Mercurial > repos > iuc > transit_resampling
annotate macros.xml @ 11:daf2c40fc3f6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
| author | iuc |
|---|---|
| date | Tue, 27 May 2025 19:58:37 +0000 |
| parents | 8863f1733e36 |
| children |
| rev | line source |
|---|---|
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
2 <macros> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
3 <xml name="citations"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
4 <citations> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
5 <citation type="doi">10.1371/journal.pcbi.1004401</citation> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
6 <yield /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
7 </citations> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
8 </xml> |
|
10
8863f1733e36
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
iuc
parents:
9
diff
changeset
|
9 <xml name="bio_tools"> |
|
8863f1733e36
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
iuc
parents:
9
diff
changeset
|
10 <xrefs> |
|
8863f1733e36
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
iuc
parents:
9
diff
changeset
|
11 <xref type="bio.tools">transit</xref> |
|
8863f1733e36
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
iuc
parents:
9
diff
changeset
|
12 </xrefs> |
|
8863f1733e36
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
iuc
parents:
9
diff
changeset
|
13 </xml> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
14 <xml name="requirements"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
15 <requirements> |
|
10
8863f1733e36
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit d1f8cb0c56e082656c5d4a8729e612bdc5b6e3cc"
iuc
parents:
9
diff
changeset
|
16 <requirement type="package" version="@TOOL_VERSION@">transit</requirement> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
17 <yield /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
18 </requirements> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
19 </xml> |
|
11
daf2c40fc3f6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
iuc
parents:
10
diff
changeset
|
20 <token name="@TOOL_VERSION@">3.2.3</token> |
|
daf2c40fc3f6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
iuc
parents:
10
diff
changeset
|
21 <token name="@VERSION_SUFFIX@">0</token> |
|
daf2c40fc3f6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
iuc
parents:
10
diff
changeset
|
22 <token name="@PROFILE@">22.05</token> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
23 <xml name="outputs"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
24 <yield /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
25 <data name="sites" from_work_dir="transit_out.txt" format="tabular" label="${tool.name} on ${on_string} Sites" /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
26 </xml> |
|
8
32a5211380bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit bd061799ebd49ada1a666d0815720c18291728da"
iuc
parents:
7
diff
changeset
|
27 <xml name="handle_replicates"> |
|
32a5211380bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit bd061799ebd49ada1a666d0815720c18291728da"
iuc
parents:
7
diff
changeset
|
28 <param name="handle_replicates" type="select" label="How to handle replicates" value="Mean"> |
|
32a5211380bc
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit bd061799ebd49ada1a666d0815720c18291728da"
iuc
parents:
7
diff
changeset
|
29 <option value="Sum">Sum</option> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
30 <option value="Mean">Mean</option> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
31 </param> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
32 </xml> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
33 <xml name="inputs"> |
|
4
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
34 <conditional name="mode"> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
35 <param name="replicates" type="select" label="Operation mode" help="If set to 'Batch', transit will run and produce one output for each input file. If set to 'Replicates', transit will run once on all the input files."> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
36 <option value="Batch">Batch</option> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
37 <option value="Replicates">Replicates</option> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
38 </param> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
39 <when value="Batch"> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
40 <param name="inputs" type="data" format="wig,tabular" multiple="false" label="Input .wig files" /> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
41 </when> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
42 <when value="Replicates"> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
43 <param name="inputs" type="data" format="wig,tabular" multiple="true" label="Input .wig files" /> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
44 </when> |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
45 </conditional> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
46 <yield /> |
|
2
173bf0f6ca1e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0-dirty
iuc
parents:
1
diff
changeset
|
47 <param name="annotation" type="data" format="gff3,tabular" label="Input annotation" /> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
48 </xml> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
49 <xml name="ignore_tas"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
50 <param name="nterm" argument="-iN" type="float" value="0" min="0" max="1" label="Ignore TAs occuring at given fraction of the N terminus." /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
51 <param name="cterm" argument="-iC" type="float" value="0" min="0" max="1" label="Ignore TAs occuring at given fraction of the C terminus." /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
52 </xml> |
|
7
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
53 <xml name="normal"> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
54 <param name="normalization" argument="-n" type="select" label="Normalization method" value="TTR"> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
55 <option value="TTR">TTR</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
56 <option value="nonorm">No Normalization</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
57 <option value="nzmean">Non-Zero Mean</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
58 <option value="totreads">Total read counts</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
59 <option value="zinfnb">Zero inflated Negative Binomial model</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
60 <option value="quantile">Quantile Normalization</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
61 <option value="betageom">Beta-Geometric Correction</option> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
62 </param> |
|
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
63 </xml> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
64 <xml name="standard_inputs"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
65 <expand macro="inputs" /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
66 <yield /> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
67 <expand macro="ignore_tas" /> |
|
7
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
68 <expand macro="normal" /> |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
69 </xml> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
70 <token name="@LINK_INPUTS@"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
71 <![CDATA[ |
|
4
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
72 #if str($mode.replicates) == 'Batch': |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
73 #set $input_files = $mode.inputs |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
74 #else: |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
75 #set $input_files = ','.join(['input_file_%d.wig' % idx for idx, _ in enumerate(str($mode.inputs).split(','))]) |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
76 #for idx, filename in enumerate(str($mode.inputs).split(',')): |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
77 ln -s '$filename' input_file_${idx}.wig && |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
78 #end for |
|
7288ac4e8583
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit b8111d3ebede6ee71b18fbbabc708cdeab340912-dirty
dave
parents:
2
diff
changeset
|
79 #end if |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
80 ln -s '$annotation' annotation.dat && |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
81 ]]> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
82 </token> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
83 <token name="@STANDARD_OPTIONS@"> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
84 -iN $nterm |
|
11
daf2c40fc3f6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
iuc
parents:
10
diff
changeset
|
85 -iC $cterm |
|
7
8ab1c8c909a7
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit f63413d629e4de3c69984b3a96ad8ccfe0d47ada"
iuc
parents:
6
diff
changeset
|
86 -n $normalization |
|
0
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
87 </token> |
|
8ccb1b841efb
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 9ffba16c072c7dafe4ef0b70cd2ef166fbe903d0
iuc
parents:
diff
changeset
|
88 </macros> |
