Mercurial > repos > iuc > ucsc_fatovcf

annotate test-data/out2.vcf @ 3:18c9f51a37a1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fatovcf commit cf03c3f6b7afb8e673cc5ced6178d4f6f96a9116
author iuc
date Tue, 03 Dec 2024 09:45:26 +0000
parents 02e7428386ab
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.2
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
2 ##reference=test-data/input.fa:sample3
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
3 ##source=faToVcf test-data/input.fa out-test.vcf
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
4 #CHROM POS ID REF ALT QUAL FILTER INFO
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
5 sample1 3 R3R R * . . AC=0;AN=0
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
6 sample1 5 A5G A G . . AC=1;AN=2
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
7 sample1 8 G8A G A . . AC=1;AN=2
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
8 sample1 11 T11G T G . . AC=1;AN=2