# HG changeset patch
# User iuc
# Date 1695220182 0
# Node ID 29a00eedbc451a6fa5884402cf84973412c19c13
# Parent  616127c6f201e5512b75bd8fb112ae08dc068856
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit ec26c475a013d89b0f973f29250d660e79d4751f

diff -r 616127c6f201 -r 29a00eedbc45 abundance_estimates_to_matrix.xml
--- a/abundance_estimates_to_matrix.xml	Tue Aug 08 09:01:42 2023 +0000
+++ b/abundance_estimates_to_matrix.xml	Wed Sep 20 14:29:42 2023 +0000
@@ -89,7 +89,7 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="3">
             <param name="samples" ftype="tabular" value="count/rsem_bowtie/sample_A,count/rsem_bowtie/sample_B"/>
             <param name="est_method" value="RSEM"/>
             <param name="cross_sample_norm" value="TMM"/>
@@ -112,7 +112,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="samples" ftype="tabular" value="count/rsem_bowtie2/sample_A,count/rsem_bowtie2/sample_B"/>
             <param name="est_method" value="RSEM"/>
             <param name="cross_sample_norm" value="TMM"/>
@@ -135,7 +135,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="samples" ftype="tabular" value="count/express_bowtie/sample_A,count/express_bowtie/sample_B"/>
             <param name="est_method" value="eXpress"/>
             <param name="cross_sample_norm" value="TMM"/>
@@ -158,7 +158,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="samples" ftype="tabular" value="count/rsem_bowtie/sample_A,count/rsem_bowtie/sample_B"/>
             <param name="est_method" value="RSEM"/>
             <param name="cross_sample_norm" value="UpperQuartile"/>
@@ -180,7 +180,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="samples" ftype="tabular" value="count/rsem_bowtie/sample_A,count/rsem_bowtie/sample_B"/>
             <param name="est_method" value="RSEM"/>
             <param name="cross_sample_norm" value="none"/>
@@ -197,7 +197,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="2">
             <param name="samples" ftype="tabular" value="count/salmon/sample_A,count/salmon/sample_B"/>
             <param name="est_method" value="salmon"/>
             <param name="cross_sample_norm" value="none"/>
@@ -214,7 +214,7 @@
                 </assert_contents>
             </output>
         </test>
-        <test>
+        <test expect_num_outputs="3">
             <param name="samples" ftype="tabular" value="count/kallisto/abundance.tsv.genes,count/kallisto/abundance_B.tsv.genes"/>
             <param name="est_method" value="kallisto"/>
             <param name="cross_sample_norm" value="TMM"/>