Mercurial > repos > iuc > ucsc_mafcoverage

view test-data/malformed.maf @ 0:5b93ee6a19ae draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/maftools commit 62876fcda4bf5b365ef9c1bee10d611dda5453a9
author iuc
date Tue, 09 Sep 2025 16:21:06 +0000
parents
children
line wrap: on
line source

##maf version=1 scoring=example
a score=1000.0
s human.chr1  100 10 + 1000 ACGTACGTAC
s mouse.chr1  200 10 + 2000 ACGTACGTAC
s dog.chr1    300 10 + 3000 ACGTACGTAC

a score=500.0
s human.chr2  150 5 + 1000 ACGTA
s mouse.chr2  250 5 + 2000 ACGT-

a score=200.0
s human.chr3  200 15 + 1000 ACGTACGTACGTACG
s cat.chr3    350 15 + 4000 ACGTACGTACGTACG
s dog.chr3    450 15 + 5000 ACGTACGTACGTACG
s rat.chr3    550 15 + 6000 ACGTACGTACGTACG

a score=50.0
s human.chr4  110 10 + 1000 ACGTACGTAC
s mouse.chr4  210 10 + 2000 ACGTACGTAC

a score=3000.0
s human.chr5  105 10 + 1000 ACGTACGTAC
s mouse.chr5  205 10 + 2000 ACGTACGTAC
s dog.chr5    305 10 + 3000 ACGTACGTAC
s cat.chr5    405 10 + 4000 ACGTACGTAC
s rat.chr5    505 10 + 5000 ACGTACGTAC
s cow.chr5    605 10 + 6000 ACGTACGTAC

a score=600.0
s human.chr6  100 10 + 1000 ACGTACGTAC
s mouse.chr6  200 10 + 2000 ACGTACGTAC
s dog.chr6