Mercurial > repos > iuc > transit_tn5gaps

comparison transit_tn5gaps.xml @ 4:3b34399c0242 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
author iuc
date Tue, 27 May 2025 19:58:55 +0000
parents 8c4642d6aaef
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3:8c4642d6aaef 4:3b34399c0242
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 @LINK_INPUTS@ 10 @LINK_INPUTS@
11 transit tn5gaps $input_files annotation.dat transit_out.txt 11 transit tn5gaps $input_files annotation.dat transit_out.txt
12 @STANDARD_OPTIONS@ 12 @STANDARD_OPTIONS@
13 -r $handle_replicates
13 -m $smallest 14 -m $smallest
14 ]]> 15 ]]>
15 </command> 16 </command>
16 <inputs> 17 <inputs>
17 <expand macro="standard_inputs"> 18 <expand macro="standard_inputs">
111 112
112 ------------------- 113 -------------------
113 114
114 See `TRANSIT documentation` 115 See `TRANSIT documentation`
115 116
116 - TRANSIT: https://transit.readthedocs.io/en/latest/index.html 117 - TRANSIT: https://transit.readthedocs.io/en/v@TOOL_VERSION@/index.html
117 - `TRANSIT Tn5Gaps`: https://transit.readthedocs.io/en/latest/transit_methods.html#tn5gaps 118 - `TRANSIT Tn5Gaps`: https://transit.readthedocs.io/en/v@TOOL_VERSION@/transit_methods.html#tn5gaps
118 ]]></help> 119 ]]></help>
119 120
120 <expand macro="citations" /> 121 <expand macro="citations" />
121 122
122 </tool> 123 </tool>