# HG changeset patch
# User iuc
# Date 1464203067 14400
# Node ID a3d60df650b73b7fc4246659867e55132cc5e09c
# Parent  dfe891be734c3330b8a7ff0894943f733bc0c533
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 46636ba3d63d34e9ee30a2e0ee28cca0213628c8

diff -r dfe891be734c -r a3d60df650b7 abundance_estimates_to_matrix.xml
--- a/abundance_estimates_to_matrix.xml	Thu May 12 06:43:34 2016 -0400
+++ b/abundance_estimates_to_matrix.xml	Wed May 25 15:04:27 2016 -0400
@@ -200,7 +200,7 @@
     </help>
 
      <citations>
-        <citation type="doi">doi:10.1038/nbt.1883</citation>
+        <citation type="doi">10.1038/nbt.1883</citation>
     </citations>
 </tool>
 
diff -r dfe891be734c -r a3d60df650b7 align_and_estimate_abundance.xml
--- a/align_and_estimate_abundance.xml	Thu May 12 06:43:34 2016 -0400
+++ b/align_and_estimate_abundance.xml	Wed May 25 15:04:27 2016 -0400
@@ -254,7 +254,7 @@
     </help>
 
      <citations>
-        <citation type="doi">doi:10.1038/nbt.1883</citation>
+        <citation type="doi">10.1038/nbt.1883</citation>
     </citations>
 </tool>
 
diff -r dfe891be734c -r a3d60df650b7 run_DE_analysis.xml
--- a/run_DE_analysis.xml	Thu May 12 06:43:34 2016 -0400
+++ b/run_DE_analysis.xml	Wed May 25 15:04:27 2016 -0400
@@ -140,7 +140,7 @@
     </help>
 
      <citations>
-        <citation type="doi">doi:10.1038/nbt.1883</citation>
+        <citation type="doi">10.1038/nbt.1883</citation>
     </citations>
 </tool>
 
diff -r dfe891be734c -r a3d60df650b7 samples_qccheck.xml
--- a/samples_qccheck.xml	Thu May 12 06:43:34 2016 -0400
+++ b/samples_qccheck.xml	Wed May 25 15:04:27 2016 -0400
@@ -108,7 +108,7 @@
     </help>
     
      <citations>
-        <citation type="doi">doi:10.1038/nbt.1883</citation>
+        <citation type="doi">10.1038/nbt.1883</citation>
     </citations>
 </tool>
 
diff -r dfe891be734c -r a3d60df650b7 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu May 12 06:43:34 2016 -0400
+++ b/tool_dependencies.xml	Wed May 25 15:04:27 2016 -0400
@@ -25,7 +25,7 @@
         <repository changeset_revision="4ae6642b634f" name="package_r_limma_3_28_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="deseq2" version="1.10.0">
-       <repository changeset_revision="b771de3e4f63" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+       <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <set_environment version="1.0">
         <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>
diff -r dfe891be734c -r a3d60df650b7 trinity.xml
--- a/trinity.xml	Thu May 12 06:43:34 2016 -0400
+++ b/trinity.xml	Wed May 25 15:04:27 2016 -0400
@@ -162,7 +162,7 @@
     </help>
 
      <citations>
-        <citation type="doi">doi:10.1038/nbt.1883</citation>
+        <citation type="doi">10.1038/nbt.1883</citation>
     </citations>
 </tool>