Mercurial > repos > iuc > trinity
comparison run_DE_analysis.xml @ 9:934ac844f93d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 811337eaab815f54f0fd93a3dd23a1153993ea2a
| author | iuc |
|---|---|
| date | Tue, 28 Jun 2016 12:22:27 -0400 |
| parents | 3cc94f4d58ae |
| children |
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| 8:3cc94f4d58ae | 9:934ac844f93d |
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| 77 <param format="tabular" name="contrasts" optional="true" type="data" label="Pairs of sample comparisons to perform" help="A 2-column tabular with lists of pairs of samples to compare"/> | 77 <param format="tabular" name="contrasts" optional="true" type="data" label="Pairs of sample comparisons to perform" help="A 2-column tabular with lists of pairs of samples to compare"/> |
| 78 </section> | 78 </section> |
| 79 </inputs> | 79 </inputs> |
| 80 <outputs> | 80 <outputs> |
| 81 <collection name="DE_results" type="list" label="Differential expression results on ${on_string}"> | 81 <collection name="DE_results" type="list" label="Differential expression results on ${on_string}"> |
| 82 <discover_datasets pattern="(?P<name>.+)\.DE_results" ext="tabular" directory="results" visible="true" /> | 82 <discover_datasets pattern="(?P<name>.+)\.DE_results$" ext="tabular" directory="results" /> |
| 83 </collection> | 83 </collection> |
| 84 <collection name="PDF_results" type="list" label="Differential expression plots on ${on_string}"> | 84 <collection name="PDF_results" type="list" label="Differential expression plots on ${on_string}"> |
| 85 <discover_datasets pattern="(?P<name>.+)\.pdf" ext="pdf" directory="results" visible="true" /> | 85 <discover_datasets pattern="(?P<name>.+)\.pdf$" ext="pdf" directory="results" /> |
| 86 </collection> | 86 </collection> |
| 87 </outputs> | 87 </outputs> |
| 88 <tests> | 88 <tests> |
| 89 <test> | 89 <test> |
| 90 <param name="matrix" value="count/qcheck/matrix.counts.matrix"/> | 90 <param name="matrix" value="count/qcheck/matrix.counts.matrix"/> |