Mercurial > repos > iuc > umi_tools_extract
diff umi-tools_extract.xml @ 19:61fa2b1bed1c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit bc1b362f6783d3fc0ed0f42c14687001d7ff5f7a
| author | iuc |
|---|---|
| date | Sat, 05 Oct 2024 13:05:21 +0000 |
| parents | de53243c4b8b |
| children | 3b96947e95a8 |
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--- a/umi-tools_extract.xml Sat Sep 28 16:37:48 2024 +0000 +++ b/umi-tools_extract.xml Sat Oct 05 13:05:21 2024 +0000 @@ -1,9 +1,9 @@ <tool id="umi_tools_extract" name="UMI-tools extract" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>Extract UMI from fastq files</description> - <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ @COMMAND_LINK@ @@ -111,10 +111,10 @@ <expand macro="log_input_macro"/> </inputs> <outputs> - <data name="out" format_source="input_read1" label="${tool.name} on ${on_string}: Reads" > + <data name="out" format_source="input_read1" label="${tool.name} on ${on_string}: Forward reads" > <filter>input_type_cond['input_type'] in ['single', 'paired']</filter> </data> - <data name="out2" format_source="input_read2" label="${tool.name} on ${on_string}: Reads2" > + <data name="out2" format_source="input_read2" label="${tool.name} on ${on_string}: Reverse reads" > <filter>input_type_cond['input_type'] == 'paired'</filter> </data> <collection name="out_paired_collection" type="paired" label="${tool.name} on ${on_string}: Reads"> @@ -136,7 +136,6 @@ </conditional> <param name="quality_selector" value="true" /> <param name="quality_filter_threshold" value="10" /> - <param name="quality_encoding" value="phred33" /> <param name="log" value="true"/> <output name="out" file="out_SE.fastq" ftype="fastqsanger" /> <output name="out_log" >