Mercurial > repos > iuc > trinity_super_transcripts

comparison super_transcripts.xml @ 11:b4094dad3f41 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
author iuc
date Tue, 08 Aug 2023 08:55:56 +0000
parents 1a7b4d2a8916
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10:1a7b4d2a8916 11:b4094dad3f41
27 <help> 27 <help>
28 SuperTranscripts provide a gene-like view of the transcriptional complexity of a gene. SuperTranscripts were originally defined by Nadia Davidson, Anthony Hawkins, and Alicia Oshlack as described in their publication "SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes" Genome Biology, 2017. SuperTranscripts are useful in the context of genome-free de novo transcriptome assembly in that they provide a genome-like reference for studying aspects of the gene including differential transcript usage (aka. differential exon usage) and as a substrate for mapping reads and identifying allelic polymorphisms. 28 SuperTranscripts provide a gene-like view of the transcriptional complexity of a gene. SuperTranscripts were originally defined by Nadia Davidson, Anthony Hawkins, and Alicia Oshlack as described in their publication "SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes" Genome Biology, 2017. SuperTranscripts are useful in the context of genome-free de novo transcriptome assembly in that they provide a genome-like reference for studying aspects of the gene including differential transcript usage (aka. differential exon usage) and as a substrate for mapping reads and identifying allelic polymorphisms.
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30 A SuperTranscript is constructed by collapsing unique and common sequence regions among splicing isoforms into a single linear sequence. 30 A SuperTranscript is constructed by collapsing unique and common sequence regions among splicing isoforms into a single linear sequence.
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32 .. _Trinity: http://trinityrnaseq.github.io 32 .. _Trinity: https://github.com/trinityrnaseq/trinityrnaseq/wiki
33 </help> 33 </help>
34 34
35 <expand macro="citation" /> 35 <expand macro="citation" />
36 </tool> 36 </tool>