Mercurial > repos > iuc > transit_tn5gaps

diff transit_tn5gaps.xml @ 4:3b34399c0242 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
author iuc
date Tue, 27 May 2025 19:58:55 +0000
parents 8c4642d6aaef
children
line wrap: on
line diff
--- a/transit_tn5gaps.xml	Sat Nov 27 09:43:46 2021 +0000
+++ b/transit_tn5gaps.xml	Tue May 27 19:58:55 2025 +0000
@@ -10,6 +10,7 @@
     	@LINK_INPUTS@
         transit tn5gaps $input_files annotation.dat transit_out.txt
         @STANDARD_OPTIONS@
+         -r $handle_replicates
          -m $smallest
         ]]>
     </command>
@@ -113,8 +114,8 @@
 
 See  `TRANSIT documentation`
 
-- TRANSIT: https://transit.readthedocs.io/en/latest/index.html
-- `TRANSIT Tn5Gaps`: https://transit.readthedocs.io/en/latest/transit_methods.html#tn5gaps
+- TRANSIT: https://transit.readthedocs.io/en/v@TOOL_VERSION@/index.html
+- `TRANSIT Tn5Gaps`: https://transit.readthedocs.io/en/v@TOOL_VERSION@/transit_methods.html#tn5gaps
     ]]></help>
 
     <expand macro="citations" />