# HG changeset patch
# User iuc
# Date 1561498986 14400
# Node ID 910f3ee28aaaa80544e62787c29b28e61e8f238e
# Parent  3fcb70c1ca78464dca4593f0d20f03f3ec31f558
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 2281efd6260f058371013e21163fa5931de99080

diff -r 3fcb70c1ca78 -r 910f3ee28aaa macros.xml
--- a/macros.xml	Mon Apr 22 14:40:33 2019 -0400
+++ b/macros.xml	Tue Jun 25 17:43:06 2019 -0400
@@ -12,7 +12,7 @@
 			<yield />
 		</requirements>
 	</xml>
-	<token name="@VERSION@">2.3.3</token>
+	<token name="@VERSION@">2.5.2</token>
 	<xml name="outputs">
         <yield />
         <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" />
diff -r 3fcb70c1ca78 -r 910f3ee28aaa test-data/hmm-sites1.txt
--- a/test-data/hmm-sites1.txt	Mon Apr 22 14:40:33 2019 -0400
+++ b/test-data/hmm-sites1.txt	Tue Jun 25 17:43:06 2019 -0400
@@ -1,9 +1,11 @@
 #HMM - Sites
 # Tn-HMM
-#Console: python /home/inithello/miniconda3/envs/__transit@2.3.3/bin/transit hmm input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -tC 0.0 -r Mean
+#Console: python /home/inithello/miniconda3/envs/__transit@2.5.2/bin/transit hmm input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -tC 0.0 -r Mean
 # 
 # Mean:	225.23
 # Median:	112.00
+# Normalization:	TTR
+# LOESS Correction:	False
 # pins (obs):	0.548435
 # pins (est):	0.668453
 # Run length (r):	5