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comparison test-data/out_single.log @ 0:9c5a5990ee28 draft

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planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
author iuc
date Tue, 29 Aug 2017 17:36:37 -0400
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children 1dcce674b282
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-1:000000000000 0:9c5a5990ee28
1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpREDhtd/files/003/dataset_3766.dat --stdout /tmp/tmpREDhtd/files/003/dataset_3767.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpREDhtd/files/003/dataset_3768.dat
2 # job started at Tue Aug 29 14:20:26 2017 on gaius -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393
3 # pid: 21338, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64
4 # blacklist : None
5 # compresslevel : 6
6 # error_correct_cell : False
7 # extract_method : string
8 # filter_cell_barcode : None
9 # filter_cell_barcodes : False
10 # log2stderr : False
11 # loglevel : 1
12 # pattern : XXXNNN
13 # pattern2 : None
14 # prime3 : True
15 # quality_encoding : phred33
16 # quality_filter_mask : None
17 # quality_filter_threshold : 10
18 # random_seed : None
19 # read2_in : None
20 # read2_out : False
21 # read2_stdout : False
22 # reads_subset : None
23 # reconcile : False
24 # short_help : None
25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
26 # stdin : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3766.dat' mode='r' encoding='UTF-8'>
27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3768.dat' mode='a' encoding='UTF-8'>
28 # stdout : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3767.dat' mode='w' encoding='UTF-8'>
29 # timeit_file : None
30 # timeit_header : None
31 # timeit_name : all
32 # whitelist : None
33 2017-08-29 14:20:26,493 INFO Starting barcode extraction
34 2017-08-29 14:20:26,495 INFO Input Reads: 100
35 2017-08-29 14:20:26,495 INFO Reads output: 72
36 2017-08-29 14:20:26,495 INFO filtered: umi quality: 28
37 # job finished in 0 seconds at Tue Aug 29 14:20:26 2017 -- 0.75 0.02 0.00 0.00 -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393