Mercurial > repos > iuc > usher
diff test-data/test_18_path_mutations.tabular @ 3:3f8537272a1b draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/usher commit d44fdcd836306a2096d50bebb28d8faacdb0fbfd
| author | iuc |
|---|---|
| date | Mon, 02 Feb 2026 14:38:35 +0000 |
| parents | 3f724158111d |
| children |
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--- a/test-data/test_18_path_mutations.tabular Sun Dec 19 15:51:14 2021 +0000 +++ b/test-data/test_18_path_mutations.tabular Mon Feb 02 14:38:35 2026 +0000 @@ -1,442 +1,441 @@ -sample_id path_from_root -England/BRIS-1853249/2020|20-04-02 (1) > C24034T (2) > C29518T -NPL/61-TW/2020|MT072688.1|20-01-13 (1) > C24034T (2) > -Wales/PHWC-25B04/2020|20-03-24 (1) > C875T (3) > A20637G -Wales/LIVE-A6831/2020|20-03-16 (1) > C875T (3) > T14859C -Scotland/EDB354/2020|20-03-30 (1) > C7423T,A29780C -England/SHEF-BFF8B/2020|20-03-25 (1) > C20270T (5) > C1473T -England/SHEF-BFFC7/2020|20-03-25 (1) > T4949C (8) > G28027T -England/PHEC-1E01E/2020|20-04-03 (1) > T4949C (8) > C22445T -DP0476/2020|LC571003.1|20-02-16 (1) > C29635T (9) > C29592T -DP0191/2020|LC570980.1|20-02-15 (1) > C29635T (9) > A3854G -USA/CA-CZB-1091/2020|MT460091.1|20-05-01 (1) > A14940G (660) > C15024T -USA/CA-CZB-11876/2020|MW276506.1|20-04-08 (1) > A14940G (660) > A26120G -USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 (1) > T514C,C22033A -USA/CA-QDX-1986/2020|MW190732.1|20-03-18 (1) > C11050T,A12557G,C24904T,A27359G -USA/CA-CZB-1015/2020|MT438733.1|20-04-22 (1) > T15867A,C25692T -USA/CA-CZB-1051/2020|MT449644.1|20-04-06 (1) > G7273A,C10277T -USA/CA-QDX-33/2020|MT614459.1|20-03-15 (1) > C6312A,C13730T,C23929T,C28311T (674) > C66T -USA/DC-HP00063/2020|MT646075.1|20-03-13 (1) > C6312A,C13730T,C23929T,C28311T (674) > C11455T -England/PHEC-1A601/2020|20-03-04 (1) > G1397A,T28688C,G29742T (699) > A19526G -England/ALDP-9EE3AC/2020|20-05-06 (1) > C14805T,G26144T (10) > G20991T,C23707T -England/CAMB-8042A/2020|20-04-10 (1) > C14805T,G26144T (10) > A2480G,C2558T,A4015T -SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 (1) > C14805T,G26144T (10) > G5572T,C28311T -England/LIVE-9D7D6/2020|20-04-15 (1) > G29711T (667) > C1218T,C27493T,G27806T -USA/WI-UW-314/2020|MT706422.1|20-04-16 (1) > G29711T (667) > A4838G,C7420T,C14937T,C20148T,G25907T -Scotland/CVR780/2020|20-03-27 (1) > C28854T (671) > C5997T,C12710T -Japan/TKYE63557_2020/2020|LC581365.1|20-03 (1) > C28854T (671) > C11752T,C25665T,C26447T,A27700G,T28854C,T28912C -MYS/188407/2020|MT372480.1|20-03-18 (1) > C6312A,C13730T,C23929T,C28311T (674) > C6310A,C19524T,T25473C -USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > -USA/COVID20-0008/2020|MT764174.1|20-03-10 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > T18736C -USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 (1) > C8782T,T28144C (676) > T490A,C3177T,C24034T,T26729C,G28077C (697) > -AUS/VIC1878/2020|MT745600.1|20-03-29 (1) > G1397A,T28688C,G29742T (699) > C1076T,A28955T -England/SHEF-BFF21/2020|20-03-25 (1) > C20270T (5) > A18671G,A29683T -Switzerland/100159/2020|LR884273.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > C16995T -England/LOND-126031F/2020|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C12400T (12) > A20511G -USA/NY-QDX-1999/2020|MW190795.1|20-03-16 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > G10754A -USA/NY-QDX-1969/2020|MW190709.1|20-03-15 (1) > C14805T,G26144T (10) > T17247C (11) > C8078T (13) > -Scotland/CVR44/2020|20-03-13 (1) > C14805T,G26144T (10) > T17247C (11) > G443A,A1587G -Scotland/CVR207/2020|20-03-18 (1) > C14805T,G26144T (10) > T17247C (11) > C988T,G12832A -Spain/R11/2020|LR884126.1|20-03-06 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > T3037C -Spain/LP19_4952/2020|LR884066.1|20-03-07 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > C3037T,A20268G (680) > -Spain/R10_33/2020|LR884127.1|20-03-02 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > T25979G -Scotland/EDB5629/2020|20-03-24 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G9928T,G23403A (679) > G27870T -Scotland/EDB5040/2020|20-04-02 (1) > C8782T,T28144C (676) > A23403G,C26088T (677) > G9928T,G23403A (679) > C593T -USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 (1) > C8782T,T28144C (676) > G16381A,T17877C,G25500T,C25854T,G28878A,G29742A -England/BRIS-125347/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G7042T,G8861T -IND/763/2020|MT577009.1|20 (1) > C241T,C3037T,C14408T,A23403G (28) > C4809T -England/CAMB-75BD8/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C18060T,G28514T -USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C25665T,G28325T (47) > C15540T -USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C25665T,G28325T (47) > G16075T -USA/WI-UW-26/2020|MT706147.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G3871T (49) > A29797G -USA/IL-QDX-2568/2020|MW191367.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G3871T (49) > C19862T -USA/WI-UW-558/2020|MT750137.1|20-06-25 (1) > C241T,C3037T,C14408T,A23403G (28) > A696C -EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1997T -Scotland/GCVR-172150/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C1545T,C22879A -England/BRIS-122C4F/2020|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > A11782G,G22203T,G27754T -USA/RI-CDC-0556/2020|MT304488.1|20-03-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C27684T -Switzerland/100198/2020|LR884312.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > G28881A -USA/WI-UW-37/2020|MT706158.1|20-03-22 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G11417T -Scotland/GCVR-173C30/2020|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G3831A,T7441C -England/ALDP-4A2A77/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > C7834T,C16997T,G25429T -England/BRIS-12468B/2020|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > C1909T,T27576C -England/NORW-E9DF7/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C2940T,C7765T -Wales/PHWC-27B20/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > T22435C -Wales/PHWC-2624A/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C27476T -Wales/PHWC-29E43/2020|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G9220A,T26512C -England/LOND-D3534/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > C25350T,T27280C -England/LIVE-A63E5/2020|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G680T,T17835C -Wales/PHWC-27461/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > C5506T,G14241T,C19374T -AUS/VIC1056/2020|MT451723.1|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > T7438C,A21944T,C29353T -England/LIVE-A65EF/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G10523C,G14580T -IND/GBRC209a/2020|MT664202.1|20-06-11 (1) > C241T,C3037T,C14408T,A23403G (28) > A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,G25563T,C29750T -Scotland/CVR30/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C1884T,T26497C -IND/GBRC99/2020|MT509504.1|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G4866T,C14425A,A21511G -AUS/VIC1239/2020|MT451821.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C6723T,T26094C,G28476T -IND/GBRC128/2020|MT539172.1|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > C4084T,G5572T -POL/PL_MCB_75/2020|MW273857.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > A544G,C17104T -Netherlands/NA_302/2020|LR878041.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A3058G,G20275A -USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G2282A,T9742C,C17639T,G20160T -Scotland/CVR129/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C23422T,T23849C,C29686T (423) > G29227A -Scotland/CVR52/2020|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > C23422T,T23849C,C29686T (423) > C25667T -Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > T241C -England/ALDP-BCA4B0/2020|20-11-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T -USA/WA-S1222/2020|MT821613.1|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > C186T,C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T -England/CAMB-76515/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C16289T,T25429G -England/LEED-2A8D10/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C13730T,C25916T -Scotland/CVR2381/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > C1848T -Scotland/CVR2197/2020|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G17278T,C19610T,T26906C,G29688T,G29757T (38) > G21776T -Scotland/CVR1519/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A6441G,A28841G -England/NORW-E8C37/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > C3602T,C11460T,A24232G -Wales/PHWC-3122E/2020|20-04-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1589A,G29474T (43) > A22457G -Wales/PHWC-1645EC/2020|20-05-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G1589A,G29474T (43) > A11438G -England/PHEC-127E8/2020|20-03-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > G21538T -England/MILK-9A8AB8/2020|20-08-31 (1) > C241T,C3037T,C14408T,A23403G (28) > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (269) > C222T -IND/GBRC174b/2020|MT607610.1|20-06-05 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C3634T,C22444T,C28854T -France/10036BG/2020|MT470106.1|20-03 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G28202A -POL/PL_MCB_97/2020|MW273879.1|20-05-10 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C2570T,A7031G,G13617T -Scotland/CVR3629/2020|20-05-24 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > G18380T -Scotland/QEUH-5456F9/2020|20-05-13 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G19542T,G20679A,T27576G (348) > C6606T -England/QEUH-990752/2020|20-08-29 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T -AUS/VIC38/2020|MT450953.1|20-03-11 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C15277T (350) > C10350T -IHUCOVID-0133|LR794459.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > C15277T (350) > C8394T -Switzerland/240009/2020|LR880588.1|20-08-07 (1) > C241T,C3037T,C14408T,A23403G (28) > C15324T (341) > G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A -USA/MN67-MDH67/2020|MT911566.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > G11596T (355) > -Netherlands/NA_292/2020|LR878032.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > G11596T (355) > G20568A -Switzerland/101166/2020|LR824397.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C22323T -Switzerland/100154/2020|LR824311.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C8293T,T18488C,T24739C (356) > C17118T -PER/covper091/2020|MW030227.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > C15277T,A21917G -England/CAMB-737D6/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > A26530G (354) > A2775G,G4255T,C6861T,C13568T,A20355G -Wales/PHWC-16930B/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > C6990T (398) > C3264T,C29200T -USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A187G (409) > A10770G,C16017T,T27212C,G27561T -England/BRIS-128DCE/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > A187G (409) > C12213T,C19066A -Scotland/CVR2435/2020|20-04-14 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C4540T,C28657T (685) > C15274T,C25714T,C26029A -AUS/VIC995/2020|MT451680.1|20-03-31 (1) > C8782T,T28144C (676) > T9477A,C14805T,G25979T (682) > C28863T (683) > C4540T,C28657T (685) > G17632A,C28311T -England/CAMB-1AC7D3/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A10874G,C25916T,T26677C (35) > A13863G -England/LEED-2A87C7/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G3230A,C23453T -USA/CA-CZB-1434/2020|MT628140.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24381T (62) > -USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24381T (62) > C23718T -USA/VA-DCLS-0676/2020|MT911804.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24442T (63) > -USA/MI-QDX-476/2020|MW064508.1|20-03-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C24442T (63) > -USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T20037C,G28073T -England/CAMB-7A7DF/2020|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > G8578A -Netherlands/NA_18/2020|LR878352.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T1059C,C1594T,C11109T (67) > C23506T -USA/VA-DCLS-1557/2020|MW208010.1|20-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > C25207T -USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18555T,C28892T (68) > A6035G -Wales/PHWC-2E0A2/2020|20-04-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C18568T,G24368T,C24621T -USA/WA-S2746/2020|MT947577.1|20-07-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T -USA/UT-05590/2020|MW084605.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A2151G,G19542T,C23551T,C28821A -Netherlands/NA_588/2020|LR883860.1|20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G18281A,A20742G,A20755C,G25784T -USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A12820G,C16762T,A17637G,C20762T,C28887T -USA/CA-CZB-1793/2020|MT750334.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C379A,A20503G -USA/WI-UW-1119/2020|MT929068.1|20-07-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A19899T,A21464G -England/CAMB-7771E/2020|20-03-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4586T -England/CAMB-7DC91/2020|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8788C,G26951A (123) > C4321T -USA/TX-DSHS-1232/2020|MW309089.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7528T,G8213A -USA/MD-MDH-0071/2020|MT827237.1|20-05-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C775T,C23683T,C27923T,G28975T -USA/WA-QDX-235/2020|MT806806.1|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A12557C,A23534T -USA/VA-DCLS-0426/2020|MT679166.1|20-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1917T (127) > C8327T -USA/VA-DCLS-0187/2020|MT450889.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1917T (127) > G29431T -USA/UT-QDX-2224/2020|MW191025.1|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C23191T,A25910C -USA/MN-MDH-1596/2020|MT997714.1|20-05-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T9070C,C20325T -USA/MA_MGH_00458/2020|MT520347.1|20-04-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G3892T (146) > G26787A -USA/MA_MGH_00445/2020|MT520273.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G3892T (146) > G20062T -USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C16428T,C20555T,C21772T -USA/MN-MDH-1464/2020|MT919997.1|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C3044T,G25523T,T27869C -USA/MD-MDH-0129/2020|MT937319.1|20-07-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > C13761T -USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C66T,C17069T,C26801T (152) > A26864T -USA/WA-UW-6327/2020|MT412324.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5240G,C26625T -USA/MI-QDX-371/2020|MW064412.1|20-03-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27847T (154) > A2948G -USA/MI-QDX-298/2020|MW064340.1|20-03-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27847T (154) > C6628T -USA/TX-QDX-261/2020|MT806804.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T8041C,C18029T,G22225T -USA/TX-DSHS-0675/2020|MW093567.1|20-07-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C335T,G526C,T16425G -USA/WI-UW-994/2020|MT846680.1|20-07-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T6905G,C13994T,C17518T,G21724T,G23120T,C25667T -USA/WI-UW-522/2020|MT750102.1|20-06-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5310T,C12294T,C25511T -USA/DC-HP00089/2020|MT509482.1|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9510T,C11919T -USA/IL-UW-1065/2020|MT929017.1|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C5183T,G28878T -USA/MI-QDX-620/2020|MW064645.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25976A (164) > G3091A -USA/MI-QDX-595/2020|MW064630.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25976A (164) > C18981T -England/BRIS-12D9F2/2020|20-05-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A20262G -England/BRIS-12B156/2020|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C7851T,C20233T (165) > A13707G -USA/WA-QDX-2548/2020|MW191307.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C25572T,G29747T -USA/COVID20-1144/2020|MW067817.1|20-07-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G2286A,A4197G,G7954T,A10552G,T25577G,A28715T -USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G26730T,G27955A,C28854T -USA/CA-QDX-2032/2020|MW190749.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1887T (172) > G533A -USA/CA-QDX-2576/2020|MW191310.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1887T (172) > A27979T -Wales/PHWC-26B12/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C829T,G28371T -USA/NY-CDC-SURV0162NYC/2020|MT434788.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T3037C,C10851T -USA/TX-DSHS-1428/2020|MW326536.1|20-06-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1734T,G12160T,C23664T -USA/TX-DSHS-0051/2020|MW039116.1|20-05-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G1495T,T7332C,T7831A,G28845T -Northern_Ireland/NIRE-1021DD/2020|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A6360G,G20709T -Scotland/EDB6052/2020|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G18213T,A18818G -England/CAMB-7FBCF/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A12556G -England/CAMB-784BC/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C9286T,G28899C (184) > A13852G -B90|LR898037.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C6406T,G18972A,A21360C -ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > G7295T,C28290T -USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G26233T,C27881T -USA/TX-CDC-3009/2020|MT512440.1|20-03-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T9708C,C10712T -England/BRIS-130015/2020|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C6361T,C14786T,G20578T -USA/MA_MGH_00136/2020|MT520439.1|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G10631T (204) > -USA/MA_MGH_00486/2020|MT520279.1|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G10631T (204) > G8131T -Wales/PHWC-2AF12/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C19884T,C26447A -321398|LR962930.1|20-10-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > C22208T -England/QEUH-B8053B/2020|20-11-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T (207) > G22225T -IHUCOVID-0428|LR794641.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > C6401T,T10480C,C13458T,C20946T -USA/WA-S3458/2020|MW494078.1|20-12-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T2300C,C3535T,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G -hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > -Switzerland/100363/2020|LR884411.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > T17838C,G26450T (210) > -USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C27416T,G28086T -USA/UT-03892/2020|MT711875.1|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C683T,A6512C -USA/CA-CZB-1414/2020|MT628125.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > G10793T,C29311T -USA/WA-S1281/2020|MT821642.1|20-05-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A2161G,G11417T,C16376T -USA/WI-UW-288/2020|MT706396.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C9195T,T15354C,C21855T -USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C1288T,G1298A,G25445T,G28851T,G29254T -England/ALDP-5D3DEC/2020|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1154G,G29474T -USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A1096G,C1420T,G14874T -USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > -USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > A25524G,C26801T,G29449T (265) > C10741T -USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C9967T,A11246T,A23949G,C29013T -England/QEUH-9C7EA8/2020|20-09-11 (1) > C241T,C3037T,C14408T,A23403G (28) > C3602T,G4442T,C6525T,C6941T,C15324T,A16044T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T (269) > G2407T,T2924C,G11761T -Scotland/EDB3341/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G27987T -USA/CA-CZB-11521/2020|MW276549.1|20-07-18 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C4633T,T14643C,C22482T,G27506T -England/LOND-D5444/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7798T (284) > C12789T -Scotland/CVR3238/2020|20-04-26 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G7798T (284) > G22992T -Scotland/EDB3662/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > T5507A,A19855G -USA/CA-CDC-4704/2020|MW001903.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C4596A,G19086T,C23114T -England/OXON-B1781/2020|20-05-04 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C1714T,C27213T -USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > C24258T -USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > A8884G,C16694A,C26177T (297) > -USA/WI-UW-1288/2020|MW035458.1|20-09-02 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C884T,G2258A,A6441G,C8140T,A9204G,C29445T -England/CAMC-94C02D/2020|20-07-15 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > C27371T -England/MILK-95DBDD/2020|20-06-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T (303) > A20667G -England/CAMB-79ECC/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > A10323G,G21778A -England/PHEC-152C73/2020|20-11-16 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C3426T,C19862T (362) > C21682T -Scotland/QEUH-9D11C0/2020|20-09-16 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > T4195A,C10977T,C24334T,G25049T,G25062T,C26151T,C28657T,C29366T -Switzerland/270068/2020|LR882987.1|20-09-02 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C13671T,C14805T,G17058T,G17278T,A20284T,T20285C,A27755T -GRC/202_32984/2020|MT459870.1|20-03-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > -GRC/208_33922/2020|MT459876.1|20-03-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C28887T (428) > -England/PHEC-1B7C1/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C18115T -Scotland/CVR3919/2020|20-06-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A22330G,T27264G -England/ALDP-9558ED/2020|20-06-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1800A,G2398A,C23854T,G25972A,G27842T -England/BRIS-12F78D/2020|20-03-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T11638C,C25584A -England/NORT-282972/2020|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > -England/CAMB-80554/2020|20-04-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C17678T (452) > T3745C -England/CAMC-94328A/2020|20-07-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > -England/CAMC-9424A3/2020|20-07-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T (456) > -USA/MA-QDX-3180/2021|MW505247.1|21-01-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T -USA/CA-CZB-1885/2020|MT750387.1|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T4711C,A6709G,C17125T -USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C673T -USA/CA-CZB-13945/2020|MW565647.1|20-06-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G443A,T6579C,G28378T -England/OXON-AEBC7/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9430T,G24781T,G29706T -Wales/PHWC-164485/2020|20-05-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C9438T,A16653G,G29777T -England/ALDP-51F142/2020|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G922T,C6541T,C19983T -England/ALDP-49E391/2020|20-05-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3170T,C6336T,T26260G,C27673T -Northern_Ireland/NIRE-10677D/2020|20-05-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C10376T,G18148A,C26208T -England/MILK-9705F4/2020|20-08-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > C15045T -England/ALDP-9B6440/2020|20-08-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A27932G,G29705T (475) > -Scotland/EDB6515/2020|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > -England/ALDP-6839B9/2020|20-07-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2576T,C5175T,C6401T,A27691T -USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C18652T,T22843C -England/NOTT-111117/2020|20-05-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2526C,C10440T,T25316C -England/ALDP-68EFBC/2020|20-07-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T13827C,G18756T,C23430T -England/PHEC-16F19/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > C4570A -England/GSTT-265D4DF/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G3230A,T24076A (495) > -England/NORT-283BE4/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C24026T -DK/KL14_Farm1/2020|MT919536.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C15656T,C25936T -England/BRIS-123EDF/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C2509T -England/BRIS-123F09/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1630C,C27679T (511) > C9118T -USA/WA-UW-6243/2020|MT412316.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C3096T -England/LOND-D53CF/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G621A -USA/WA-S2724/2020|MT947562.1|20-07-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > -USA/WA-S2728/2020|MT947566.1|20-07-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T (551) > -Scotland/CVR3185/2020|20-04-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C16946T,G26615T -England/BRIS-127A40/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2659T,C17249T,G17722T -England/EXET-136ED9/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G2164A,C8733T -England/ALDP-907D09/2020|20-06-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > C20320T -England/MILK-85E3E4/2020|20-07-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G569A,C5482T,G17944T,C18747T,A22182G (564) > G2144T -England/MILK-95862C/2020|20-06-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C3622T,C25844T,C28087T,G28557T -England/PHEC-219E0/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > T23227C -England/LEED-2AA59E/2020|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C28969T -England/ALDP-95A754/2020|20-06-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > T20764C -England/ALDP-95CEA8/2020|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C (570) > C14931T -Wales/PHWC-162E7A/2020|20-05-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C5497T,C6582T -England/ALDP-71D072/2020|20-07-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21637T,T26156C,A28169G -England/ALDP-954C6A/2020|20-06-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G27857T -England/PHEC-20B81/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C20474T -England/MILK-9570D4/2020|20-06-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3163C,C7768T -DV_IZSPB_236_S50|LR992121.1|20-08-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3737T,A3959G,C11758T,G12769T,G25785T,G29402T -England/ALDP-9D8FFC/2020|20-09-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G1210T,G9802T,G12067T,T20613C -England/NORT-28B1EA/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > C27741T -England/NORT-28B28D/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3177T,G22093A (598) > A8734G -England/LIVE-9BC33/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C11620T -England/ALDP-5A2A49/2020|20-06-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3154C,C18981T -USA/WA-S1434/2020|MT821707.1|20-05-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C8802T -USA/WA-S2573/2020|MT831840.1|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G18803T,A22606G -England/ALDP-9BEB16/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T,C2445T,C9430T,G14428T,T15156C,C20368T,C26527T,C29149T,G29239A -Scotland/CVR1557/2020|20-04-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G23401T -Wales/PHWC-34610/2020|20-04-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > G16014A -BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > C19273T -England/CAMB-82E1B/2020|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8374T -SAU/KFSHRC44/2020|MT820480.1|20-04-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > -SAU/KAIMRC67/2020|MT820487.1|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A11869G,T27484C (628) > G29422T -Scotland/EDB300/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C2399T,C15240T -England/CAMB-1AA438/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T4149C,C12525T,G25599T -England/MILK-9C4087/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T1543A,C1938T,T4369C,T22020C,C27911T -England/PHEC-13ADF/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T15978C,G24794T -USA/CA-CZB-2184/2020|MW035923.1|20-05-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C21205T,G21255C,G28960T -Scotland/QEUH-94375E/2020|20-08-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5554T,G19891T,C22938A,C24034T,G25249T,G25785T,G26152T,C27532T,G28321T,C29614T -England/CAMB-7C12A/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > -England/CAMB-83348/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T3615C,G22256T,C23802T,A27403T,C27741T (641) > -USA/MS-CDC-6546/2020|MW279423.1|20-08-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > G1589T -USA/TX-DSHS-1780/2020|MW425014.1|20-07-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G596T,T18231C (644) > T3127C -ZW-6983|LR963462.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > C10341T -ZW-6978|LR963455.1|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G5950T,C19164T,A21137G,T27447C,T29661C (648) > A13833G -USA/GA-CDC-LC0013501/2021|MW643935.1|21-02-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A3852T,C3961T,G7798T,C9891T,C10116T,C21846T,G23012A,T23287C,C23604A,C25276A,T26767C,C28720T -Netherlands/NA_359/2020|LR883961.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C7095T,C13502T,A16179G -England/CAMB-1AE7FF/2020|20-04-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G4207T,A4208C,C6033T,G11842T -Scotland/EDB2049/2020|20-04-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A10874G,C25916T,T26677C (35) > G25440A,G29745T (36) > T25916C -Scotland/EDB2100/2020|20-04-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25429T (31) > A10874G,C25916T,T26677C (35) > G25440A,G29745T (36) > -CHL/Santiago-PUC_MVL_0011/2020|MW365225.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > G1319A,G2945A,C10156T,T17208C -England/CAMB-83FBD/2020|20-04-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A3103C,C5893T,G24368T,A28117T (72) > -England/CAMB-1AD004/2020|20-04-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > A3103C,C5893T,G24368T,A28117T (72) > A28356G -USA/NY-QDX-1993/2020|MW190794.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G28376T -USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > T29128C -USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G26020T (89) > C4012T -USA/MN-MDH-1583/2020|MT997701.1|20-05-28 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > C8109T -USA/MN-MDH-1585/2020|MT997703.1|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > G1186A,T4033C,C8986T,C25413T,C28674T,G28857T (90) > T12925C -USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C13252T -KOR/YS006/2020|MW345824.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > C26261T -KOR/YS008/2020|MW345825.1|20-06-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C16650T,A20675T,G29179T,G29779T (103) > -USA/AK-PHL660/2020|MW173157.1|20-06-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > A16872C -USA/MN-QDX-981/2020|MW065078.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C28833T -USA/CA-QDX-2685/2020|MW191430.1|20-03-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C9967T,G17590T -USA/MN-QDX-1328/2020|MW065415.1|20-03-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C9693T -USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G17808T (117) > C15352T -USA/UT-00495/2020|MT444543.1|20-04-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > G27717A -USA/UT-00353/2020|MT444564.1|20-03-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C24378T (118) > T11131A -USA/IL-UW-1064/2020|MT929016.1|20-07-26 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > G4520T,A6442G,T6934C,C12374T,C14786T,T15624C,C25904T,C28099T,C28932T -Scotland/EDB2451/2020|20-04-23 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C10582T (130) > C1076T,T10963A -Switzerland/240029/2020|LR880608.1|20-08-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C10582T (130) > C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,T27622C,G27632T,C27804T,C28830A,G29402T,G29779T -England/RAND-12B3F28/2021|21-02-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T (134) > -England/RAND-12B3CF4/2021|21-02-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T,C28887T (134) > -England/LIVE-A91F7/2020|20-03-25 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > T13006C,C19186T,C25688T -England/BRIS-127AD7/2020|20-04-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C1968T,G3638T,G28808T,G29434C,G29705T -BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C2937T,C21310A -IND/GBRC-366a/2020|MT951170.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C26058T,G28851T -SAU/596/2020|MT755893.1|20-02-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > A23503G -England/TFCI-26FA9B7/2020|20-12-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > -England/MILK-B94ACC/2020|20-11-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T (243) > C15237T -Scotland/EDB5108/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C2113T,C7765T,C17690T,T24923C -USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T (286) > C16362T -USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,G19969A,C22120T,G28086T (286) > G25775T -USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C28854T (277) > G208T,G23522A,A25747C -England/QEUH-963433/2020|20-08-10 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > C2706T,C5339T,C25731T,C28833T -England/MILK-BB0022/2020|20-11-18 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C3426T,C19862T (362) > C11050A (363) > -England/MILK-BB0031/2020|20-11-18 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C3426T,C19862T (362) > C11050A (363) > -England/PHEC-14E15D/2020|20-12-09 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > C20178T -England/PHEC-149635/2020|20-10-28 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G (380) > -England/ALDP-9E75E9/2020|20-09-25 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > A408G,G2764T,C22088T,C29686T -England/ALDP-A68CF9/2020|20-10-12 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > G23311C (386) > G6476T,C10626T -England/MILK-9F1898/2020|20-09-25 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > G23311C (386) > C5239T,G25440T,C27752T -Wales/PHWC-4815AA/2020|20-10-13 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C12049T,G21800T,A22053C,G22346T -England/QEUH-7A4BBB/2020|20-07-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C2511T,G3242A,G8120C,C21646T,A24205T,G28083T -USA/WA-S1922/2020|MT831459.1|20-06-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G242T,C12528A,C18086T -USA/WA-S1775/2020|MT834200.1|20-06-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G13513A,C28256T,C29784T -England/ALDP-B82A0D/2020|20-11-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C4456T,C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T -England/BRIS-12A70A/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6573T,C25528T (446) > C21077T -England/CAMB-77F61/2020|20-04-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C6573T,C25528T (446) > G22299A -England/NORW-EE34B/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > G18315A,C24904T,T25088G -Northern_Ireland/NIRE-FBB52/2020|20-04-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T,C19366T (498) > C26270T -Northern_Ireland/NIRE-FAC7E/2020|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C1420T,C19366T (498) > C6114T -England/CAMB-81070/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > C4698T -Scotland/CVR41/2020|20-03-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3373A (513) > C823T -England/QEUH-96E605/2020|20-08-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2841T,G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G -USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > A11348G,G28690T -USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C823T,A11023G -Japan/TKYE622411_2020/2020|LC593808.1|20-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C8917T,C18167T,G21518T,G28975T,G29773T -England/MILK-A18C8F/2020|20-10-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T -Wales/PHWC-30957/2020|20-04-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T11654C,G22627A,G28628T -LC573289.2|20-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G2305T,G25563C,G28178T -TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > C2509T,G5015A,C14724T,G24262T,G27703T -England/CAMB-74D5B/2020|20-03-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > -England/BRIS-125D67/2020|20-03-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > C6347T,G18859T -England/ALDP-94D8F7/2020|20-06-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > A9997C -England/NOTT-111BFB/2020|20-05-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21624T (566) > G1874T,C8683T,C28093T (569) > G26426A -England/MILK-8664D7/2020|20-07-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G26918T,T29464C (572) > C29733T -England/CAMC-A40F67/2020|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > G1590T,A11120G,A12529G -England/QEUH-9B6EAC/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > A29700G -England/NORT-2A4CAE/2020|20-09-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > C835T (586) > C27945T -Northern_Ireland/NIRE-FB369/2020|20-08-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25617T (583) > A6900G,G25456T -England/LEED-2AA394/2020|20-03-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G11230T,C20941T,G23587C -England/WSFT-25C13CB/2020|20-04-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > -England/PORT-2F5D9C/2020|20-06-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G21724T (589) > G17302T,C25046T (592) > A5277G -England/ALDP-5D52BE/2020|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > T13794G,T28494C -England/ALDP-4A2BFC/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A20826G,A23207G -England/ALDP-49F5B8/2020|20-05-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10265A (599) > A19650G,T21368C -USA/WA-S2598/2020|MT831859.1|20-06-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > C6445T,G16852T,G29254T -USA/WA-S820/2020|MT641503.1|20-04-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G16813A (609) > A5538T,G17261A,T25783C -Netherlands/NA_436/2020|LR883367.1|20-04-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > G29628T -Netherlands/Friesland_33/2020|LR883315.1|20-04-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19170T,G19509A (616) > C26313T (617) > C4824T -England/CAMC-B36516/2020|20-11-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C2918T -England/CAMC-B362D3/2020|20-11-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > G174T,G210T,C2453T (619) > C29311T -England/MILK-B3A284/2020|20-11-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > C27046T -England/CAMC-B365AD/2020|20-11-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T (618) > T8603C,A17615G,G25437T (620) > T19232C -AUS/VIC13094/2020|MW185501.1|20-07-31 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6662A -England/CAMC-947259/2020|20-07-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C19488T (625) > A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C -USA/COVID20-0537/2020|MT981422.1|20-06-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G12832T,G27915A (57) > C29503T -USA/COVID20-1129/2020|MW067826.1|20-07-10 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C8389T (54) > C601T,G12832T,G27915A (57) > A28165G -USA/VA-DCLS-1147/2020|MT992749.1|20-04 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > A20553G,G22487C -USA/NY-QDX-2365/2020|MW191144.1|20-03-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C28863T -USA/CA-CZB-2139/2020|MT750510.1|20-05-21 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C5540A,C19145T -USA/NC-QDX-174/2020|MT786825.1|20-04-27 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C10458T,C18693A,G26828T -England/MILK-6166F0/2020|20-07-05 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C11916T (86) > C18998T,G29540A (91) > C66A,C4455T,C7768T,A8773G,C17304T,T22912G,T24805C,C26270T -USA/WI-UW-1194/2020|MT981478.1|20-08-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C1059T (61) > C27964T (108) > C10319T,A18424G,C21304T,G25907T,C28472T,C28869T (109) > G9928T,C10377T -England/ALDP-955F15/2020|20-06-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C882T,C17746T,G19962T,G25793A,G28907T -England/ALDP-94EB75/2020|20-06-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C2416T (191) > G8371T (193) > C22477T (195) > C3811T,G22225A -England/SHEF-10B22B9/2020|20-04-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > T241C,G3482A,A8821G,C15752T,G24197T,T26066C -Scotland/QEUH-A9E7BD/2020|20-10-20 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > A3120C -Scotland/EDB7778/2020|20-09-16 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T (220) > C593T,T3118C,T10200C,A12547G,C21772T,C28854T (221) > C28045T -England/MILK-970CE0/2020|20-08-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C6312T,C12513T,G14122T,A20559G,C23127T,G26389T,T26876C,C28311T,A28900C -England/SHEF-10CC3AA/2020|20-12-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > A749G,C1420T,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C -England/MILK-566C5A/2020|20-06-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C11514T,C13168T,G24764T -England/CAMC-C2CDFC/2020|20-12-07 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > T3366C -England/MILK-CAA0EE/2020|20-12-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C2898T,C6681T,C7728T,G12191T,T16993C,G25311T (237) > C28411T -England/QEUH-96A29C/2020|20-08-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C15654T,C16915T,G21204T,T24202C,G28899T,G29692T -England/ALDP-9BE8B5/2020|20-09-09 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > T16242A,G28745A -Scotland/CVR4309/2020|20-09-14 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > C7471T -England/ALDP-9BECB9/2020|20-09-10 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1987G (376) > T14721C,C23029T,T25519G -England/MILK-9A9D09/2020|20-09-01 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1987G (376) > A1230G,G6344T -England/CAMC-AEA62E/2020|20-10-25 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > A1987G (376) > C66T,G10870T,A11781G,C18329T,C25614T -Wales/PHWC-260AA/2020|20-03-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > T7168C,G11801A -England/BRIS-185470D/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > -England/BRIS-12AF02/2020|20-05-01 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > G25552T (432) > A26332G,A28877T,G28878C (434) > G27670T -USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T (443) > C22264T -USA/MA-MGH-03951/2021|MW617773.1|21-01-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T19839C (429) > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T (443) > T27824C -USA/MD-MDH-0841/2021|MW621433.1|21-01-17 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G25088T (476) > T733C,C2749T,C3828T,A5648C,A6319G,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,T26149C,G28167A,C28512G,A28877T,G28878C -England/CAMB-72B44/2020|20-03-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > -England/CAMB-822D3/2020|20-04-12 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > T28110C (501) > -Switzerland/300433/2020|LR898634.1|20-09-29 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G2995T,T4871C,C6449T,C10252T,C19366T,G27382T,T27808C -SRB/NS19622-16-06/2020|MW327528.1|20-06-15 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G10097A,C23731T (499) > C4002T,C13536T (500) > G24794T -EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3373A (513) > C2706T,G9968T,G16647T,T23480G (514) > -EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C3373A (513) > C2706T,G9968T,G16647T,T23480G (514) > -Japan/TKYE627000_2020/2020|LC593811.1|20-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > T4346C,C7728T,C9286T,C10376T,C14708T,C28725T,G29692T -IND/GBRC455a/2020|MW600436.1|20-12-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > C313T (521) > G160T,T682C,C900T,G3259T,C4048T,C5700A,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T -BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C28969T -England/CAMC-947392/2020|20-07-18 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > G26918T,T29464C (572) > C7843T,G15438T,C25207T,T25949C,C28453T -AUS/VIC11646/2020|MW155572.1|20-07-22 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > A1163T (621) > T7540C,G16647T,G22992A,G23401A (623) > G6617T,C18555T,C22987T -England/CAMC-A65DDB/2020|20-10-11 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G2659T,G5008T,G19549T,C25349A,G25947C,G26062T -England/QEUH-9F3FDD/2020|20-09-24 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > T7292C,T8410C,C10833T,C11572T,C16293T,T23986C -England/QEUH-96A85E/2020|20-08-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > C7528T,T23986C,C29555T -HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > C14724T -HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > T1947C (224) > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T (228) > A6391G -England/PHEC-149F0D/2020|20-11-19 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C22444T,C28854T (223) > C1122T,T4057C,G6077T,A10323G,G13858T,G21724T,C27092T,C27434T,G28975T -England/MILK-A230C1/2020|20-10-03 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (240) > A2175G -England/QEUH-A76C07/2020|20-10-12 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > G21777A -England/MILK-AC7997/2020|20-10-21 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > C15480T (373) > C125T -Scotland/QEUH-9B75D3/2020|20-09-04 (1) > C241T,C3037T,C14408T,A23403G (28) > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T (361) > C27944T (366) > G204T (367) > C21614T (369) > G8179T,G29778T -USA/MA_MGH_00693/2020|MT520290.1|20-04-06 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > C25916T,T28360C,C29769T -CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 (1) > C241T,C3037T,C14408T,A23403G (28) > G28882A,G28883C (426) > G28881A (427) > T29148C (542) > G25793T,T27299C (543) > T25793G (544) > A2475G,C14805T -England/MILK-97356A/2020|20-08-14 (1) > C241T,C3037T,C14408T,A23403G (28) > G25563T (53) > C18877T (211) > C26735T (212) > C4543T,G5629T,G9526T,C11497T,G13993T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A (240) > C15720T -England/ALDP-A2FCA3/2020|20-10-05 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C (322) > T7919G,C20451T,G21770A,C24734T -England/MILK-A474DA/2020|20-10-06 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C (322) > C16394T,C22127T,G23876A,G25947T,C29274T (330) > A6659G,G25218T -England/QEUH-AA0035/2020|20-10-20 (1) > C241T,C3037T,C14408T,A23403G (28) > A20268G (275) > T7767C,C8047T,G12988T,G15598A,C17104T,G18028T,C22879A,T24910C,T26972C,C27800A,G29734C (322) > C16394T,C22127T,G23876A,G25947T,C29274T (330) > T8110C,G11417T +England/BRIS-1853249/2020|20-04-02 node_2:C24034T England/BRIS-1853249/2020|20-04-02:C29518T +NPL/61-TW/2020|MT072688.1|20-01-13 node_2:C24034T +Wales/PHWC-25B04/2020|20-03-24 node_3:C875T Wales/PHWC-25B04/2020|20-03-24:A20637G +Wales/LIVE-A6831/2020|20-03-16 node_3:C875T Wales/LIVE-A6831/2020|20-03-16:T14859C +Scotland/EDB354/2020|20-03-30 node_4:C7423T Scotland/EDB354/2020|20-03-30:A29780C +England/SHEF-BFF8B/2020|20-03-25 node_5:C20270T England/SHEF-BFF8B/2020|20-03-25:C1473T +England/SHEF-BFFC7/2020|20-03-25 node_8:T4949C England/SHEF-BFFC7/2020|20-03-25:G28027T +England/PHEC-1E01E/2020|20-04-03 node_8:T4949C England/PHEC-1E01E/2020|20-04-03:C22445T +DP0476/2020|LC571003.1|20-02-16 node_9:C29635T DP0476/2020|LC571003.1|20-02-16:C29592T +DP0191/2020|LC570980.1|20-02-15 node_9:C29635T DP0191/2020|LC570980.1|20-02-15:A3854G +USA/CA-CZB-1091/2020|MT460091.1|20-05-01 node_660:A14940G USA/CA-CZB-1091/2020|MT460091.1|20-05-01:C15024T +USA/CA-CZB-11876/2020|MW276506.1|20-04-08 node_660:A14940G USA/CA-CZB-11876/2020|MW276506.1|20-04-08:A26120G +USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24 node_662:T514C USA/CDC-CruiseA-18/2020|MT159716.2|20-02-24:C22033A +USA/CA-QDX-1986/2020|MW190732.1|20-03-18 node_663:A12557G,C24904T,A27359G USA/CA-QDX-1986/2020|MW190732.1|20-03-18:C11050T +USA/CA-CZB-1015/2020|MT438733.1|20-04-22 node_664:C25692T USA/CA-CZB-1015/2020|MT438733.1|20-04-22:T15867A +USA/CA-CZB-1051/2020|MT449644.1|20-04-06 node_666:C10277T USA/CA-CZB-1051/2020|MT449644.1|20-04-06:G7273A +USA/CA-QDX-33/2020|MT614459.1|20-03-15 node_674:C6312A,C13730T,C23929T,C28311T USA/CA-QDX-33/2020|MT614459.1|20-03-15:C66T +USA/DC-HP00063/2020|MT646075.1|20-03-13 node_674:C6312A,C13730T,C23929T,C28311T USA/DC-HP00063/2020|MT646075.1|20-03-13:C11455T +England/PHEC-1A601/2020|20-03-04 node_699:G1397A,T28688C,G29742T England/PHEC-1A601/2020|20-03-04:A19526G +England/ALDP-9EE3AC/2020|20-05-06 node_10:C14805T,G26144T node_19:C23707T England/ALDP-9EE3AC/2020|20-05-06:G20991T +England/CAMB-8042A/2020|20-04-10 node_10:C14805T,G26144T node_20:A2480G,C2558T England/CAMB-8042A/2020|20-04-10:A4015T +SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 node_10:C14805T,G26144T node_22:G5572T SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29:C28311T +England/LIVE-9D7D6/2020|20-04-15 node_667:G29711T node_668:C1218T,G27806T England/LIVE-9D7D6/2020|20-04-15:C27493T +USA/WI-UW-314/2020|MT706422.1|20-04-16 node_667:G29711T node_669:A4838G,C7420T,C14937T,C20148T USA/WI-UW-314/2020|MT706422.1|20-04-16:G25907T +Scotland/CVR780/2020|20-03-27 node_671:C28854T node_672:C12710T Scotland/CVR780/2020|20-03-27:C5997T +Japan/TKYE63557_2020/2020|LC581365.1|20-03 node_671:C28854T node_673:C11752T,C25665T,A27700G,T28854C,T28912C Japan/TKYE63557_2020/2020|LC581365.1|20-03:C26447T +MYS/188407/2020|MT372480.1|20-03-18 node_674:C6312A,C13730T,C23929T,C28311T node_675:C6310A,C19524T MYS/188407/2020|MT372480.1|20-03-18:T25473C +USA/FL-BPHL-0393/2020|MT757005.1|20-03-17 node_676:C8782T,T28144C node_682:T9477A,C14805T,G25979T +USA/COVID20-0008/2020|MT764174.1|20-03-10 node_676:C8782T,T28144C node_697:T490A,C3177T,C24034T,T26729C,G28077C USA/COVID20-0008/2020|MT764174.1|20-03-10:T18736C +USA/IL-CDC-IL2/2020|MT044257.1|20-01-28 node_676:C8782T,T28144C node_697:T490A,C3177T,C24034T,T26729C,G28077C +AUS/VIC1878/2020|MT745600.1|20-03-29 node_699:G1397A,T28688C,G29742T node_701:C1076T AUS/VIC1878/2020|MT745600.1|20-03-29:A28955T +England/SHEF-BFF21/2020|20-03-25 node_5:C20270T node_6:A29683T node_7:A18671G +Switzerland/100159/2020|LR884273.1|20-03-16 node_10:C14805T,G26144T node_11:T17247C node_12:C12400T Switzerland/100159/2020|LR884273.1|20-03-16:C16995T +England/LOND-126031F/2020|20-03-15 node_10:C14805T,G26144T node_11:T17247C node_12:C12400T England/LOND-126031F/2020|20-03-15:A20511G +USA/NY-QDX-1999/2020|MW190795.1|20-03-16 node_10:C14805T,G26144T node_11:T17247C node_13:C8078T USA/NY-QDX-1999/2020|MW190795.1|20-03-16:G10754A +USA/NY-QDX-1969/2020|MW190709.1|20-03-15 node_10:C14805T,G26144T node_11:T17247C node_13:C8078T +Scotland/CVR44/2020|20-03-13 node_10:C14805T,G26144T node_11:T17247C node_15:A1587G Scotland/CVR44/2020|20-03-13:G443A +Scotland/CVR207/2020|20-03-18 node_10:C14805T,G26144T node_11:T17247C node_16:C988T Scotland/CVR207/2020|20-03-18:G12832A +Spain/R11/2020|LR884126.1|20-03-06 node_676:C8782T,T28144C node_677:A23403G,C26088T node_680:C3037T,A20268G Spain/R11/2020|LR884126.1|20-03-06:T3037C +Spain/LP19_4952/2020|LR884066.1|20-03-07 node_676:C8782T,T28144C node_677:A23403G,C26088T node_680:C3037T,A20268G +Spain/R10_33/2020|LR884127.1|20-03-02 node_676:C8782T,T28144C node_682:T9477A,C14805T,G25979T node_683:C28863T Spain/R10_33/2020|LR884127.1|20-03-02:T25979G +Scotland/EDB5629/2020|20-03-24 node_676:C8782T,T28144C node_677:A23403G,C26088T node_678:G23403A node_679:G9928T Scotland/EDB5629/2020|20-03-24:G27870T +Scotland/EDB5040/2020|20-04-02 node_676:C8782T,T28144C node_677:A23403G,C26088T node_678:G23403A node_679:G9928T Scotland/EDB5040/2020|20-04-02:C593T +USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24 node_676:C8782T,T28144C node_689:G22468T,G28878A,G29742A node_690:T22468G node_692:G16381A,T17877C,G25500T USA/MI-MDHHS-SC20124/2020|MT439284.1|20-03-24:C25854T +England/BRIS-125347/2020|20-03-27 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_29:G7042T,G8861T +IND/763/2020|MT577009.1|20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_30:C4809T +England/CAMB-75BD8/2020|20-03-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_45:G28514T England/CAMB-75BD8/2020|20-03-29:C18060T +USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_47:C25665T,G28325T USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29:C15540T +USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_47:C25665T,G28325T USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29:G16075T +USA/WI-UW-26/2020|MT706147.1|20-03-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_49:G3871T USA/WI-UW-26/2020|MT706147.1|20-03-24:A29797G +USA/IL-QDX-2568/2020|MW191367.1|20-03-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_49:G3871T USA/IL-QDX-2568/2020|MW191367.1|20-03-14:C19862T +USA/WI-UW-558/2020|MT750137.1|20-06-25 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_51:A696C +EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_53:G25563T EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02:C1997T +Scotland/GCVR-172150/2020|20-03-30 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_273:C1545T,C22879A +England/BRIS-122C4F/2020|20-04-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_274:A11782G,G22203T England/BRIS-122C4F/2020|20-04-02:G27754T +USA/RI-CDC-0556/2020|MT304488.1|20-03-01 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G USA/RI-CDC-0556/2020|MT304488.1|20-03-01:C27684T +Switzerland/100198/2020|LR884312.1|20-03-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_275:A20268G Switzerland/100198/2020|LR884312.1|20-03-17:G28881A +USA/WI-UW-37/2020|MT706158.1|20-03-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T USA/WI-UW-37/2020|MT706158.1|20-03-22:G11417T +Scotland/GCVR-173C30/2020|20-04-07 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_359:G3831A Scotland/GCVR-173C30/2020|20-04-07:T7441C +England/ALDP-4A2A77/2020|20-05-22 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_395:C7834T,C16997T,G25429T +England/BRIS-12468B/2020|20-04-09 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_396:C1909T England/BRIS-12468B/2020|20-04-09:T27576C +England/NORW-E9DF7/2020|20-05-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_397:C2940T England/NORW-E9DF7/2020|20-05-02:C7765T +Wales/PHWC-27B20/2020|20-03-30 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_398:C6990T Wales/PHWC-27B20/2020|20-03-30:T22435C +Wales/PHWC-2624A/2020|20-03-27 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_398:C6990T Wales/PHWC-2624A/2020|20-03-27:C27476T +Wales/PHWC-29E43/2020|20-04-04 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_401:T26512C Wales/PHWC-29E43/2020|20-04-04:G9220A +England/LOND-D3534/2020|20-03-27 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_402:C25350T England/LOND-D3534/2020|20-03-27:T27280C +England/LIVE-A63E5/2020|20-03-18 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_403:T17835C England/LIVE-A63E5/2020|20-03-18:G680T +Wales/PHWC-27461/2020|20-03-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_407:C5506T,G14241T Wales/PHWC-27461/2020|20-03-31:C19374T +AUS/VIC1056/2020|MT451723.1|20-04-03 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_408:T7438C,C29353T AUS/VIC1056/2020|MT451723.1|20-04-03:A21944T +England/LIVE-A65EF/2020|20-03-19 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_412:G14580T England/LIVE-A65EF/2020|20-03-19:G10523C +IND/GBRC209a/2020|MT664202.1|20-06-11 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_413:A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T IND/GBRC209a/2020|MT664202.1|20-06-11:G25563T +Scotland/CVR30/2020|20-03-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_414:C1884T,T26497C +IND/GBRC99/2020|MT509504.1|20-05-06 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_415:G4866T,C14425A IND/GBRC99/2020|MT509504.1|20-05-06:A21511G +AUS/VIC1239/2020|MT451821.1|20-04-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_416:C6723T,T26094C AUS/VIC1239/2020|MT451821.1|20-04-02:G28476T +IND/GBRC128/2020|MT539172.1|20-05-02 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_417:C4084T IND/GBRC128/2020|MT539172.1|20-05-02:G5572T +POL/PL_MCB_75/2020|MW273857.1|20-04-16 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_418:A544G,C17104T +Netherlands/NA_302/2020|LR878041.1|20-04-01 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_419:G20275A Netherlands/NA_302/2020|LR878041.1|20-04-01:A3058G +USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_421:G2282A,T9742C,C17639T USA/TX-DSHS-0975/2020|MW217385.1|20-06-16:G20160T +Scotland/CVR129/2020|20-03-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_423:C23422T,T23849C,C29686T Scotland/CVR129/2020|20-03-13:G29227A +Scotland/CVR52/2020|20-03-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_423:C23422T,T23849C,C29686T Scotland/CVR52/2020|20-03-14:C25667T +Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_426:G28882A,G28883C Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20:T241C +England/ALDP-BCA4B0/2020|20-11-23 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_653:G1599T,C4965T,A6466G,A6616G,A7319G,G7954T,C12651T,G14371A,G21624T,G23587T,G28914T +USA/WA-S1222/2020|MT821613.1|20-05-08 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_654:C15933T,G16968T,T19839C,G28881A,G28882A,G28883C,C29784T USA/WA-S1222/2020|MT821613.1|20-05-08:C186T +England/CAMB-76515/2020|20-03-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_32:C16289T England/CAMB-76515/2020|20-03-29:T25429G +England/LEED-2A8D10/2020|20-03-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_33:C13730T England/LEED-2A8D10/2020|20-03-31:C25916T +Scotland/CVR2381/2020|20-04-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_38:G17278T,C19610T,T26906C,G29688T,G29757T Scotland/CVR2381/2020|20-04-13:C1848T +Scotland/CVR2197/2020|20-04-11 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_38:G17278T,C19610T,T26906C,G29688T,G29757T Scotland/CVR2197/2020|20-04-11:G21776T +Scotland/CVR1519/2020|20-04-03 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_39:A28841G Scotland/CVR1519/2020|20-04-03:A6441G +England/NORW-E8C37/2020|20-04-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_42:C3602T,A24232G England/NORW-E8C37/2020|20-04-13:C11460T +Wales/PHWC-3122E/2020|20-04-10 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_43:G1589A,G29474T Wales/PHWC-3122E/2020|20-04-10:A22457G +Wales/PHWC-1645EC/2020|20-05-10 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_43:G1589A,G29474T Wales/PHWC-1645EC/2020|20-05-10:A11438G +England/PHEC-127E8/2020|20-03-28 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_31:G25429T node_44:G21538T +England/MILK-9A8AB8/2020|20-08-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_268:C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T node_269:G4442T,C6525T,A16044T England/MILK-9A8AB8/2020|20-08-31:C222T +IND/GBRC174b/2020|MT607610.1|20-06-05 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_344:C3634T,C28854T IND/GBRC174b/2020|MT607610.1|20-06-05:C22444T +France/10036BG/2020|MT470106.1|20-03 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_345:G28202A +POL/PL_MCB_97/2020|MW273879.1|20-05-10 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_347:A7031G,G13617T POL/PL_MCB_97/2020|MW273879.1|20-05-10:C2570T +Scotland/CVR3629/2020|20-05-24 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_348:G19542T,G20679A,T27576G Scotland/CVR3629/2020|20-05-24:G18380T +Scotland/QEUH-5456F9/2020|20-05-13 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_348:G19542T,G20679A,T27576G Scotland/QEUH-5456F9/2020|20-05-13:C6606T +England/QEUH-990752/2020|20-08-29 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_349:C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T +AUS/VIC38/2020|MT450953.1|20-03-11 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_350:C15277T AUS/VIC38/2020|MT450953.1|20-03-11:C10350T +IHUCOVID-0133|LR794459.1|? node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_350:C15277T IHUCOVID-0133|LR794459.1|?:C8394T +Switzerland/240009/2020|LR880588.1|20-08-07 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_341:C15324T node_353:G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A +USA/MN67-MDH67/2020|MT911566.1|20-03-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_354:A26530G node_355:G11596T +Netherlands/NA_292/2020|LR878032.1|20-04-01 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_354:A26530G node_355:G11596T Netherlands/NA_292/2020|LR878032.1|20-04-01:G20568A +Switzerland/101166/2020|LR824397.1|20-03-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_354:A26530G node_356:C8293T,T18488C,T24739C Switzerland/101166/2020|LR824397.1|20-03-31:C22323T +Switzerland/100154/2020|LR824311.1|20-03-16 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_354:A26530G node_356:C8293T,T18488C,T24739C Switzerland/100154/2020|LR824311.1|20-03-16:C17118T +PER/covper091/2020|MW030227.1|20-03-17 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_354:A26530G node_357:C15277T,A21917G +England/CAMB-737D6/2020|20-03-31 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_354:A26530G node_358:A2775G,G4255T,C13568T,A20355G England/CAMB-737D6/2020|20-03-31:C6861T +Wales/PHWC-16930B/2020|20-04-01 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_398:C6990T node_399:C29200T Wales/PHWC-16930B/2020|20-04-01:C3264T +USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_409:A187G node_410:C16017T,T27212C,G27561T USA/TX-DSHS-1397/2020|MW309099.1|20-05-20:A10770G +England/BRIS-128DCE/2020|20-04-14 node_25:C241T node_26:C14408T node_27:A23403G node_28:C3037T node_409:A187G node_411:C19066A England/BRIS-128DCE/2020|20-04-14:C12213T +Scotland/CVR2435/2020|20-04-14 node_676:C8782T,T28144C node_682:T9477A,C14805T,G25979T node_683:C28863T node_684:C28657T node_685:C4540T node_686:C25714T,C26029A Scotland/CVR2435/2020|20-04-14:C15274T +AUS/VIC995/2020|MT451680.1|20-03-31 node_676:C8782T,T28144C node_682:T9477A,C14805T,G25979T node_683:C28863T node_684:C28657T node_685:C4540T node_687:C28311T AUS/VIC995/2020|MT451680.1|20-03-31:G17632A 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