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comparison trinity.xml @ 23:fc8249b4d3c1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 4b89602ac841ab33422b27a4267916de96101bf5
author iuc
date Wed, 17 Oct 2018 12:49:28 -0400
parents 3867ecd957f7
children 20fb86e85c0f
comparison
equal deleted inserted replaced
22:35520c1c0940 23:fc8249b4d3c1
188 <expand macro="input_paired_strand_jaccard" /> 188 <expand macro="input_paired_strand_jaccard" />
189 </when> 189 </when>
190 </conditional> 190 </conditional>
191 </when> 191 </when>
192 </conditional> 192 </conditional>
193 <param name="norm" type="boolean" argument="--normalize_reads" truevalue="--normalize_reads" falsevalue="" checked="true" label="Run in silico normalization of reads" help="Defaults to max. read coverage of 50."/> 193 <param name="norm" type="boolean" argument="--no_normalize_reads" truevalue="" falsevalue="--no_normalize_reads" checked="true" label="Run in silico normalization of reads" help="Defaults to max. read coverage of 50."/>
194 <section name="additional_params" title="Additional Options" expanded="False"> 194 <section name="additional_params" title="Additional Options" expanded="False">
195 <param name="min_contig_length" argument="--min_contig_length" type="integer" optional="true" value="200" min="1" label="Minimum Contig Length" help="All contigs shorter than this will be discarded"/> 195 <param name="min_contig_length" argument="--min_contig_length" type="integer" optional="true" value="200" min="1" label="Minimum Contig Length" help="All contigs shorter than this will be discarded"/>
196 196
197 <conditional name="guided"> 197 <conditional name="guided">
198 <param name="is_guided" type="select" label="Use the genome guided mode?" help="If you already mapped the reads to the genome, Trinity can use this information"> 198 <param name="is_guided" type="select" label="Use the genome guided mode?" help="If you already mapped the reads to the genome, Trinity can use this information">