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comparison tximport.xml @ 3:915a9dd57e1a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tximport commit 5f8e6e70a9d82331367f7a052a76a04c47c5144e
author iuc
date Sat, 28 Sep 2024 16:33:10 +0000
parents 865d5bc8f531
children
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2:865d5bc8f531 3:915a9dd57e1a
1 <tool id="tximport" name="tximport" version="@TOOL_VERSION@" profile="20.09"> 1 <tool id="tximport" name="tximport" version="@TOOL_VERSION@" profile="20.09">
2 <macros> 2 <macros>
3 <token name="@TOOL_VERSION@">1.22.0</token> 3 <token name="@TOOL_VERSION@">1.30.0</token>
4 </macros> 4 </macros>
5 <description>Summarize transcript-level estimates for gene-level analysis</description> 5 <description>Summarize transcript-level estimates for gene-level analysis</description>
6 <xrefs> 6 <xrefs>
7 <xref type="bio.tools">tximport</xref> 7 <xref type="bio.tools">tximport</xref>
8 <xref type="bioconductor">tximport</xref>
8 </xrefs> 9 </xrefs>
9 <requirements> 10 <requirements>
10 <requirement type="package" version="@TOOL_VERSION@">bioconductor-tximport</requirement> 11 <requirement type="package" version="@TOOL_VERSION@">bioconductor-tximport</requirement>
11 <requirement type="package" version="1.46.1">bioconductor-genomicfeatures</requirement> 12 <requirement type="package" version="1.54.1">bioconductor-genomicfeatures</requirement>
12 <requirement type="package" version="1.20.3">r-getopt</requirement> 13 <requirement type="package" version="1.20.4">r-getopt</requirement>
13 </requirements> 14 </requirements>
14 15
15 <stdio> 16 <stdio>
16 <exit_code range="1:" level="fatal" description="Error code returned" /> 17 <exit_code range="1:" level="fatal" description="Error code returned" />
17 <regex match="is not TRUE" 18 <regex match="is not TRUE"
207 208
208 Current version only works in 'merge' mode: A single table of gene summarizations is generated with one column for each sample file. 209 Current version only works in 'merge' mode: A single table of gene summarizations is generated with one column for each sample file.
209 Take into account that DEseq2 package in Galaxy requires one table per sample. 210 Take into account that DEseq2 package in Galaxy requires one table per sample.
210 ]]></help> 211 ]]></help>
211 <citations> 212 <citations>
212 <citation type="doi">doi:10.18129/B9.bioc.tximport</citation> 213 <citation type="doi">10.18129/B9.bioc.tximport</citation>
213 </citations> 214 </citations>
214 </tool> 215 </tool>