--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/netsyntenic.xml	Wed Sep 04 10:32:21 2024 +0000
@@ -0,0 +1,43 @@
+<tool id="ucsc_netsyntenic" name="netSyntenic" version="@TOOL_VERSION@+galaxy0" profile="21.05" license="MIT">
+    <description>
+        Add synteny info to a net
+    </description>
+    <macros>
+        <token name="@TOOL_VERSION@">469</token>
+    </macros>
+    <xrefs>
+        <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
+    </xrefs>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">ucsc-netsyntenic</requirement>
+    </requirements>
+    <version_command><![CDATA[ echo "@TOOL_VERSION@" ]]></version_command>
+    <command detect_errors="exit_code"><![CDATA[
+    netSyntenic
+        '$in_net'
+        '$out'
+    ]]></command>
+    <inputs>
+        <param name="in_net" format="ucsc.net" type="data" label="Input net" />
+    </inputs>
+    <outputs>
+        <data name="out" format="ucsc.net" />
+    </outputs>
+    <tests>
+        <test expect_num_outputs="1">
+            <param name="in_net" value="input1.ucsc.net" />
+            <output name="out" file="out1.ucsc.net"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+`netSyntenic`_ is a tool to add synteny info to a net. See details of `net format`.
+
+.. _netSyntenic: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
+.. _net format: https://genome.ucsc.edu/goldenPath/help/net.html
+    ]]>    </help>
+    <citations>
+        <citation type="doi">10.1093/bib/bbs038</citation>
+    </citations>
+</tool>