Mercurial > repos > iuc > ucsc_fatovcf

annotate test-data/mask.vcf @ 3:18c9f51a37a1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fatovcf commit cf03c3f6b7afb8e673cc5ced6178d4f6f96a9116
author iuc
date Tue, 03 Dec 2024 09:45:26 +0000
parents 02e7428386ab
children
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02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
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diff changeset
1 ##fileformat=VCFv4.3
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
2 ##INFO=<ID=GENE,Number=1,Type=String,Description="Position falls into range of this gene">
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
3 ##INFO=<ID=AA_POS,Number=1,Type=Integer,Description="Position of amino acid residue within gene">
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
4 ##INFO=<ID=AA_REF,Number=1,Type=String,Description="Reference amino acid residue">
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
5 ##INFO=<ID=AA_ALT,Number=.,Type=String,Description="List of alternative amino acid residues (IUPAC ambiguity code)">
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
6 #CHROM POS ID REF ALT QUAL FILTER INFO
02e7428386ab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/fatovcf commit 16910aa7b33e5ff73430be1ca9d7727f4ea5786a
iuc
parents:
diff changeset
7 sample3 3 . T . . mask SUB=NDM;EXC=seq_end