Mercurial > repos > iuc > ucsc_chainnet

annotate test-data/target.1200.net @ 0:3d8635fc3e51 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
author iuc
date Fri, 30 Aug 2024 17:53:36 +0000
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3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
1 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
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diff changeset
2 ##gapPenalties=axtChain O=400 E=30
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
3 net hg38.chr20:10004760-11615810 1611050
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
4 fill 49202 176 mm39.chr2:136351215-137822786 + 42266 172 id 13 score 4568 ali 172
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
5 fill 84589 137 mm39.chr2:136351215-137822786 + 87751 136 id 6 score 6961 ali 136
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
6 fill 87669 167 mm39.chr2:136351215-137822786 + 87101 168 id 7 score 6916 ali 167
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
7 fill 148667 69 mm39.chr2:136351215-137822786 + 158262 69 id 15 score 2152 ali 68
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
8 fill 195854 50 mm39.chr2:136351215-137822786 + 189780 50 id 18 score 1336 ali 50
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
9 fill 195952 38 mm39.chr2:136351215-137822786 + 189050 37 id 20 score 1248 ali 36
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
10 fill 266744 261 mm39.chr2:136351215-137822786 - 244295 318 id 3 score 13332 ali 256
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
11 fill 288114 161 mm39.chr2:136351215-137822786 + 260754 161 id 5 score 8091 ali 161
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
12 fill 288278 276 mm39.chr2:136351215-137822786 + 260289 312 id 4 score 9256 ali 268
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
13 fill 398052 55 mm39.chr2:136351215-137822786 + 364812 49 id 19 score 1280 ali 48
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
14 fill 469454 23 mm39.chr2:136351215-137822786 + 409807 23 id 16 score 1838 ali 23
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
15 fill 580524 105 mm39.chr2:136351215-137822786 + 516292 70 id 22 score 1201 ali 70
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
16 fill 600994 130 mm39.chr2:136351215-137822786 + 546215 130 id 8 score 5978 ali 130
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
17 fill 640387 120 mm39.chr2:136351215-137822786 + 579921 120 id 14 score 3681 ali 120
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
18 fill 796556 102 mm39.chr2:136351215-137822786 + 722616 101 id 10 score 5873 ali 101
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
19 fill 796671 81 mm39.chr2:136351215-137822786 + 722717 82 id 17 score 1399 ali 73
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
20 fill 879848 2177 mm39.chr2:136351215-137822786 - 821044 1970 id 2 score 64329 ali 1889
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
21 gap 880298 77 mm39.chr2:136351215-137822786 - 822602 0
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
22 gap 881628 27 mm39.chr2:136351215-137822786 - 821380 0
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
23 fill 890884 148 mm39.chr2:136351215-137822786 - 824476 150 id 11 score 5421 ali 148
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
24 fill 1121156 98 mm39.chr2:136351215-137822786 + 1062631 89 id 21 score 1208 ali 87
3d8635fc3e51 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/ucsc_chainnet commit 09ce055ec6cd95f6999cc680a707418cee25d42a
iuc
parents:
diff changeset
25 fill 1425778 120 mm39.chr2:136351215-137822786 + 1342678 120 id 12 score 4864 ali 120