Mercurial > repos > iuc > trinity

comparison tool_dependencies.xml @ 8:3cc94f4d58ae draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit 6dad4ca6483946af64f484feaff78ac9d1d87352
author iuc
date Mon, 20 Jun 2016 11:44:29 -0400
parents c6bebb3b3962
children 662304ba13a7
comparison
equal deleted inserted replaced
7:c6bebb3b3962 8:3cc94f4d58ae
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="trinity" version="2.1.1"> 3 <package name="trinity" version="2.1.1">
4 <repository changeset_revision="c550c572d8b8" name="package_trinity_2_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="cc51a3467ff1" name="package_trinity_2_1_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bowtie" version="1.1.2"> 6 <package name="bowtie" version="1.1.2">
7 <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="bowtie2" version="2.2.6"> 9 <package name="bowtie2" version="2.2.6">
10 <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="samtools" version="1.2"> 12 <package name="samtools" version="1.2">
13 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="edger" version="3.12.0"> 15 <package name="bioconductor-edger" version="3.14.0">
16 <repository changeset_revision="c0e0ef144301" name="package_r_edger_3_12_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="d1ebebe12abc" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="rsem" version="1.2.28"> 18 <package name="rsem" version="1.2.28">
19 <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
20 </package> 20 </package>
21 <package name="express" version="1.5.1"> 21 <package name="eXpress" version="1.5.1">
22 <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 22 <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
23 </package> 23 </package>
24 <package name="limma" version="3.28.2"> 24 <package name="bioconductor-limma" version="3.28.10">
25 <repository changeset_revision="4ae6642b634f" name="package_r_limma_3_28_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 25 <repository changeset_revision="90b7c39ce562" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
26 </package> 26 </package>
27 <package name="deseq2" version="1.10.0"> 27 <package name="deseq2" version="1.10.0">
28 <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 28 <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
29 </package> 29 </package>
30 <set_environment version="1.0"> 30 <set_environment version="1.0">
31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable> 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable>
32 </set_environment> 32 </set_environment>
33 </tool_dependency> 33 </tool_dependency>