Mercurial > repos > iuc > trinity_samples_qccheck

annotate samples_qccheck.xml @ 20:92eb9747c391 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
author iuc
date Tue, 08 Aug 2023 08:59:49 +0000
parents 3255ea2cae66
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
1 <tool id="trinity_samples_qccheck" name="RNASeq samples quality check" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
2 <description>for transcript quantification</description>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
3 <macros>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
4 <import>macros.xml</import>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
5 </macros>
17
7f5fc85ff6ae "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c468d2b9613f88cc5f96f77ab1e0592d3c9ce707"
iuc
parents: 16
diff changeset
6 <expand macro="bio_tools"/>
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
7 <expand macro="requirements"/>
5
8ccfc1cf9390 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 7efdf3224552d113a01043ee5bf4517d770df933
iuc
parents: 1
diff changeset
8 <command detect_errors="aggressive"><![CDATA[
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
9
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
10 ln -f -s '${matrix}' input.matrix
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
11 &&
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
12 PtR
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
13 --matrix input.matrix
9
c5cce95aa90a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
iuc
parents: 6
diff changeset
14 --samples '${samples}'
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
15 --CPM --log2 --compare_replicates
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
16 &&
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
17 PtR
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
18 --matrix input.matrix
9
c5cce95aa90a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
iuc
parents: 6
diff changeset
19 --samples '${samples}'
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
20 --CPM --log2 --sample_cor_matrix
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
21 &&
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
22 PtR
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
23 --matrix input.matrix
9
c5cce95aa90a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 9dcdb5348f7439d0ce1e44ed23ad226beb4ae6d4
iuc
parents: 6
diff changeset
24 --samples '${samples}'
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
25 --CPM --log2
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
26 --prin_comp 3
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
27 && mkdir out_pdf
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
28 && mv *rep_compare.pdf out_pdf/
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
29 && mv *sample_cor_matrix.pdf out_pdf/
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
30 && mv *principal_components.pdf out_pdf/
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
31
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
32 ]]></command>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
33 <inputs>
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
34 <param argument="--matrix" format="tabular" type="data" label="Expression matrix" help="Output of abundance_estimates_to_matrix tool"/>
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
35 <param argument="--samples" format="tabular" type="data" label="Samples description" help="File describing samples and replicates"/>
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
36 </inputs>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
37 <outputs>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
38 <collection name="reports" type="list" label="Quality check result files on ${on_string}">
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
39 <discover_datasets pattern="__name__" ext="pdf" directory="out_pdf" />
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
40 </collection>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
41 </outputs>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
42 <tests>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
43 <test>
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
44 <param name="matrix" value="count/qcheck/matrix.counts.matrix" ftype="tabular" />
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
45 <param name="samples" value="count/samples.txt" ftype="tabular"/>
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
46 <output_collection name="reports">
19
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
47 <element name="input.matrix.CPM.log2.prcomp.principal_components.pdf" compare="sim_size" delta="100" file="count/qcheck/input.matrix.CPM.log2.prcomp.principal_components.pdf"/>
3255ea2cae66 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1d443e73d2eb888660bbbc7af198f5bcca9c1a70
iuc
parents: 17
diff changeset
48 <element name="input.matrix.CPM.log2.sample_cor_matrix.pdf" compare="sim_size" delta="100" file="count/qcheck/input.matrix.CPM.log2.sample_cor_matrix.pdf"/>
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
49 <element name="wt_37.rep_compare.pdf" compare="sim_size" delta="100" file="count/qcheck/wt_37.rep_compare.pdf"/>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
50 <element name="wt_GSNO.rep_compare.pdf" compare="sim_size" delta="100" file="count/qcheck/wt_GSNO.rep_compare.pdf"/>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
51 <element name="wt_ph8.rep_compare.pdf" compare="sim_size" delta="100" file="count/qcheck/wt_ph8.rep_compare.pdf"/>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
52 </output_collection>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
53 </test>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
54 </tests>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
55 <help>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
56 <![CDATA[
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
57 Trinity_ assembles transcript sequences from Illumina RNA-Seq data.
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
58 This tool performs some Quality Checks on a RNASeq experiment, analysing the abundance estimation for different samples using a transcriptome assembled with Trinity.
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
59
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
60 **Inputs**
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
61
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
62 This tool uses the matrix produced by 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity' tool.
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
63
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
64 You must describe your samples and replicates with a tabular file looking like this:
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
65
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
66 =========== ================
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
67 ConditionA CondA_replicate1
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
68 ----------- ----------------
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
69 ConditionA CondA_replicate2
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
70 ----------- ----------------
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
71 ConditionB CondB_replicate1
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
72 ----------- ----------------
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
73 ConditionB CondB_replicate2
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
74 ----------- ----------------
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
75 ConditionC CondC_replicate1
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
76 ----------- ----------------
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
77 ConditionC CondC_replicate2
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
78 ----------- ----------------
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
79 ConditionC CondC_replicate3
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
80 =========== ================
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
81
1
24cd446d7571 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 95f3e6a69bf939326c73a98e3306bccae8414ecd
iuc
parents: 0
diff changeset
82 This file can be generated with the 'Describe samples and replicates' tool.
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
83 The names in column 2 must match the names given in the tool 'Build expression matrix for a de novo assembly of RNA-Seq data by Trinity'.
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
84
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
85 **Output**
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
86
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
87 This tool will produce several PDF files, see the following page for more information:
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
88
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
89 .. _Trinity manual: https://github.com/trinityrnaseq/trinityrnaseq/wiki/QC-Samples-and-Replicates
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
90
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
91
20
92eb9747c391 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit c6eab3b60743dfa415dc135d657267cc8a0a31ce
iuc
parents: 19
diff changeset
92 .. _Trinity: https://github.com/trinityrnaseq/trinityrnaseq/wiki
0
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
93 ]]>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
94 </help>
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
95
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
96 <expand macro="citation" />
9f9c428b1e78 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 1599ee1b8e873cf0e40d4a63bb7c734317db4eed
iuc
parents:
diff changeset
97 </tool>