Mercurial > repos > iuc > umi_tools_extract
comparison test-data/out_single.log @ 0:34740e5db333 draft
planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
| author | iuc |
|---|---|
| date | Thu, 10 Aug 2017 06:36:31 -0400 |
| parents | |
| children | c4db6345a30b |
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| -1:000000000000 | 0:34740e5db333 |
|---|---|
| 1 # output generated by extract --bc-pattern=XXXNNN --stdin=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat --stdout /home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat | |
| 2 # job started at Wed Aug 9 09:51:05 2017 on packer-test -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b | |
| 3 # pid: 7652, system: Linux 4.4.0-83-generic #106-Ubuntu SMP Mon Jun 26 17:54:43 UTC 2017 x86_64 | |
| 4 # log2stderr : False | |
| 5 # loglevel : 1 | |
| 6 # pattern : XXXNNN | |
| 7 # pattern2 : None | |
| 8 # prime3 : True | |
| 9 # quality_encoding : phred33 | |
| 10 # quality_filter_threshold : 10 | |
| 11 # random_seed : None | |
| 12 # read2_in : None | |
| 13 # read2_out : None | |
| 14 # short_help : None | |
| 15 # split : False | |
| 16 # stats : True | |
| 17 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | |
| 18 # stdin : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_867.dat' mode='r' encoding='UTF-8'> | |
| 19 # stdlog : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_887.dat' mode='a' encoding='UTF-8'> | |
| 20 # stdout : <_io.TextIOWrapper name='/home/ubuntu/mount/git/temp/galaxy/database/files/000/dataset_886.dat' mode='w' encoding='UTF-8'> | |
| 21 # timeit_file : None | |
| 22 # timeit_header : None | |
| 23 # timeit_name : all | |
| 24 Barcode UMI Sample Count | |
| 25 AAGTTA TTA AAG 1 | |
| 26 GGATTT TTT GGA 1 | |
| 27 GGATAG TAG GGA 1 | |
| 28 TTTTTT TTT TTT 4 | |
| 29 GAGAGG AGG GAG 1 | |
| 30 TTAGTT GTT TTA 1 | |
| 31 TGTAGA AGA TGT 1 | |
| 32 AGAGAT GAT AGA 1 | |
| 33 GAATAA TAA GAA 1 | |
| 34 TTGAGT AGT TTG 1 | |
| 35 TTTATT ATT TTT 1 | |
| 36 GTAAGG AGG GTA 1 | |
| 37 GAAGAG GAG GAA 1 | |
| 38 TGTTTG TTG TGT 1 | |
| 39 ATAATG ATG ATA 1 | |
| 40 TTAGAT GAT TTA 1 | |
| 41 GTCTGA TGA GTC 1 | |
| 42 ATCATC ATC ATC 1 | |
| 43 GTCACC ACC GTC 1 | |
| 44 AACTCC TCC AAC 1 | |
| 45 TTATTA TTA TTA 1 | |
| 46 TGTTGT TGT TGT 2 | |
| 47 GTTTAT TAT GTT 1 | |
| 48 ATGAGT AGT ATG 1 | |
| 49 ATAATT ATT ATA 1 | |
| 50 TTGGTT GTT TTG 1 | |
| 51 GTTTTG TTG GTT 1 | |
| 52 CACGTC GTC CAC 1 | |
| 53 TTGTGT TGT TTG 1 | |
| 54 TGAATT ATT TGA 1 | |
| 55 GGATGT TGT GGA 1 | |
| 56 AGTCAC CAC AGT 1 | |
| 57 GTTTTT TTT GTT 1 | |
| 58 TATAGT AGT TAT 1 | |
| 59 TTTTAT TAT TTT 1 | |
| 60 TAAAAA AAA TAA 1 | |
| 61 ATAGGT GGT ATA 1 | |
| 62 ATTTTA TTA ATT 1 | |
| 63 TGTATA ATA TGT 1 | |
| 64 TGTTTT TTT TGT 2 | |
| 65 AGATTT TTT AGA 1 | |
| 66 TAGAAT AAT TAG 1 | |
| 67 GAAGGA GGA GAA 1 | |
| 68 GTTTGA TGA GTT 1 | |
| 69 TTTTGT TGT TTT 1 | |
| 70 ATTTTT TTT ATT 1 | |
| 71 TGTTAT TAT TGT 1 | |
| 72 CAGGAT GAT CAG 1 | |
| 73 GTATTT TTT GTA 1 | |
| 74 TGGGTA GTA TGG 1 | |
| 75 AAAGTT GTT AAA 1 | |
| 76 GGTGTG GTG GGT 1 | |
| 77 AAGATC ATC AAG 1 | |
| 78 TAGGTT GTT TAG 1 | |
| 79 GAGTTA TTA GAG 1 | |
| 80 TTATTT TTT TTA 1 | |
| 81 GTTGTT GTT GTT 1 | |
| 82 AGGTTT TTT AGG 1 | |
| 83 TAAAGT AGT TAA 1 | |
| 84 AGTTTT TTT AGT 1 | |
| 85 TTTGAT GAT TTT 1 | |
| 86 ATAAAT AAT ATA 1 | |
| 87 GTTATT ATT GTT 1 | |
| 88 TTTTTA TTA TTT 1 | |
| 89 AAGTGT TGT AAG 1 | |
| 90 ATATAG TAG ATA 1 | |
| 91 TATAGA AGA TAT 1 | |
| 92 # job finished in 0 seconds at Wed Aug 9 09:51:05 2017 -- 0.36 0.02 0.00 0.00 -- e5896848-87b1-4bf4-a96c-b7a4a83a0b8b |