2020|20-06-21
+node_650	England/ALDP-952A44/2020|20-06-21
+England/QEUH-9B4A22/2020|20-09-07	England/QEUH-9B4A22/2020|20-09-07
+node_650	England/QEUH-9B4A22/2020|20-09-07
+Scotland/CVR3062/2020|20-04-24	Scotland/CVR3062/2020|20-04-24
+node_686	Scotland/CVR3062/2020|20-04-24
+Scotland/CVR2435/2020|20-04-14	Scotland/CVR2435/2020|20-04-14
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+England/OXON-B0922/2020|20-03-28	England/OXON-B0922/2020|20-03-28
+node_687	England/OXON-B0922/2020|20-03-28
+AUS/VIC995/2020|MT451680.1|20-03-31	AUS/VIC995/2020|MT451680.1|20-03-31
+node_687	AUS/VIC995/2020|MT451680.1|20-03-31
+GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07	GHA/WACCBIP_nCoV_GS115/2021|MW571124.1|21-01-07
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+EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25	EGY/CUNCI-HGC9I036/2020|MW504609.1|20-12-25
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+EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03	EGY/CUNCI-HGC12I049/2021|MW595907.1|21-01-03
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+USA/COVID20-0537/2020|MT981422.1|20-06-04	USA/COVID20-0537/2020|MT981422.1|20-06-04
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+node_72	England/CAMB-1AD004/2020|20-04-30
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+USA/VA-DCLS-1388/2020|MW067734.1|20-07	USA/VA-DCLS-1388/2020|MW067734.1|20-07
+node_263	USA/VA-DCLS-1388/2020|MW067734.1|20-07
+Scotland/QEUH-961BB8/2020|20-08-02	Scotland/QEUH-961BB8/2020|20-08-02
+node_264	Scotland/QEUH-961BB8/2020|20-08-02
+Switzerland/250091/2020|LR881897.1|20-08-19	Switzerland/250091/2020|LR881897.1|20-08-19
+node_264	Switzerland/250091/2020|LR881897.1|20-08-19
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+England/PHEC-14F392/2020|20-12-24	England/PHEC-14F392/2020|20-12-24
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+ITA/APU-POLBA09/2020|MW485806.1|20-08-26	ITA/APU-POLBA09/2020|MW485806.1|20-08-26
+node_596	ITA/APU-POLBA09/2020|MW485806.1|20-08-26
+DV_IZSPB_236_S50|LR992121.1|20-08-29	DV_IZSPB_236_S50|LR992121.1|20-08-29
+node_596	DV_IZSPB_236_S50|LR992121.1|20-08-29
+England/MILK-62FD59/2020|20-07-05	England/MILK-62FD59/2020|20-07-05
+node_604	England/MILK-62FD59/2020|20-07-05
+England/ALDP-90DDC7/2020|20-06-26	England/ALDP-90DDC7/2020|20-06-26
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+England/BRIS-12AF02/2020|20-05-01	England/BRIS-12AF02/2020|20-05-01
+node_434	England/BRIS-12AF02/2020|20-05-01
+England/ALDP-9558ED/2020|20-06-12	England/ALDP-9558ED/2020|20-06-12
+node_450	England/ALDP-9558ED/2020|20-06-12
+England/NORT-286255/2020|20-09-16	England/NORT-286255/2020|20-09-16
+node_450	England/NORT-286255/2020|20-09-16
+Switzerland/250060/2020|LR881882.1|20-08-18	Switzerland/250060/2020|LR881882.1|20-08-18
+node_463	Switzerland/250060/2020|LR881882.1|20-08-18
+England/QEUH-A77F0D/2020|20-10-12	England/QEUH-A77F0D/2020|20-10-12
+node_463	England/QEUH-A77F0D/2020|20-10-12
+England/LOND-126DFA5/2020|20-12-27	England/LOND-126DFA5/2020|20-12-27
+Switzerland/120182/2020|LR860799.1|20-04-27	England/LOND-126DFA5/2020|20-12-27
+England/SHEF-C9FBB/2020|20-04-11	England/LOND-126DFA5/2020|20-12-27
+node_482	England/LOND-126DFA5/2020|20-12-27
+England/CAMB-7620F/2020|20-03-30	England/LOND-126DFA5/2020|20-12-27
+England/BRIS-124C89/2020|20-03-26	England/LOND-126DFA5/2020|20-12-27
+Wales/PHWC-4846A4/2020|20-10-24	Wales/PHWC-4846A4/2020|20-10-24
+node_563	Wales/PHWC-4846A4/2020|20-10-24
+England/CAMC-947875/2020|20-07-13	Wales/PHWC-4846A4/2020|20-10-24
+node_647	Wales/PHWC-4846A4/2020|20-10-24
+England/QEUH-AD487C/2020|20-10-26	England/QEUH-AD487C/2020|20-10-26
+node_483	England/QEUH-AD487C/2020|20-10-26
+England/QEUH-9B7B2C/2020|20-09-03	England/QEUH-9B7B2C/2020|20-09-03
+node_483	England/QEUH-9B7B2C/2020|20-09-03
+England/CAMB-72B44/2020|20-03-22	England/CAMB-72B44/2020|20-03-22
+node_501	England/CAMB-72B44/2020|20-03-22
+England/CAMB-822D3/2020|20-04-12	England/CAMB-822D3/2020|20-04-12
+node_501	England/CAMB-822D3/2020|20-04-12
+Japan/TKYE627000_2020/2020|LC593811.1|20-08	Japan/TKYE627000_2020/2020|LC593811.1|20-08
+node_527	Japan/TKYE627000_2020/2020|LC593811.1|20-08
+Japan/TKYE624705_2020/2020|LC593810.1|20-07	Japan/TKYE624705_2020/2020|LC593810.1|20-07
+node_527	Japan/TKYE624705_2020/2020|LC593810.1|20-07
+England/QEUH-9F9265/2020|20-09-26	England/QEUH-9F9265/2020|20-09-26
+node_529	England/QEUH-9F9265/2020|20-09-26
+England/QEUH-98EE43/2020|20-08-25	England/QEUH-98EE43/2020|20-08-25
+node_529	England/QEUH-98EE43/2020|20-08-25
+IND/GBRC455b/2020|MW600453.1|20-12-24	IND/GBRC455b/2020|MW600453.1|20-12-24
+node_533	IND/GBRC455b/2020|MW600453.1|20-12-24
+IND/GBRC455a/2020|MW600436.1|20-12-24	IND/GBRC455a/2020|MW600436.1|20-12-24
+node_533	IND/GBRC455a/2020|MW600436.1|20-12-24
+IND/GBRC455b/2020|MW600453.1|20-12-24	IND/GBRC455a/2020|MW600436.1|20-12-24
+USA/FL-BPHL-2014/2020|MW286586.1|20-06-19	USA/FL-BPHL-2014/2020|MW286586.1|20-06-19
+node_545	USA/FL-BPHL-2014/2020|MW286586.1|20-06-19
+USA/MA_MGH_00693/2020|MT520290.1|20-04-06	USA/MA_MGH_00693/2020|MT520290.1|20-04-06
+node_545	USA/MA_MGH_00693/2020|MT520290.1|20-04-06
+CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13	CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13
+node_543	CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13
+node_544	CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13
+CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27	CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27
+node_543	CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27
+node_544	CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27
+ARG/Cordoba-2858/2020|MW633904.1|20-09-14	ARG/Cordoba-2858/2020|MW633904.1|20-09-14
+node_547	ARG/Cordoba-2858/2020|MW633904.1|20-09-14
+ARG/Cordoba-1484/2020|MW633909.1|20-09-17	ARG/Cordoba-1484/2020|MW633909.1|20-09-17
+node_547	ARG/Cordoba-1484/2020|MW633909.1|20-09-17
+England/MILK-95862C/2020|20-06-11	England/MILK-95862C/2020|20-06-11
+Switzerland/120182/2020|LR860799.1|20-04-27	England/MILK-95862C/2020|20-06-11
+England/SHEF-C9FBB/2020|20-04-11	England/MILK-95862C/2020|20-06-11
+node_482	England/MILK-95862C/2020|20-06-11
+England/CAMB-7620F/2020|20-03-30	England/MILK-95862C/2020|20-06-11
+England/BRIS-124C89/2020|20-03-26	England/MILK-95862C/2020|20-06-11
+node_427	England/MILK-95862C/2020|20-06-11
+node_654	England/MILK-95862C/2020|20-06-11
+England/ALDP-94EF88/2020|20-06-16	England/ALDP-94EF88/2020|20-06-16
+node_565	England/ALDP-94EF88/2020|20-06-16
+Scotland/QEUH-A00DF0/2020|20-10-02	Scotland/QEUH-A00DF0/2020|20-10-02
+Switzerland/120182/2020|LR860799.1|20-04-27	Scotland/QEUH-A00DF0/2020|20-10-02
+England/SHEF-C9FBB/2020|20-04-11	Scotland/QEUH-A00DF0/2020|20-10-02
+node_482	Scotland/QEUH-A00DF0/2020|20-10-02
+England/CAMB-7620F/2020|20-03-30	Scotland/QEUH-A00DF0/2020|20-10-02
+England/BRIS-124C89/2020|20-03-26	Scotland/QEUH-A00DF0/2020|20-10-02
+England/ALDP-9CC5BD/2020|20-09-15	England/ALDP-9CC5BD/2020|20-09-15
+node_427	England/ALDP-9CC5BD/2020|20-09-15
+Switzerland/120182/2020|LR860799.1|20-04-27	England/ALDP-9CC5BD/2020|20-09-15
+England/SHEF-C9FBB/2020|20-04-11	England/ALDP-9CC5BD/2020|20-09-15
+node_482	England/ALDP-9CC5BD/2020|20-09-15
+England/CAMB-7620F/2020|20-03-30	England/ALDP-9CC5BD/2020|20-09-15
+node_654	England/ALDP-9CC5BD/2020|20-09-15
+England/BRIS-124C89/2020|20-03-26	England/ALDP-9CC5BD/2020|20-09-15
+England/ALDP-9BEB16/2020|20-09-09	England/ALDP-9BEB16/2020|20-09-09
+node_614	England/ALDP-9BEB16/2020|20-09-09
+England/ALDP-A95376/2020|20-10-19	England/ALDP-A95376/2020|20-10-19
+node_614	England/ALDP-A95376/2020|20-10-19
+England/QEUH-B10460/2020|20-11-02	England/QEUH-B10460/2020|20-11-02
+England/CAMC-947875/2020|20-07-13	England/QEUH-B10460/2020|20-11-02
+node_647	England/QEUH-B10460/2020|20-11-02
+Scotland/QEUH-96D5CD/2020|20-08-20	Scotland/QEUH-96D5CD/2020|20-08-20
+node_647	Scotland/QEUH-96D5CD/2020|20-08-20
+England/CAMB-1AE7FF/2020|20-04-29	England/CAMB-1AE7FF/2020|20-04-29
+node_652	England/CAMB-1AE7FF/2020|20-04-29
+England/CAMB-762D2/2020|20-03-28	England/CAMB-762D2/2020|20-03-28
+Switzerland/120182/2020|LR860799.1|20-04-27	England/CAMB-762D2/2020|20-03-28
+England/SHEF-C9FBB/2020|20-04-11	England/CAMB-762D2/2020|20-03-28
+node_482	England/CAMB-762D2/2020|20-03-28
+England/CAMB-7620F/2020|20-03-30	England/CAMB-762D2/2020|20-03-28
+node_427	England/CAMB-762D2/2020|20-03-28
+England/BRIS-124C89/2020|20-03-26	England/CAMB-762D2/2020|20-03-28
+node_654	England/CAMB-762D2/2020|20-03-28
+USA/WA-S1222/2020|MT821613.1|20-05-08	USA/WA-S1222/2020|MT821613.1|20-05-08
+node_654	USA/WA-S1222/2020|MT821613.1|20-05-08
+USA/WA-S1655/2020|MT834136.1|20-05-29	USA/WA-S1655/2020|MT834136.1|20-05-29
+node_655	USA/WA-S1655/2020|MT834136.1|20-05-29
+node_436	USA/WA-S1655/2020|MT834136.1|20-05-29
+USA/WA-S2012/2020|MT831128.1|20-06-04	USA/WA-S1655/2020|MT834136.1|20-05-29
+England/MILK-BB0F16/2020|20-11-17	England/MILK-BB0F16/2020|20-11-17
+node_37	England/MILK-BB0F16/2020|20-11-17
+England/CAMC-BBDD4C/2020|20-11-22	England/CAMC-BBDD4C/2020|20-11-22
+node_37	England/CAMC-BBDD4C/2020|20-11-22
+Scotland/EDB11342/2020|20-12-26	Scotland/EDB11342/2020|20-12-26
+node_77	Scotland/EDB11342/2020|20-12-26
+England/QEUH-CAF17D/2020|20-12-15	England/QEUH-CAF17D/2020|20-12-15
+node_76	England/QEUH-CAF17D/2020|20-12-15
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	USA/CA-QDX-3684/2021|MW545275.1|21-01-08
+node_137	USA/CA-QDX-3684/2021|MW545275.1|21-01-08
+USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13	USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13
+node_137	USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13
+Scotland/QEUH-969725/2020|20-08-14	Scotland/QEUH-969725/2020|20-08-14
+node_198	Scotland/QEUH-969725/2020|20-08-14
+England/QEUH-AD1648/2020|20-10-26	England/QEUH-AD1648/2020|20-10-26
+node_198	England/QEUH-AD1648/2020|20-10-26
+England/MILK-A192C8/2020|20-10-01	England/MILK-A192C8/2020|20-10-01
+node_226	England/MILK-A192C8/2020|20-10-01
+England/QEUH-9F3FDD/2020|20-09-24	England/QEUH-9F3FDD/2020|20-09-24
+node_226	England/QEUH-9F3FDD/2020|20-09-24
+England/CAMC-1263B05/2021|21-02-10	England/CAMC-1263B05/2021|21-02-10
+node_234	England/CAMC-1263B05/2021|21-02-10
+England/QEUH-AD3822/2020|20-10-26	England/QEUH-AD3822/2020|20-10-26
+node_234	England/QEUH-AD3822/2020|20-10-26
+England/MILK-9A94E6/2020|20-09-01	England/MILK-9A94E6/2020|20-09-01
+node_236	England/MILK-9A94E6/2020|20-09-01
+England/MILK-566C5A/2020|20-06-12	England/MILK-566C5A/2020|20-06-12
+node_236	England/MILK-566C5A/2020|20-06-12
+England/CAMC-C2CDFC/2020|20-12-07	England/CAMC-C2CDFC/2020|20-12-07
+node_237	England/CAMC-C2CDFC/2020|20-12-07
+England/MILK-CAA0EE/2020|20-12-18	England/MILK-CAA0EE/2020|20-12-18
+node_237	England/MILK-CAA0EE/2020|20-12-18
+England/TFCI-26FA9B7/2020|20-12-31	England/TFCI-26FA9B7/2020|20-12-31
+node_243	England/TFCI-26FA9B7/2020|20-12-31
+England/MILK-B94ACC/2020|20-11-13	England/MILK-B94ACC/2020|20-11-13
+node_243	England/MILK-B94ACC/2020|20-11-13
+England/QEUH-96A29C/2020|20-08-13	England/QEUH-96A29C/2020|20-08-13
+node_246	England/QEUH-96A29C/2020|20-08-13
+England/ALDP-9EA6D4/2020|20-09-24	England/ALDP-9EA6D4/2020|20-09-24
+node_246	England/ALDP-9EA6D4/2020|20-09-24
+England/MILK-A6AEC4/2020|20-10-09	England/MILK-A6AEC4/2020|20-10-09
+node_247	England/MILK-A6AEC4/2020|20-10-09
+England/MILK-B889A0/2020|20-11-14	England/MILK-B889A0/2020|20-11-14
+node_247	England/MILK-B889A0/2020|20-11-14
+England/MILK-ACEE55/2020|20-10-21	England/MILK-ACEE55/2020|20-10-21
+node_261	England/MILK-ACEE55/2020|20-10-21
+Switzerland/260079/2020|LR882418.1|20-08-25	Switzerland/260079/2020|LR882418.1|20-08-25
+node_261	Switzerland/260079/2020|LR882418.1|20-08-25
+USA/WI-UW-1288/2020|MW035458.1|20-09-02	USA/WI-UW-1288/2020|MW035458.1|20-09-02
+node_302	USA/WI-UW-1288/2020|MW035458.1|20-09-02
+USA/WA-S2808/2020|MW077495.1|20-08-31	USA/WA-S2808/2020|MW077495.1|20-08-31
+node_302	USA/WA-S2808/2020|MW077495.1|20-08-31
+England/CAMC-B3582D/2020|20-11-05	England/CAMC-B3582D/2020|20-11-05
+node_334	England/CAMC-B3582D/2020|20-11-05
+England/MILK-A796E8/2020|20-10-14	England/MILK-A796E8/2020|20-10-14
+node_334	England/MILK-A796E8/2020|20-10-14
+England/MILK-BB0031/2020|20-11-18	England/MILK-BB0031/2020|20-11-18
+node_363	England/MILK-BB0031/2020|20-11-18
+Scotland/QEUH-96B4E0/2020|20-08-17	Scotland/QEUH-96B4E0/2020|20-08-17
+node_364	Scotland/QEUH-96B4E0/2020|20-08-17
+England/PHEC-152C73/2020|20-11-16	England/PHEC-152C73/2020|20-11-16
+node_362	England/PHEC-152C73/2020|20-11-16
+England/MILK-9AA782/2020|20-08-31	England/MILK-9AA782/2020|20-08-31
+node_364	England/MILK-9AA782/2020|20-08-31
+England/ALDP-B82A0D/2020|20-11-14	England/ALDP-B82A0D/2020|20-11-14
+node_437	England/ALDP-B82A0D/2020|20-11-14
+USA/MD-MDH-0664/2021|MW524034.1|21-01-04	USA/MD-MDH-0664/2021|MW524034.1|21-01-04
+node_437	USA/MD-MDH-0664/2021|MW524034.1|21-01-04
+England/MILK-A79D10/2020|20-10-15	England/MILK-A79D10/2020|20-10-15
+node_458	England/MILK-A79D10/2020|20-10-15
+node_494	England/MILK-A79D10/2020|20-10-15
+England/PHEC-148F95/2020|20-10-15	England/PHEC-148F95/2020|20-10-15
+node_458	England/PHEC-148F95/2020|20-10-15
+England/MILK-A180DE/2020|20-10-01	England/MILK-A180DE/2020|20-10-01
+node_466	England/MILK-A180DE/2020|20-10-01
+England/NORW-222D0F/2020|20-12-20	England/NORW-222D0F/2020|20-12-20
+node_480	England/NORW-222D0F/2020|20-12-20
+England/MILK-F72F49/2021|21-01-05	England/MILK-F72F49/2021|21-01-05
+node_480	England/MILK-F72F49/2021|21-01-05
+England/ALDP-94DD07/2020|20-06-19	England/ALDP-94DD07/2020|20-06-19
+node_502	England/ALDP-94DD07/2020|20-06-19
+England/ALDP-49EC3C/2020|20-05-20	England/ALDP-49EC3C/2020|20-05-20
+node_502	England/ALDP-49EC3C/2020|20-05-20
+PER/covper024/2020|MW030255.1|20-07-04	PER/covper024/2020|MW030255.1|20-07-04
+node_503	PER/covper024/2020|MW030255.1|20-07-04
+PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08	PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08
+node_503	PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08
+PER/covper011/2020|MW030242.1|20-07-04	PER/covper011/2020|MW030242.1|20-07-04
+node_427	PER/covper011/2020|MW030242.1|20-07-04
+node_437	PER/covper011/2020|MW030242.1|20-07-04
+Switzerland/120182/2020|LR860799.1|20-04-27	PER/covper011/2020|MW030242.1|20-07-04
+node_654	PER/covper011/2020|MW030242.1|20-07-04
+England/SHEF-C9FBB/2020|20-04-11	PER/covper011/2020|MW030242.1|20-07-04
+node_482	PER/covper011/2020|MW030242.1|20-07-04
+England/CAMB-7620F/2020|20-03-30	PER/covper011/2020|MW030242.1|20-07-04
+England/BRIS-124C89/2020|20-03-26	PER/covper011/2020|MW030242.1|20-07-04
+PER/covper040/2020|MW030271.1|20-05-05	PER/covper040/2020|MW030271.1|20-05-05
+node_504	PER/covper040/2020|MW030271.1|20-05-05
+England/MILK-B1553B/2020|20-10-23	England/MILK-B1553B/2020|20-10-23
+node_505	England/MILK-B1553B/2020|20-10-23
+England/MILK-66F889/2020|20-07-03	England/MILK-66F889/2020|20-07-03
+Switzerland/120182/2020|LR860799.1|20-04-27	England/MILK-66F889/2020|20-07-03
+England/SHEF-C9FBB/2020|20-04-11	England/MILK-66F889/2020|20-07-03
+node_482	England/MILK-66F889/2020|20-07-03
+England/CAMB-7620F/2020|20-03-30	England/MILK-66F889/2020|20-07-03
+England/BRIS-124C89/2020|20-03-26	England/MILK-66F889/2020|20-07-03
+England/QEUH-96BAA2/2020|20-08-14	England/QEUH-96BAA2/2020|20-08-14
+node_508	England/QEUH-96BAA2/2020|20-08-14
+Wales/ALDP-B19FFD/2020|20-11-01	Wales/ALDP-B19FFD/2020|20-11-01
+node_508	Wales/ALDP-B19FFD/2020|20-11-01
+SRB/NS19622-16-06/2020|MW327528.1|20-06-15	SRB/NS19622-16-06/2020|MW327528.1|20-06-15
+node_509	SRB/NS19622-16-06/2020|MW327528.1|20-06-15
+PER/covper018/2020|MW030249.1|20-07-03	PER/covper018/2020|MW030249.1|20-07-03
+Switzerland/120182/2020|LR860799.1|20-04-27	PER/covper018/2020|MW030249.1|20-07-03
+England/SHEF-C9FBB/2020|20-04-11	PER/covper018/2020|MW030249.1|20-07-03
+node_482	PER/covper018/2020|MW030249.1|20-07-03
+England/CAMB-7620F/2020|20-03-30	PER/covper018/2020|MW030249.1|20-07-03
+England/BRIS-124C89/2020|20-03-26	PER/covper018/2020|MW030249.1|20-07-03
+node_427	PER/covper018/2020|MW030249.1|20-07-03
+node_654	PER/covper018/2020|MW030249.1|20-07-03
+England/CAMC-C3E586/2020|20-12-10	England/CAMC-C3E586/2020|20-12-10
+node_518	England/CAMC-C3E586/2020|20-12-10
+England/CAMC-DE5550/2020|20-12-29	England/CAMC-DE5550/2020|20-12-29
+node_518	England/CAMC-DE5550/2020|20-12-29
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+Switzerland/120182/2020|LR860799.1|20-04-27	Japan/TKYE630414_2020/2020|LC593818.1|20-08
+England/SHEF-C9FBB/2020|20-04-11	Japan/TKYE630414_2020/2020|LC593818.1|20-08
+node_482	Japan/TKYE630414_2020/2020|LC593818.1|20-08
+England/CAMB-7620F/2020|20-03-30	Japan/TKYE630414_2020/2020|LC593818.1|20-08
+England/BRIS-124C89/2020|20-03-26	Japan/TKYE630414_2020/2020|LC593818.1|20-08
diff -r 000000000000 -r 359daa4b6d10 test-data/test_23_equally_parsimonious.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_23_equally_parsimonious.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,1097 @@
+sample	equally_parsimonious_placements	neighborhood_size
+England/BRIS-1853249/2020|20-04-02	4	11
+Wales/PHWC-25B04/2020|20-03-24	4	11
+NPL/61-TW/2020|MT072688.1|20-01-13	1	0
+Wales/LIVE-A6831/2020|20-03-16	4	11
+Scotland/EDB1317/2020|20-04-09	3	11
+Scotland/EDB354/2020|20-03-30	4	11
+England/SHEF-BFF8B/2020|20-03-25	1	0
+England/LCST-24D7202/2020|20-06-22	1	0
+England/SHEF-BFFC7/2020|20-03-25	4	11
+England/PHEC-1E01E/2020|20-04-03	4	11
+DP0476/2020|LC571003.1|20-02-16	1	0
+DP0191/2020|LC570980.1|20-02-15	1	0
+England/LIVE-A5D06/2020|20-03-17	4	11
+England/LIVE-A065B/2020|20-05-27	4	11
+USA/CA-CZB-1091/2020|MT460091.1|20-05-01	4	11
+USA/CA-CZB-11876/2020|MW276506.1|20-04-08	4	11
+USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24	4	11
+NED/NB02_13KS/2020|MT457397.1|20-04-29	4	11
+USA/CA-QDX-1986/2020|MW190732.1|20-03-18	1	0
+USA/CA-CZB-1250/2020|MT534320.1|20-04-12	4	11
+USA/CA-CZB-1015/2020|MT438733.1|20-04-22	1	0
+USA/CA-CZB-1073/2020|MT449664.1|20-04-21	1	0
+England/BRIS-1258A2/2020|20-03-29	1	0
+England/SHEF-BFEBB/2020|20-03-24	1	0
+USA/CA-CZB-1041/2020|MT438759.1|20-04-22	1	0
+USA/CA-CZB-1051/2020|MT449644.1|20-04-06	1	0
+England/LIVE-9E66F/2020|20-04-10	4	11
+Scotland/CVR705/2020|20-03-26	4	11
+England/SHEF-BFF21/2020|20-03-25	1	0
+England/LIVE-A4C46/2020|20-03-12	1	0
+Switzerland/100159/2020|LR884273.1|20-03-16	1	0
+England/EXET-135818/2020|20-04-11	6	13
+France/40002VJ/2020|MT470179.1|20-03	7	15
+Wales/PHWC-310CA/2020|20-04-11	2	0
+Scotland/GCVR-171160/2020|20-03-26	4	11
+England/BRIS-130E2A/2020|20-03-24	4	11
+USA/WI-UW-298/2020|MT706406.1|20-04-13	1	0
+USA/WI-UW-314/2020|MT706422.1|20-04-16	1	0
+USA/WI-UW-325/2020|MT706432.1|20-04-24	2	2
+USA/WI-UW-290/2020|MT706398.1|20-04-08	1	0
+Scotland/CVR3488/2020|20-05-12	1	0
+Scotland/CVR780/2020|20-03-27	1	0
+Scotland/EDB5629/2020|20-03-24	1	0
+HKG/HKU-904a/2020|MT365032.1|20-01-30	2	4
+Scotland/EDB5040/2020|20-04-02	1	0
+England/LOND-126031F/2020|20-03-15	1	0
+Scotland/EDB046/2020|20-03-15	5	13
+England/BRIS-12EEB6/2020|20-04-22	1	0
+Scotland/EDB199/2020|20-03-26	1	0
+England/CAMB-74A09/2020|20-03-18	1	0
+England/ALDP-9EE3AC/2020|20-05-06	1	0
+USA/WA3-UW1/2020|MT163716.1|20-02-27	1	0
+SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29	1	0
+England/ALDP-52C0FA/2020|20-06-01	1	0
+England/LIVE-9D7D6/2020|20-04-15	1	0
+Japan/TKYE63557_2020/2020|LC581365.1|20-03	1	0
+Japan/TKYE64688_2020/2020|LC581375.1|20-03	1	0
+USA/CA-QDX-33/2020|MT614459.1|20-03-15	1	0
+USA/DC-HP00063/2020|MT646075.1|20-03-13	1	0
+England/PHEC-1A601/2020|20-03-04	1	0
+England/PHEC-2275E/2020|20-06-22	1	0
+USA/NY-QDX-1999/2020|MW190795.1|20-03-16	1	0
+USA/NY-QDX-1969/2020|MW190709.1|20-03-15	1	0
+Wales/PHWC-285F4/2020|20-04-01	2	6
+England/BRIS-130965/2020|20-04-13	2	6
+Scotland/CVR44/2020|20-03-13	1	0
+Scotland/CVR839/2020|20-03-27	1	0
+Scotland/GCVR-170107/2020|20-03-23	1	0
+Scotland/CVR207/2020|20-03-18	1	0
+England/CAMB-8042A/2020|20-04-10	1	0
+England/CAMB-737B8/2020|20-03-30	6	13
+USA/WA-S885/2020|MT642386.1|20-04-22	1	0
+USA/UT-QDX-1870/2020|MW190618.1|20-03-16	1	0
+England/BRIS-1265AA/2020|20-04-10	1	0
+AUS/NT38/2020|MT641726.1|20	1	0
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+IND/Isolate_9088/2020|MW555597.1|20-06-30	1	0
+England/BRIS-125347/2020|20-03-27	1	0
+IND/763/2020|MT577009.1|20	1	0
+England/CAMB-7772D/2020|20-03-31	4	11
+England/BRIS-12208F/2020|20-03-21	4	11
+Scotland/EDB1824/2020|20-04-16	1	0
+Spain/H12_46/2020|LR884009.1|20-04-08	2	0
+USA/MN-MDH-1475/2020|MT920008.1|20-03-23	2	4
+USA/CA-CZB-1615/2020|MT628267.1|20-04-14	2	4
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+AUS/VIC1255/2020|MT451830.1|20-04-11	1	0
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+England/NORT-284A9B/2020|20-03-25	1	0
+Scotland/CVR10/2020|20-03-10	1	0
+England/CAMB-75BD8/2020|20-03-29	1	0
+UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01	1	0
+USA/WI-UW-26/2020|MT706147.1|20-03-24	1	0
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+USA/WI-UW-558/2020|MT750137.1|20-06-25	1	0
+AUS/VIC2260/2020|MT972173.1|20-06-22	1	0
+England/EXET-1358BE/2020|20-04-15	1	0
+USA/FL-BPHL-0553/2020|MT834693.1|20-06-30	2	5
+EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02	3	7
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+Switzerland/100198/2020|LR884312.1|20-03-17	1	0
+England/NOTT-10E1B3/2020|20-03-19	5	12
+USA/WI-UW-37/2020|MT706158.1|20-03-22	2	10
+Scotland/CVR2927/2020|20-04-22	1	0
+Scotland/GCVR-173C30/2020|20-04-07	1	0
+USA/CA-CZB-2091/2020|MT750490.1|20-05-07	2	4
+Switzerland/140091/2020|LR824563.1|20-04-18	1	0
+England/BRIS-12755E/2020|20-04-22	2	7
+England/BRIS-12468B/2020|20-04-09	2	16
+England/NORW-E9DF7/2020|20-05-02	1	0
+Scotland/EDB156/2020|20-03-23	1	0
+Wales/PHWC-27B20/2020|20-03-30	1	0
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+Wales/PHWC-29E43/2020|20-04-04	1	0
+England/LOND-D3534/2020|20-03-27	1	0
+England/PHEC-20C24/2020|20-04-21	1	0
+England/CAMB-7D2EA/2020|20-04-06	1	0
+England/LIVE-A63E5/2020|20-03-18	1	0
+Wales/PHWC-260C8/2020|20-03-26	1	0
+England/BRIS-12F969/2020|20-03-30	1	0
+England/PHEC-2083F/2020|20-04-13	2	2
+Wales/PHWC-16C6F0/2020|20-06-09	1	0
+Wales/PHWC-27461/2020|20-03-31	1	0
+Wales/PHWC-29F13/2020|20-04-01	1	0
+IND/GBRC99/2020|MT509504.1|20-05-06	1	0
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+IND/GBRC128/2020|MT539172.1|20-05-02	1	0
+IND/GBRC123/2020|MT539176.1|20-05-02	1	0
+POL/PL_MCB_32/2020|MW273814.1|20-04-22	2	9
+POL/PL_MCB_75/2020|MW273857.1|20-04-16	1	0
+England/CAMB-7BED9/2020|20-04-04	1	0
+Netherlands/NA_302/2020|LR878041.1|20-04-01	1	0
+USA/WI-UW-1385/2020|MW035549.1|20-09-06	1	0
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+Northern_Ireland/NIRE-1022CB/2020|20-03-25	1	0
+Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27	1	0
+Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20	2	9
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+USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07	1	0
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+AUS/VIC961/2020|MT451653.1|20-03-27	4	11
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+Spain/LP19_4952/2020|LR884066.1|20-03-07	1	0
+USA/COVID20-0008/2020|MT764174.1|20-03-10	1	0
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+England/CAMB-76515/2020|20-03-29	1	0
+England/CAMB-1AE294/2020|20-04-27	1	0
+England/LEED-2A8D10/2020|20-03-31	1	0
+England/CAMB-1AC6F4/2020|20-04-21	2	11
+Scotland/EDB2049/2020|20-04-18	1	0
+England/CAMB-7EBDF/2020|20-04-07	1	0
+Scotland/CVR3417/2020|20-05-07	2	11
+Scotland/CVR1519/2020|20-04-03	1	0
+England/MILK-93B73B/2020|20-06-21	2	11
+England/MILK-9589F6/2020|20-06-15	2	4
+England/BRIS-128441/2020|20-04-16	1	0
+England/CAMB-7C39D/2020|20-04-13	2	11
+England/ALDP-50085E/2020|20-06-27	2	11
+England/PHEC-127E8/2020|20-03-28	1	0
+USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29	1	0
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+Scotland/CVR2931/2020|20-04-22	1	0
+Scotland/GCVR-172150/2020|20-03-30	1	0
+England/BRIS-124885/2020|20-03-24	1	0
+England/BRIS-122C4F/2020|20-04-02	1	0
+USA/WI-UW-1046/2020|MT928999.1|20-07-29	1	0
+USA/TX-DSHS-0409/2020|MW127871.1|20-06-01	4	23
+Scotland/CVR3054/2020|20-04-24	3	23
+England/MILK-95698F/2020|20-06-06	1	0
+England/CAMB-79ECC/2020|20-04-01	1	0
+USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09	1	0
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+England/MILK-974596/2020|20-08-17	1	0
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+England/MILK-9A565D/2020|20-09-03	2	9
+USA/NM-QDX-264/2020|MT806796.1|20-04-30	2	9
+USA/CA-CZB-10902/2020|MW276406.1|20-08-19	3	9
+Scotland/EDB1198/2020|20-04-08	2	9
+England/PHEC-20A84/2020|20-04-20	2	9
+Scotland/EDB6324/2020|20-06-01	2	9
+Scotland/EDB4579/2020|20-05-06	2	9
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+France/10036BG/2020|MT470106.1|20-03	1	0
+IHUCOVID-0033|LR794417.1|?	1	0
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+IHUCOVID-0133|LR794459.1|?	1	0
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+Switzerland/101166/2020|LR824397.1|20-03-31	1	0
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diff -r 000000000000 -r 359daa4b6d10 test-data/test_24_restricted.pb
Binary file test-data/test_24_restricted.pb has changed
diff -r 000000000000 -r 359daa4b6d10 test-data/test_25_renamed.pb
Binary file test-data/test_25_renamed.pb has changed
diff -r 000000000000 -r 359daa4b6d10 test-data/test_26_descendants.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_26_descendants.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,4 @@
+#node_id	descendants
+node_654	USA/WA-S1222/2020|MT821613.1|20-05-08,USA/WA-S1655/2020|MT834136.1|20-05-29,Spain/R60/2020|LR884131.1|20-04-17,USA/CA-CZB-5682/2020|MW276261.1|20-07-23,England/MILK-A06194/2020|20-10-01,England/CAMC-B32AA2/2020|20-11-05,
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	USA/CA-QDX-3684/2021|MW545275.1|21-01-08,
+England/LIVE-DAB556/2020|20-10-18	England/LIVE-DAB556/2020|20-10-18,
diff -r 000000000000 -r 359daa4b6d10 test-data/test_26_recombination.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_26_recombination.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,137 @@
+#recomb_node_id	breakpoint-1_interval	breakpoint-2_interval	donor_node_id	donor_is_sibling	donor_parsimony	acceptor_node_id	acceptor_is_sibling	acceptor_parsimony	original_parsimony	min_starting_parsimony	recomb_parsimony
+node_654	(0,241)	(14408,19839)	node_191	n	9	node_429	n	3	7	3	3
+node_654	(0,14408)	(19839,29784)	node_429	n	3	node_427	n	4	7	3	3
+node_654	(0,14408)	(28881,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(0,14408)	(23403,29784)	node_429	n	3	node_427	n	4	7	3	3
+node_654	(241,14408)	(28882,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(1059,3037)	(15933,19839)	node_108	n	10	node_429	n	3	7	3	3
+node_654	(3037,14408)	(28883,29784)	node_429	n	3	node_191	n	9	7	3	3
+node_654	(3037,14408)	(16968,19839)	node_108	n	10	node_429	n	3	7	3	3
+node_654	(15933,15933)	(28883,29784)	node_429	n	3	node_191	n	9	7	3	3
+node_654	(15933,15933)	(28882,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(15933,15933)	(28881,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(15933,15933)	(23403,29784)	node_429	n	3	node_427	n	4	7	3	3
+node_654	(15933,15933)	(19839,29784)	node_429	n	3	node_427	n	4	7	3	3
+node_654	(16968,19839)	(28883,29784)	node_429	n	3	node_191	n	9	7	3	3
+node_654	(16968,19839)	(28881,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(16968,19839)	(28882,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(16968,16968)	(28881,29784)	node_429	n	3	node_426	n	5	7	3	3
+node_654	(16968,16968)	(23403,29784)	node_429	n	3	node_427	n	4	7	3	3
+node_654	(19839,23403)	(28882,29784)	node_427	n	4	node_429	n	3	7	3	3
+node_654	(19839,23403)	(28883,29784)	node_427	n	4	node_429	n	3	7	3	3
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(0,241)	(2516,10323)	node_108	n	19	node_135	y	15	19	15	15
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(0,1059)	(3037,3712)	node_108	n	19	node_135	y	15	19	15	15
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(0,1059)	(23403,26681)	node_135	y	15	node_133	n	17	19	15	16
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(0,1059)	(22018,22917)	node_135	y	15	node_133	n	17	19	15	16
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(0,1059)	(14408,15452)	node_73	n	17	node_135	y	15	19	15	14
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(0,1059)	(10323,22018)	node_73	n	17	node_135	y	15	19	15	14
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(241,1059)	(2597,10323)	node_108	n	19	node_135	y	15	19	15	15
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(241,1059)	(25563,26681)	node_135	y	15	node_133	n	17	19	15	16
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(20268,22018)	node_275	n	19	node_135	y	15	19	15	14
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(22018,22917)	node_135	y	15	node_133	n	17	19	15	16
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(14408,15452)	node_73	n	17	node_135	y	15	19	15	14
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(23403,26681)	node_135	y	15	node_133	n	17	19	15	16
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(3712,10323)	node_108	n	19	node_135	y	15	19	15	15
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(25563,26681)	node_135	y	15	node_133	n	17	19	15	16
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(10323,20268)	node_73	n	17	node_135	y	15	19	15	14
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2516,2516)	(28272,29362)	node_135	y	15	node_133	n	17	19	15	15
+USA/CA-QDX-3684/2021|MW545275.1|21-01-08	(2597,3037)	(25563,26681)	node_135	y	15	node_133	n	17	19	15	16
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+England/LIVE-DAB556/2020|20-10-18	(174,241)	(3037,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(174,241)	(14408,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(174,1059)	(23403,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(241,1059)	(14408,27964)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(1059,3037)	(23403,27964)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(3037,14408)	(25546,27964)	node_108	n	3	node_133	n	3	7	3	2
diff -r 000000000000 -r 359daa4b6d10 test-data/test_27_descendants.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_27_descendants.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,2 @@
+#node_id	descendants
+England/LIVE-DAB556/2020|20-10-18	England/LIVE-DAB556/2020|20-10-18,
diff -r 000000000000 -r 359daa4b6d10 test-data/test_27_recombination.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_27_recombination.tabular	Mon Feb 02 14:38:06 2026 +0000
@@ -0,0 +1,9 @@
+#recomb_node_id	breakpoint-1_interval	breakpoint-2_interval	donor_node_id	donor_is_sibling	donor_parsimony	acceptor_node_id	acceptor_is_sibling	acceptor_parsimony	original_parsimony	min_starting_parsimony	recomb_parsimony
+England/LIVE-DAB556/2020|20-10-18	(174,174)	(3037,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(174,1059)	(3037,27964)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(174,1059)	(14408,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(174,3037)	(23403,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(174,174)	(23403,25546)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(1059,3037)	(14408,27964)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(3037,14408)	(23403,27964)	node_108	n	3	node_133	n	3	7	3	2
+England/LIVE-DAB556/2020|20-10-18	(14408,23403)	(25546,27964)	node_108	n	3	node_133	n	3	7	3	2